Experiment: m.b. nitrite 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_2437 and B158DRAFT_2438 overlap by 30 nucleotides B158DRAFT_2438 and B158DRAFT_2439 are separated by 148 nucleotides B158DRAFT_2439 and B158DRAFT_2440 are separated by 23 nucleotides
B158DRAFT_2437: B158DRAFT_2437 - Predicted membrane protein, at 608,686 to 609,885
_2437
B158DRAFT_2438: B158DRAFT_2438 - hypothetical protein, at 609,856 to 611,433
_2438
B158DRAFT_2439: B158DRAFT_2439 - Peroxiredoxin, at 611,582 to 612,043
_2439
B158DRAFT_2440: B158DRAFT_2440 - Putative Zn-dependent protease, contains TPR repeats, at 612,067 to 613,566
_2440
Position (kb) 609
610
611
612 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 608.877 kb on + strand, within B158DRAFT_2437 at 608.885 kb on + strand, within B158DRAFT_2437 at 608.909 kb on - strand, within B158DRAFT_2437 at 608.912 kb on + strand, within B158DRAFT_2437 at 609.056 kb on + strand, within B158DRAFT_2437 at 609.056 kb on + strand, within B158DRAFT_2437 at 609.056 kb on + strand, within B158DRAFT_2437 at 609.056 kb on + strand, within B158DRAFT_2437 at 609.056 kb on + strand, within B158DRAFT_2437 at 609.056 kb on + strand, within B158DRAFT_2437 at 609.056 kb on + strand, within B158DRAFT_2437 at 609.056 kb on + strand, within B158DRAFT_2437 at 609.064 kb on - strand, within B158DRAFT_2437 at 609.064 kb on - strand, within B158DRAFT_2437 at 609.064 kb on - strand, within B158DRAFT_2437 at 609.066 kb on + strand, within B158DRAFT_2437 at 609.163 kb on + strand, within B158DRAFT_2437 at 609.163 kb on + strand, within B158DRAFT_2437 at 609.171 kb on - strand, within B158DRAFT_2437 at 609.171 kb on - strand, within B158DRAFT_2437 at 609.171 kb on - strand, within B158DRAFT_2437 at 609.171 kb on - strand, within B158DRAFT_2437 at 609.187 kb on + strand, within B158DRAFT_2437 at 609.249 kb on - strand, within B158DRAFT_2437 at 609.268 kb on - strand, within B158DRAFT_2437 at 609.428 kb on - strand, within B158DRAFT_2437 at 609.434 kb on + strand, within B158DRAFT_2437 at 609.439 kb on + strand, within B158DRAFT_2437 at 609.472 kb on - strand, within B158DRAFT_2437 at 609.472 kb on - strand, within B158DRAFT_2437 at 609.521 kb on - strand, within B158DRAFT_2437 at 609.542 kb on + strand, within B158DRAFT_2437 at 609.542 kb on + strand, within B158DRAFT_2437 at 609.625 kb on + strand, within B158DRAFT_2437 at 609.635 kb on + strand, within B158DRAFT_2437 at 609.643 kb on - strand, within B158DRAFT_2437 at 609.729 kb on + strand, within B158DRAFT_2437 at 609.896 kb on + strand at 609.917 kb on - strand at 609.931 kb on - strand at 610.017 kb on + strand, within B158DRAFT_2438 at 610.017 kb on + strand, within B158DRAFT_2438 at 610.025 kb on - strand, within B158DRAFT_2438 at 610.055 kb on + strand, within B158DRAFT_2438 at 610.055 kb on + strand, within B158DRAFT_2438 at 610.063 kb on - strand, within B158DRAFT_2438 at 610.063 kb on - strand, within B158DRAFT_2438 at 610.096 kb