Experiment: m.b. nitrate 400 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_0339 and B158DRAFT_0340 overlap by 41 nucleotides B158DRAFT_0340 and B158DRAFT_0341 are separated by 79 nucleotides B158DRAFT_0341 and B158DRAFT_0342 are separated by 259 nucleotides
B158DRAFT_0339: B158DRAFT_0339 - hypothetical protein, at 340,474 to 341,049
_0339
B158DRAFT_0340: B158DRAFT_0340 - hypothetical protein, at 341,009 to 341,374
_0340
B158DRAFT_0341: B158DRAFT_0341 - hypothetical protein, at 341,454 to 342,233
_0341
B158DRAFT_0342: B158DRAFT_0342 - integron integrase, at 342,493 to 343,458
_0342
Position (kb) 341
342
343 Strain fitness (log2 ratio) -2
-1
0
1 at 340.538 kb on - strand, within B158DRAFT_0339 at 340.557 kb on - strand, within B158DRAFT_0339 at 340.680 kb on + strand, within B158DRAFT_0339 at 340.709 kb on + strand, within B158DRAFT_0339 at 340.728 kb on + strand, within B158DRAFT_0339 at 340.830 kb on - strand, within B158DRAFT_0339 at 340.830 kb on - strand, within B158DRAFT_0339 at 340.881 kb on + strand, within B158DRAFT_0339 at 341.005 kb on + strand at 341.013 kb on - strand at 341.015 kb on + strand at 341.236 kb on + strand, within B158DRAFT_0340 at 341.251 kb on - strand, within B158DRAFT_0340 at 341.445 kb on + strand at 341.445 kb on + strand at 341.445 kb on + strand at 341.463 kb on - strand at 341.463 kb on - strand at 341.485 kb on + strand at 341.493 kb on - strand at 341.493 kb on - strand at 341.507 kb on + strand at 341.517 kb on + strand at 341.517 kb on + strand at 341.517 kb on + strand at 341.517 kb on + strand at 341.525 kb on - strand at 341.525 kb on - strand at 341.525 kb on - strand at 341.525 kb on - strand at 341.527 kb on + strand at 341.584 kb on - strand, within B158DRAFT_0341 at 341.655 kb on - strand, within B158DRAFT_0341 at 341.673 kb on + strand, within B158DRAFT_0341 at 341.673 kb on + strand, within B158DRAFT_0341 at 341.681 kb on - strand, within B158DRAFT_0341 at 341.728 kb on + strand, within B158DRAFT_0341 at 341.824 kb on - strand, within B158DRAFT_0341 at 341.912 kb on - strand, within B158DRAFT_0341 at 341.918 kb on + strand, within B158DRAFT_0341 at 341.926 kb on - strand, within B158DRAFT_0341 at 341.974 kb on - strand, within B158DRAFT_0341 at 342.199 kb on - strand at 342.417 kb on - strand at 342.575 kb on - strand at 342.729 kb on - strand, within B158DRAFT_0342 at 342.770 kb on + strand, within B158DRAFT_0342 at 342.770 kb on + strand, within B158DRAFT_0342 at 342.770 kb on + strand, within B158DRAFT_0342 at 342.770 kb on + strand, within B158DRAFT_0342 at 342.770 kb on + strand, within B158DRAFT_0342 at 342.770 kb on + strand, within B158DRAFT_0342 at 342.770 kb on + strand, within B158DRAFT_0342 at 342.770 kb on + strand, within B158DRAFT_0342 at 342.770 kb on + strand, within B158DRAFT_0342 at 342.770 kb on + strand, within B158DRAFT_0342 at 342.770 kb on + strand, within B158DRAFT_0342 at 342.778 kb on - strand, within B158DRAFT_0342 at 342.778 kb on - strand, within B158DRAFT_0342 at 342.778 kb on - strand, within B158DRAFT_0342 at 342.778 kb on - strand, within B158DRAFT_0342 at 342.895 kb on - strand, within B158DRAFT_0342 at 342.955 kb on + strand, within B158DRAFT_0342 at 342.961 kb on - strand, within B158DRAFT_0342 at 343.180 kb on - strand, within B158DRAFT_0342
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrate 400 mM remove 340,538 - B158DRAFT_0339 0.11 +0.6 340,557 - B158DRAFT_0339 0.14 -1.5 340,680 + B158DRAFT_0339 0.36 -0.5 340,709 + B158DRAFT_0339 0.41 +0.2 340,728 + B158DRAFT_0339 0.44 -0.4 340,830 - B158DRAFT_0339 0.62 -1.5 340,830 - B158DRAFT_0339 0.62 -0.0 340,881 + B158DRAFT_0339 0.71 -1.3 341,005 + +0.2 341,013 - +0.0 341,015 + -0.0 341,236 + B158DRAFT_0340 0.62 -0.8 341,251 - B158DRAFT_0340 0.66 -0.7 341,445 + -0.7 341,445 + -0.5 341,445 + -0.8 341,463 - -0.5 341,463 - -0.0 341,485 + +1.0 341,493 - +0.0 341,493 - -0.7 341,507 + -0.1 341,517 + -0.3 341,517 + +1.0 341,517 + -0.4 341,517 + +0.4 341,525 - -0.1 341,525 - +0.3 341,525 - -0.5 341,525 - -0.2 341,527 + +0.4 341,584 - B158DRAFT_0341 0.17 -1.3 341,655 - B158DRAFT_0341 0.26 +0.9 341,673 + B158DRAFT_0341 0.28 -1.1 341,673 + B158DRAFT_0341 0.28 +0.2 341,681 - B158DRAFT_0341 0.29 -0.6 341,728 + B158DRAFT_0341 0.35 -0.4 341,824 - B158DRAFT_0341 0.47 +1.0 341,912 - B158DRAFT_0341 0.59 -0.3 341,918 + B158DRAFT_0341 0.59 -2.7 341,926 - B158DRAFT_0341 0.61 -0.2 341,974 - B158DRAFT_0341 0.67 -0.9 342,199 - -0.5 342,417 - -1.0 342,575 - -0.4 342,729 - B158DRAFT_0342 0.24 -0.2 342,770 + B158DRAFT_0342 0.29 -0.2 342,770 + B158DRAFT_0342 0.29 -0.3 342,770 + B158DRAFT_0342 0.29 +0.6 342,770 + B158DRAFT_0342 0.29 -1.5 342,770 + B158DRAFT_0342 0.29 -0.5 342,770 + B158DRAFT_0342 0.29 -0.1 342,770 + B158DRAFT_0342 0.29 -0.3 342,770 + B158DRAFT_0342 0.29 -0.5 342,770 + B158DRAFT_0342 0.29 -0.3 342,770 + B158DRAFT_0342 0.29 -2.1 342,770 + B158DRAFT_0342 0.29 +1.5 342,778 - B158DRAFT_0342 0.30 -0.1 342,778 - B158DRAFT_0342 0.30 -1.1 342,778 - B158DRAFT_0342 0.30 -0.4 342,778 - B158DRAFT_0342 0.30 +0.4 342,895 - B158DRAFT_0342 0.42 -0.2 342,955 + B158DRAFT_0342 0.48 -0.1 342,961 - B158DRAFT_0342 0.48 -0.7 343,180 - B158DRAFT_0342 0.71 -0.0
Or see this region's nucleotide sequence