Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_2455

Experiment: m.b. nitrite 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_2454 and B158DRAFT_2455 are separated by 57 nucleotidesB158DRAFT_2455 and B158DRAFT_2456 are separated by 285 nucleotides B158DRAFT_2454: B158DRAFT_2454 - Predicted methyltransferase, at 629,406 to 630,344 _2454 B158DRAFT_2455: B158DRAFT_2455 - Transcriptional regulator, at 630,402 to 631,406 _2455 B158DRAFT_2456: B158DRAFT_2456 - cysteine synthase A, at 631,692 to 632,639 _2456 Position (kb) 630 631 632Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5 6 7 8at 629.424 kb on + strandat 629.432 kb on - strandat 629.432 kb on - strandat 629.448 kb on + strandat 629.448 kb on + strandat 629.448 kb on + strandat 629.448 kb on + strandat 629.456 kb on - strandat 629.456 kb on - strandat 629.456 kb on - strandat 629.472 kb on - strandat 629.472 kb on - strandat 629.481 kb on - strandat 629.517 kb on + strand, within B158DRAFT_2454at 629.522 kb on + strand, within B158DRAFT_2454at 629.522 kb on + strand, within B158DRAFT_2454at 629.522 kb on + strand, within B158DRAFT_2454at 629.530 kb on - strand, within B158DRAFT_2454at 629.566 kb on - strand, within B158DRAFT_2454at 629.698 kb on + strand, within B158DRAFT_2454at 629.710 kb on - strand, within B158DRAFT_2454at 629.711 kb on - strand, within B158DRAFT_2454at 629.783 kb on + strand, within B158DRAFT_2454at 629.783 kb on + strand, within B158DRAFT_2454at 629.783 kb on + strand, within B158DRAFT_2454at 629.783 kb on + strand, within B158DRAFT_2454at 629.791 kb on - strand, within B158DRAFT_2454at 629.791 kb on - strand, within B158DRAFT_2454at 629.791 kb on - strand, within B158DRAFT_2454at 629.791 kb on - strand, within B158DRAFT_2454at 629.869 kb on + strand, within B158DRAFT_2454at 629.869 kb on + strand, within B158DRAFT_2454at 629.869 kb on + strand, within B158DRAFT_2454at 629.934 kb on + strand, within B158DRAFT_2454at 629.944 kb on + strand, within B158DRAFT_2454at 629.973 kb on + strand, within B158DRAFT_2454at 629.975 kb on + strand, within B158DRAFT_2454at 630.016 kb on + strand, within B158DRAFT_2454at 630.024 kb on - strand, within B158DRAFT_2454at 630.025 kb on - strand, within B158DRAFT_2454at 630.061 kb on + strand, within B158DRAFT_2454at 630.061 kb on + strand, within B158DRAFT_2454at 630.163 kb on + strand, within B158DRAFT_2454at 630.163 kb on + strand, within B158DRAFT_2454at 630.171 kb on - strand, within B158DRAFT_2454at 630.200 kb on + strand, within B158DRAFT_2454at 630.221 kb on + strand, within B158DRAFT_2454at 630.221 kb on + strand, within B158DRAFT_2454at 630.228 kb on + strand, within B158DRAFT_2454at 630.238 kb on - strand, within B158DRAFT_2454at 630.386 kb on - strandat 630.399 kb on + strandat 630.426 kb on + strandat 630.426 kb on - strandat 630.470 kb on - strandat 630.545 kb on - strand, within B158DRAFT_2455at 630.598 kb on + strand, within