on - strand, within B158DRAFT_2438 at 610.096 kb on - strand, within B158DRAFT_2438 at 610.124 kb on + strand, within B158DRAFT_2438 at 610.209 kb on + strand, within B158DRAFT_2438 at 610.281 kb on + strand, within B158DRAFT_2438 at 610.372 kb on + strand, within B158DRAFT_2438 at 610.417 kb on - strand, within B158DRAFT_2438 at 610.457 kb on + strand, within B158DRAFT_2438 at 610.457 kb on + strand, within B158DRAFT_2438 at 610.541 kb on + strand, within B158DRAFT_2438 at 610.592 kb on + strand, within B158DRAFT_2438 at 610.600 kb on - strand, within B158DRAFT_2438 at 610.610 kb on - strand, within B158DRAFT_2438 at 610.791 kb on + strand, within B158DRAFT_2438 at 610.799 kb on - strand, within B158DRAFT_2438 at 610.963 kb on + strand, within B158DRAFT_2438 at 610.963 kb on + strand, within B158DRAFT_2438 at 611.113 kb on + strand, within B158DRAFT_2438 at 611.125 kb on + strand, within B158DRAFT_2438 at 611.141 kb on + strand, within B158DRAFT_2438 at 611.163 kb on + strand, within B158DRAFT_2438 at 611.189 kb on + strand, within B158DRAFT_2438 at 611.274 kb on + strand, within B158DRAFT_2438 at 611.293 kb on + strand at 611.299 kb on - strand at 611.299 kb on - strand at 611.299 kb on - strand at 611.301 kb on - strand at 611.301 kb on - strand at 611.340 kb on + strand at 611.377 kb on - strand at 611.386 kb on + strand at 611.386 kb on + strand at 611.386 kb on + strand at 611.394 kb on - strand at 611.394 kb on - strand at 611.394 kb on - strand at 611.394 kb on - strand at 611.394 kb on - strand at 611.394 kb on - strand at 611.404 kb on - strand at 611.416 kb on - strand at 611.419 kb on - strand at 611.419 kb on - strand at 611.429 kb on + strand at 611.437 kb on - strand at 611.476 kb on - strand at 611.482 kb on + strand at 611.482 kb on + strand at 611.482 kb on + strand at 611.482 kb on + strand at 611.490 kb on - strand at 611.645 kb on - strand, within B158DRAFT_2439 at 611.725 kb on - strand, within B158DRAFT_2439 at 611.728 kb on - strand, within B158DRAFT_2439 at 611.784 kb on + strand, within B158DRAFT_2439 at 611.792 kb on - strand, within B158DRAFT_2439 at 611.833 kb on - strand, within B158DRAFT_2439 at 612.050 kb on - strand at 612.064 kb on + strand at 612.064 kb on + strand at 612.072 kb on - strand at 612.072 kb on - strand at 612.072 kb on - strand at 612.072 kb on - strand at 612.133 kb on + strand at 612.133 kb on + strand at 612.133 kb on + strand at 612.141 kb on - strand at 612.161 kb on + strand at 612.161 kb on + strand at 612.161 kb on + strand at 612.179 kb on - strand at 612.223 kb on - strand, within B158DRAFT_2440 at 612.223 kb on - strand, within B158DRAFT_2440 at 612.235 kb on + strand, within B158DRAFT_2440 at 612.241 kb on + strand, within B158DRAFT_2440 at 612.241 kb on + strand, within B158DRAFT_2440 at 612.241 kb on + strand, within B158DRAFT_2440 at 612.241 kb on + strand, within B158DRAFT_2440 at 612.241 kb on + strand, within B158DRAFT_2440 at 612.248 