Experiment: m.b. nitrite 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_2417 and B158DRAFT_2418 are separated by 171 nucleotides B158DRAFT_2418 and B158DRAFT_2419 overlap by 4 nucleotides B158DRAFT_2419 and B158DRAFT_2420 overlap by 4 nucleotides B158DRAFT_2420 and B158DRAFT_2421 are separated by 4 nucleotides
B158DRAFT_2417: B158DRAFT_2417 - prepilin-type N-terminal cleavage/methylation domain, at 589,420 to 589,827
_2417
B158DRAFT_2418: B158DRAFT_2418 - Tfp pilus assembly protein FimT, at 589,999 to 590,562
_2418
B158DRAFT_2419: B158DRAFT_2419 - type IV pilus modification protein PilV, at 590,559 to 591,152
_2419
B158DRAFT_2420: B158DRAFT_2420 - prepilin-type N-terminal cleavage/methylation domain, at 591,149 to 591,949
_2420
B158DRAFT_2421: B158DRAFT_2421 - hypothetical protein, at 591,954 to 592,511
_2421
Position (kb) 590
591
592 Strain fitness (log2 ratio) -2
-1
0
1
2 at 589.596 kb on + strand, within B158DRAFT_2417 at 589.596 kb on + strand, within B158DRAFT_2417 at 589.596 kb on + strand, within B158DRAFT_2417 at 589.596 kb on - strand, within B158DRAFT_2417 at 589.604 kb on - strand, within B158DRAFT_2417 at 589.688 kb on - strand, within B158DRAFT_2417 at 589.688 kb on - strand, within B158DRAFT_2417 at 589.805 kb on - strand at 589.850 kb on + strand at 589.960 kb on - strand at 589.996 kb on + strand at 590.175 kb on + strand, within B158DRAFT_2418 at 590.185 kb on + strand, within B158DRAFT_2418 at 590.193 kb on - strand, within B158DRAFT_2418 at 590.193 kb on - strand, within B158DRAFT_2418 at 590.246 kb on + strand, within B158DRAFT_2418 at 590.271 kb on + strand, within B158DRAFT_2418 at 590.271 kb on + strand, within B158DRAFT_2418 at 590.326 kb on - strand, within B158DRAFT_2418 at 590.441 kb on + strand, within B158DRAFT_2418 at 590.441 kb on + strand, within B158DRAFT_2418 at 590.441 kb on + strand, within B158DRAFT_2418 at 590.441 kb on + strand, within B158DRAFT_2418 at 590.449 kb on - strand, within B158DRAFT_2418 at 590.543 kb on + strand at 590.574 kb on + strand at 590.582 kb on - strand at 590.582 kb on - strand at 590.633 kb on + strand, within B158DRAFT_2419 at 590.704 kb on + strand, within B158DRAFT_2419 at 590.744 kb on + strand, within B158DRAFT_2419 at 590.872 kb on + strand, within B158DRAFT_2419 at 591.006 kb on - strand, within B158DRAFT_2419 at 591.246 kb on - strand, within B158DRAFT_2420 at 591.359 kb on + strand, within B158DRAFT_2420 at 591.367 kb on - strand, within B158DRAFT_2420 at 591.380 kb on + strand, within B158DRAFT_2420 at 591.421 kb on + strand, within B158DRAFT_2420 at 591.520 kb on + strand, within B158DRAFT_2420 at 591.522 kb on + strand, within B158DRAFT_2420 at 591.522 kb on + strand, within B158DRAFT_2420 at 591.522 kb on + strand, within B158DRAFT_2420 at 591.530 kb on - strand, within B158DRAFT_2420 at 591.530 kb on - strand, within B158DRAFT_2420 at 591.543 kb on - strand, within B158DRAFT_2420 at 591.612 kb on - strand, within B158DRAFT_2420 at 591.842 kb on + strand, within B158DRAFT_2420 at 591.842 kb on + strand, within B158DRAFT_2420 at 591.842 kb on + strand, within B158DRAFT_2420 at 591.850 kb on - strand, within B158DRAFT_2420 at 591.851 kb on - strand, within B158DRAFT_2420 at 592.084 kb on + strand, within B158DRAFT_2421
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 20 mM remove 589,596 + B158DRAFT_2417 0.43 -0.8 589,596 + B158DRAFT_2417 0.43 -0.0 589,596 + B158DRAFT_2417 0.43 +0.5 589,596 - B158DRAFT_2417 0.43 +0.2 589,604 - B158DRAFT_2417 0.45 +1.1 589,688 - B158DRAFT_2417 0.66 +2.3 589,688 - B158DRAFT_2417 0.66 +1.5 589,805 - +0.1 589,850 + -1.3 589,960 - -0.0 589,996 + -1.4 590,175 + B158DRAFT_2418 0.31 +0.1 590,185 + B158DRAFT_2418 0.33 -0.3 590,193 - B158DRAFT_2418 0.34 +0.6 590,193 - B158DRAFT_2418 0.34 +1.0 590,246 + B158DRAFT_2418 0.44 +1.6 590,271 + B158DRAFT_2418 0.48 -0.3 590,271 + B158DRAFT_2418 0.48 -0.0 590,326 - B158DRAFT_2418 0.58 +0.1 590,441 + B158DRAFT_2418 0.78 -0.1 590,441 + B158DRAFT_2418 0.78 -2.3 590,441 + B158DRAFT_2418 0.78 -1.3 590,441 + B158DRAFT_2418 0.78 -1.3 590,449 - B158DRAFT_2418 0.80 -0.1 590,543 + +0.2 590,574 + -1.3 590,582 - -0.8 590,582 - +0.9 590,633 + B158DRAFT_2419 0.12 -0.3 590,704 + B158DRAFT_2419 0.24 +0.5 590,744 + B158DRAFT_2419 0.31 +0.6 590,872 + B158DRAFT_2419 0.53 +2.7 591,006 - B158DRAFT_2419 0.75 +0.3 591,246 - B158DRAFT_2420 0.12 +1.3 591,359 + B158DRAFT_2420 0.26 -0.8 591,367 - B158DRAFT_2420 0.27 -0.4 591,380 + B158DRAFT_2420 0.29 -0.7 591,421 + B158DRAFT_2420 0.34 -0.2 591,520 + B158DRAFT_2420 0.46 -2.0 591,522 + B158DRAFT_2420 0.47 -0.8 591,522 + B158DRAFT_2420 0.47 +1.7 591,522 + B158DRAFT_2420 0.47 -0.6 591,530 - B158DRAFT_2420 0.48 -0.4 591,530 - B158DRAFT_2420 0.48 +0.1 591,543 - B158DRAFT_2420 0.49 -1.7 591,612 - B158DRAFT_2420 0.58 +1.2 591,842 + B158DRAFT_2420 0.87 +0.7 591,842 + B158DRAFT_2420 0.87 -0.5 591,842 + B158DRAFT_2420 0.87 +0.5 591,850 - B158DRAFT_2420 0.88 +0.2 591,851 - B158DRAFT_2420 0.88 +0.4 592,084 + B158DRAFT_2421 0.23 +1.4
Or see this region's nucleotide sequence