B158DRAFT_2455at 630.606 kb on - strand, within B158DRAFT_2455at 630.660 kb on + strand, within B158DRAFT_2455at 630.666 kb on + strand, within B158DRAFT_2455at 630.668 kb on - strand, within B158DRAFT_2455at 630.875 kb on + strand, within B158DRAFT_2455at 630.875 kb on + strand, within B158DRAFT_2455at 630.877 kb on + strand, within B158DRAFT_2455at 630.883 kb on - strand, within B158DRAFT_2455at 630.883 kb on - strand, within B158DRAFT_2455at 630.883 kb on - strand, within B158DRAFT_2455at 630.883 kb on - strand, within B158DRAFT_2455at 630.883 kb on - strand, within B158DRAFT_2455at 630.885 kb on - strand, within B158DRAFT_2455at 630.893 kb on + strand, within B158DRAFT_2455at 630.901 kb on + strand, within B158DRAFT_2455at 630.955 kb on - strand, within B158DRAFT_2455at 631.005 kb on + strand, within B158DRAFT_2455at 631.015 kb on + strand, within B158DRAFT_2455at 631.023 kb on - strand, within B158DRAFT_2455at 631.023 kb on - strand, within B158DRAFT_2455at 631.066 kb on + strand, within B158DRAFT_2455at 631.190 kb on - strand, within B158DRAFT_2455at 631.226 kb on + strand, within B158DRAFT_2455at 631.234 kb on - strand, within B158DRAFT_2455at 631.234 kb on - strand, within B158DRAFT_2455at 631.234 kb on - strand, within B158DRAFT_2455at 631.345 kb on - strandat 631.350 kb on - strandat 631.361 kb on - strandat 631.519 kb on + strandat 631.580 kb on - strandat 631.821 kb on + strand, within B158DRAFT_2456at 631.829 kb on - strand, within B158DRAFT_2456at 631.829 kb on - strand, within B158DRAFT_2456at 631.859 kb on - strand, within B158DRAFT_2456at 631.882 kb on + strand, within B158DRAFT_2456at 631.892 kb on + strand, within B158DRAFT_2456at 631.915 kb on - strand, within B158DRAFT_2456at 631.923 kb on + strand, within B158DRAFT_2456at 631.928 kb on + strand, within B158DRAFT_2456at 631.931 kb on - strand, within B158DRAFT_2456at 631.931 kb on - strand, within B158DRAFT_2456at 631.931 kb on - strand, within B158DRAFT_2456at 631.936 kb on - strand, within B158DRAFT_2456at 632.038 kb on - strand, within B158DRAFT_2456at 632.134 kb on - strand, within B158DRAFT_2456at 632.147 kb on + strand, within B158DRAFT_2456at 632.150 kb on + strand, within B158DRAFT_2456at 632.319 kb on + strand, within B158DRAFT_2456at 632.319 kb on + strand, within B158DRAFT_2456at 632.319 kb on + strand, within B158DRAFT_2456

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrite 20 mM
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629,424 + -1.6
629,432 - -0.3
629,432 - -4.2
629,448 + -2.8
629,448 + -0.7
629,448 + -0.9
629,448 + -0.3
629,456 - +1.6
629,456 - +1.5
629,456 - -1.4
629,472 - -0.9
629,472 - -1.3
629,481 - -0.5
629,517 + B158DRAFT_2454 0.12 -1.7
629,522 + B158DRAFT_2454 0.12 -0.1
629,522 + B158DRAFT_2454 0.12 -0.3
629,522 + B158DRAFT_2454 0.12 +0.3
629,530 - B158DRAFT_2454 0.13 -0.9
629,566 - B158DRAFT_2454 0.17 +0.3
629,698 + B158DRAFT_2454 0.31 -2.1