kb on - strand, within B158DRAFT_2440 at 612.249 kb on - strand, within B158DRAFT_2440 at 612.249 kb on - strand, within B158DRAFT_2440 at 612.249 kb on - strand, within B158DRAFT_2440 at 612.249 kb on - strand, within B158DRAFT_2440 at 612.249 kb on - strand, within B158DRAFT_2440 at 612.270 kb on - strand, within B158DRAFT_2440 at 612.270 kb on - strand, within B158DRAFT_2440 at 612.270 kb on - strand, within B158DRAFT_2440 at 612.270 kb on - strand, within B158DRAFT_2440 at 612.281 kb on + strand, within B158DRAFT_2440 at 612.281 kb on + strand, within B158DRAFT_2440 at 612.281 kb on + strand, within B158DRAFT_2440 at 612.281 kb on + strand, within B158DRAFT_2440 at 612.289 kb on - strand, within B158DRAFT_2440 at 612.289 kb on - strand, within B158DRAFT_2440 at 612.289 kb on - strand, within B158DRAFT_2440 at 612.289 kb on - strand, within B158DRAFT_2440 at 612.289 kb on - strand, within B158DRAFT_2440 at 612.289 kb on - strand, within B158DRAFT_2440 at 612.289 kb on - strand, within B158DRAFT_2440 at 612.289 kb on - strand, within B158DRAFT_2440 at 612.294 kb on - strand, within B158DRAFT_2440 at 612.368 kb on + strand, within B158DRAFT_2440 at 612.368 kb on + strand, within B158DRAFT_2440 at 612.376 kb on - strand, within B158DRAFT_2440 at 612.402 kb on - strand, within B158DRAFT_2440
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 20 mM remove 608,877 + B158DRAFT_2437 0.16 -0.6 608,885 + B158DRAFT_2437 0.17 -1.4 608,909 - B158DRAFT_2437 0.19 +0.3 608,912 + B158DRAFT_2437 0.19 -3.2 609,056 + B158DRAFT_2437 0.31 +0.1 609,056 + B158DRAFT_2437 0.31 -0.9 609,056 + B158DRAFT_2437 0.31 -0.4 609,056 + B158DRAFT_2437 0.31 -1.3 609,056 + B158DRAFT_2437 0.31 -0.6 609,056 + B158DRAFT_2437 0.31 +0.4 609,056 + B158DRAFT_2437 0.31 +0.4 609,056 + B158DRAFT_2437 0.31 +1.5 609,064 - B158DRAFT_2437 0.32 -2.1 609,064 - B158DRAFT_2437 0.32 -1.3 609,064 - B158DRAFT_2437 0.32 +0.1 609,066 + B158DRAFT_2437 0.32 -0.2 609,163 + B158DRAFT_2437 0.40 -0.9 609,163 + B158DRAFT_2437 0.40 +0.1 609,171 - B158DRAFT_2437 0.40 -0.9 609,171 - B158DRAFT_2437 0.40 -1.0 609,171 - B158DRAFT_2437 0.40 -0.4 609,171 - B158DRAFT_2437 0.40 -2.5 609,187 + B158DRAFT_2437 0.42 +0.2 609,249 - B158DRAFT_2437 0.47 -1.9 609,268 - B158DRAFT_2437 0.48 +0.8 609,428 - B158DRAFT_2437 0.62 -1.3 609,434 + B158DRAFT_2437 0.62 -0.1 609,439 + B158DRAFT_2437 0.63 -1.2 609,472 - B158DRAFT_2437 0.66 -0.2 609,472 - B158DRAFT_2437 0.66 -2.2 609,521 - B158DRAFT_2437 0.70 +1.1 609,542 + B158DRAFT_2437 0.71 +0.3 609,542 + B158DRAFT_2437 0.71 -0.1 609,625 + B158DRAFT_2437 0.78 +0.2 609,635 + B158DRAFT_2437 0.79 -0.1 609,643 - B158DRAFT_2437 0.80 -1.9 609,729 + B158DRAFT_2437 0.87 -0.6 609,896 + +0.2 609,917 - -0.5 609,931 - -0.4 610,017 + B158DRAFT_2438 0.10 +0.4 610,017 + B158DRAFT_2438 0.10 -1.1 610,025 - B158DRAFT_2438 0.11 +0.2 610,055 + B158DRAFT_2438 0.13 -1.8 610,055 + B158DRAFT_2438 0.13 -1.3 610,063 - B158DRAFT_2438 0.13 -2.8 610,063 - B158DRAFT_2438 