629,710 - B158DRAFT_2454 0.32 -0.5
629,711 - B158DRAFT_2454 0.32 -2.0
629,783 + B158DRAFT_2454 0.40 -0.7
629,783 + B158DRAFT_2454 0.40 -1.1
629,783 + B158DRAFT_2454 0.40 -0.9
629,783 + B158DRAFT_2454 0.40 -1.6
629,791 - B158DRAFT_2454 0.41 -0.4
629,791 - B158DRAFT_2454 0.41 -0.7
629,791 - B158DRAFT_2454 0.41 -1.5
629,791 - B158DRAFT_2454 0.41 -1.5
629,869 + B158DRAFT_2454 0.49 -1.1
629,869 + B158DRAFT_2454 0.49 +0.7
629,869 + B158DRAFT_2454 0.49 +0.8
629,934 + B158DRAFT_2454 0.56 -0.1
629,944 + B158DRAFT_2454 0.57 -1.8
629,973 + B158DRAFT_2454 0.60 -0.8
629,975 + B158DRAFT_2454 0.61 -0.6
630,016 + B158DRAFT_2454 0.65 -0.7
630,024 - B158DRAFT_2454 0.66 -0.6
630,025 - B158DRAFT_2454 0.66 -3.2
630,061 + B158DRAFT_2454 0.70 -1.4
630,061 + B158DRAFT_2454 0.70 +0.4
630,163 + B158DRAFT_2454 0.81 -0.3
630,163 + B158DRAFT_2454 0.81 -0.1
630,171 - B158DRAFT_2454 0.81 -1.7
630,200 + B158DRAFT_2454 0.85 -0.7
630,221 + B158DRAFT_2454 0.87 +1.3
630,221 + B158DRAFT_2454 0.87 -2.9
630,228 + B158DRAFT_2454 0.88 -1.4
630,238 - B158DRAFT_2454 0.89 -2.0
630,386 - +0.6
630,399 + -0.3
630,426 + -1.4
630,426 - +1.6
630,470 - +0.9
630,545 - B158DRAFT_2455 0.14 -1.6
630,598 + B158DRAFT_2455 0.20 -0.6
630,606 - B158DRAFT_2455 0.20 +1.0
630,660 + B158DRAFT_2455 0.26 -0.1
630,666 + B158DRAFT_2455 0.26 +0.3
630,668 - B158DRAFT_2455 0.26 +1.3
630,875 + B158DRAFT_2455 0.47 -0.8
630,875 + B158DRAFT_2455 0.47 +0.7
630,877 + B158DRAFT_2455 0.47 -1.2
630,883 - B158DRAFT_2455 0.48 +0.2
630,883 - B158DRAFT_2455 0.48 +1.3
630,883 - B158DRAFT_2455 0.48 +0.1
630,883 - B158DRAFT_2455 0.48 +8.2
630,883 - B158DRAFT_2455 0.48 -1.8
630,885 - B158DRAFT_2455 0.48 +0.8
630,893 + B158DRAFT_2455 0.49 -0.2
630,901 + B158DRAFT_2455 0.50 -0.0
630,955 - B158DRAFT_2455 0.55 -1.7
631,005 + B158DRAFT_2455 0.60 -0.3
631,015 + B158DRAFT_2455 0.61 +0.1
631,023 - B158DRAFT_2455 0.62 +0.5
631,023 - B158DRAFT_2455 0.62 +0.6
631,066 + B158DRAFT_2455 0.66 -2.4
631,190 - B158DRAFT_2455 0.78 +0.1
631,226 + B158DRAFT_2455 0.82 -0.6
631,234 - B158DRAFT_2455 0.83 +3.5
631,234 - B158DRAFT_2455 0.83 -2.6
631,234 - B158DRAFT_2455 0.83 -0.1
631,345 - -1.1
631,350 - -0.2
631,361 - -1.6
631,519 + +1.4
631,580 - -1.4
631,821 + B158DRAFT_2456 0.14 +1.2
631,829 - B158DRAFT_2456 0.14 +0.1
631,829 - B158DRAFT_2456 0.14 -0.2
631,859 - B158DRAFT_2456 0.18 -0.8
631,882 + B158DRAFT_2456 0.20 -0.2
631,892 + B158DRAFT_2456 0.21 -0.4
631,915 - B158DRAFT_2456 0.24 -0.8
631,923 + B158DRAFT_2456 0.24 +1.8
631,928 + B158DRAFT_2456 0.25 -0.3
631,931 - B158DRAFT_2456 0.25 +0.0
631,931 - B158DRAFT_2456 0.25 -1.5
631,931 - B158DRAFT_2456 0.25 +2.0
631,936 - B158DRAFT_2456 0.26 -1.0
632,038 - B158DRAFT_2456 0.36 -0.7
632,134 - B158DRAFT_2456 0.47 -1.2
632,147 + B158DRAFT_2456 0.48 -0.5
632,150 + B158DRAFT_2456 0.48 -0.2
632,319 + B158DRAFT_2456 0.66 +1.1
632,319 + B158DRAFT_2456 0.66 -1.9
632,319 + B158DRAFT_2456 0.66 -0.8

Or see this region's nucleotide sequence