0.13 -1.0 610,096 - B158DRAFT_2438 0.15 -0.6 610,096 - B158DRAFT_2438 0.15 -1.7 610,124 + B158DRAFT_2438 0.17 -1.1 610,209 + B158DRAFT_2438 0.22 -1.2 610,281 + B158DRAFT_2438 0.27 +0.8 610,372 + B158DRAFT_2438 0.33 -0.9 610,417 - B158DRAFT_2438 0.36 -0.9 610,457 + B158DRAFT_2438 0.38 -0.4 610,457 + B158DRAFT_2438 0.38 -1.2 610,541 + B158DRAFT_2438 0.43 +2.0 610,592 + B158DRAFT_2438 0.47 +0.2 610,600 - B158DRAFT_2438 0.47 +0.6 610,610 - B158DRAFT_2438 0.48 -0.6 610,791 + B158DRAFT_2438 0.59 +0.4 610,799 - B158DRAFT_2438 0.60 -1.4 610,963 + B158DRAFT_2438 0.70 -0.8 610,963 + B158DRAFT_2438 0.70 -0.9 611,113 + B158DRAFT_2438 0.80 +1.0 611,125 + B158DRAFT_2438 0.80 -0.5 611,141 + B158DRAFT_2438 0.81 -1.1 611,163 + B158DRAFT_2438 0.83 -0.1 611,189 + B158DRAFT_2438 0.84 +0.6 611,274 + B158DRAFT_2438 0.90 +2.0 611,293 + -1.5 611,299 - -1.3 611,299 - +0.1 611,299 - -0.6 611,301 - +0.2 611,301 - -0.9 611,340 + +1.8 611,377 - -1.5 611,386 + -0.4 611,386 + +0.3 611,386 + -0.3 611,394 - -0.5 611,394 - -1.4 611,394 - +0.1 611,394 - -1.7 611,394 - -1.3 611,394 - +0.0 611,404 - -1.5 611,416 - -2.0 611,419 - -1.3 611,419 - -1.4 611,429 + -0.9 611,437 - +1.0 611,476 - -0.7 611,482 + +0.2 611,482 + +1.1 611,482 + -2.1 611,482 + -3.3 611,490 - -0.5 611,645 - B158DRAFT_2439 0.14 -1.4 611,725 - B158DRAFT_2439 0.31 +1.4 611,728 - B158DRAFT_2439 0.32 +0.1 611,784 + B158DRAFT_2439 0.44 -1.2 611,792 - B158DRAFT_2439 0.45 +1.6 611,833 - B158DRAFT_2439 0.54 +0.4 612,050 - +0.5 612,064 + -1.1 612,064 + -0.4 612,072 - -0.5 612,072 - -0.8 612,072 - -1.2 612,072 - +0.3 612,133 + +2.3 612,133 + +1.6 612,133 + +2.8 612,141 - +2.3 612,161 + +5.1 612,161 + +5.2 612,161 + +5.5 612,179 - +4.8 612,223 - B158DRAFT_2440 0.10 +4.9 612,223 - B158DRAFT_2440 0.10 +5.0 612,235 + B158DRAFT_2440 0.11 +5.5 612,241 + B158DRAFT_2440 0.12 +4.8 612,241 + B158DRAFT_2440 0.12 +5.2 612,241 + B158DRAFT_2440 0.12 +5.6 612,241 + B158DRAFT_2440 0.12 +5.1 612,241 + B158DRAFT_2440 0.12 +5.1 612,248 - B158DRAFT_2440 0.12 +5.7 612,249 - B158DRAFT_2440 0.12 +4.7 612,249 - B158DRAFT_2440 0.12 +4.6 612,249 - B158DRAFT_2440 0.12 +5.0 612,249 - B158DRAFT_2440 0.12 +4.0 612,249 - B158DRAFT_2440 0.12 +4.7 612,270 - B158DRAFT_2440 0.14 +5.4 612,270 - B158DRAFT_2440 0.14 +4.8 612,270 - B158DRAFT_2440 0.14 +5.2 612,270 - B158DRAFT_2440 0.14 +4.9 612,281 + B158DRAFT_2440 0.14 +5.7 612,281 + B158DRAFT_2440 0.14 +5.3 612,281 + B158DRAFT_2440 0.14 +5.3 612,281 + B158DRAFT_2440 0.14 +4.9 612,289 - B158DRAFT_2440 0.15 +4.8 612,289 - B158DRAFT_2440 0.15 +6.3 612,289 - B158DRAFT_2440 0.15 +4.4 612,289 - B158DRAFT_2440 0.15 +4.9 612,289 - B158DRAFT_2440 0.15 +5.2 612,289 - B158DRAFT_2440 0.15 +4.6 612,289 - B158DRAFT_2440 0.15 +5.8 612,289 - B158DRAFT_2440 0.15 +5.1 612,294 - B158DRAFT_2440 0.15 +6.6 612,368 + B158DRAFT_2440 0.20 +5.5 612,368 + B158DRAFT_2440 0.20 +5.0 612,376 - B158DRAFT_2440 0.21 +5.1 612,402 - B158DRAFT_2440 0.22 +5.0
Or see this region's nucleotide sequence