Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_2385

Experiment: m.b. nitrite 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_2383 and B158DRAFT_2384 overlap by 41 nucleotidesB158DRAFT_2384 and B158DRAFT_2385 are separated by 14 nucleotidesB158DRAFT_2385 and B158DRAFT_2386 are separated by 170 nucleotidesB158DRAFT_2386 and B158DRAFT_2387 are separated by 119 nucleotides B158DRAFT_2383: B158DRAFT_2383 - Protein of unknown function (DUF3108)., at 553,870 to 554,664 _2383 B158DRAFT_2384: B158DRAFT_2384 - phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent, at 554,624 to 555,244 _2384 B158DRAFT_2385: B158DRAFT_2385 - phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1), at 555,259 to 556,296 _2385 B158DRAFT_2386: B158DRAFT_2386 - Outer membrane protein and related peptidoglycan-associated (lipo)proteins, at 556,467 to 557,171 _2386 B158DRAFT_2387: B158DRAFT_2387 - Hypoxanthine-guanine phosphoribosyltransferase, at 557,291 to 557,893 _2387 Position (kb) 555 556 557Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 554.316 kb on + strand, within B158DRAFT_2383at 554.316 kb on + strand, within B158DRAFT_2383at 554.316 kb on + strand, within B158DRAFT_2383at 554.316 kb on + strand, within B158DRAFT_2383at 554.316 kb on + strand, within B158DRAFT_2383at 554.359 kb on - strand, within B158DRAFT_2383at 554.417 kb on + strand, within B158DRAFT_2383at 554.427 kb on + strand, within B158DRAFT_2383at 554.427 kb on + strand, within B158DRAFT_2383at 554.427 kb on + strand, within B158DRAFT_2383at 554.432 kb on + strand, within B158DRAFT_2383at 554.432 kb on + strand, within B158DRAFT_2383at 554.435 kb on - strand, within B158DRAFT_2383at 554.435 kb on - strand, within B158DRAFT_2383at 554.440 kb on - strand, within B158DRAFT_2383at 554.440 kb on - strand, within B158DRAFT_2383at 554.489 kb on + strand, within B158DRAFT_2383at 554.489 kb on + strand, within B158DRAFT_2383at 554.497 kb on - strand, within B158DRAFT_2383at 554.539 kb on - strand, within B158DRAFT_2383at 554.635 kb on + strandat 556.383 kb on + strandat 556.415 kb on + strandat 556.496 kb on + strandat 556.496 kb on + strandat 556.499 kb on - strandat 556.499 kb on - strandat 556.533 kb on - strandat 556.549 kb on + strand, within B158DRAFT_2386at 556.561 kb on + strand, within B158DRAFT_2386at 556.562 kb on - strand, within B158DRAFT_2386at 556.618 kb on + strand, within B158DRAFT_2386at 556.624 kb on - strand, within B158DRAFT_2386at 556.740 kb on + strand, within B158DRAFT_2386at 556.740 kb on + strand, within B158DRAFT_2386at 556.740 kb on + strand, within B158DRAFT_2386at 556.740 kb on + strand, within B158DRAFT_2386at 556.740 kb on + strand, within B158DRAFT_2386at 556.740 kb on + strand, within B158DRAFT_2386at 556.740 kb on + strand, within B158DRAFT_2386at 556.740 kb on + strand, within B158DRAFT_2386at 556.748 kb on - strand, within B158DRAFT_2386at 556.748 kb on - strand, within B158DRAFT_2386at 556.748 kb on - strand, within B158DRAFT_2386at 556.748 kb on - strand, within B158DRAFT_2386at 556.748 kb on - strand, within B158DRAFT_2386at 556.748 kb on - strand, within B158DRAFT_2386at 556.748 kb on - strand, within B158DRAFT_2386at 556.748 kb on - strand, within B158DRAFT_2386at 556.748 kb on - strand, within B158DRAFT_2386at 556.828 kb on + strand, within B158DRAFT_2386at 556.828 kb on + strand, within B158DRAFT_2386at 556.828 kb on + strand, within B158DRAFT_2386at 556.836 kb on - strand, within B158DRAFT_2386at 556.841 kb on + strand, within B158DRAFT_2386at 556.842 kb on + strand, within B158DRAFT_2386at 556.847 kb on + strand, within B158DRAFT_2386at 556.847 kb on + strand, within B158DRAFT_2386at 556.849 kb on - strand, within B158DRAFT_2386at 556.874 kb on + strand, within B158DRAFT_2386at 556.874 kb on + strand, within B158DRAFT_2386at 556.910 kb on - strand, within B158DRAFT_2386at 556.929 kb on + strand, within B158DRAFT_2386at 556.929 kb on + strand, within B158DRAFT_2386at 556.929 kb on + strand, within B158DRAFT_2386at 556.929 kb on + strand, within B158DRAFT_2386at 556.929 kb on + strand, within B158DRAFT_2386at 556.929 kb on + strand, within B158DRAFT_2386at 556.937 kb on - strand, within B158DRAFT_2386at 556.937 kb on - strand, within B158DRAFT_2386at 556.937 kb on - strand, within B158DRAFT_2386at 556.937 kb on - strand, within B158DRAFT_2386at 556.937 kb on - strand, within B158DRAFT_2386at 556.937 kb on - strand, within B158DRAFT_2386at 556.937 kb on - strand, within B158DRAFT_2386at 556.937 kb on - strand, within B158DRAFT_2386at 556.937 kb on - strand, within B158DRAFT_2386at 556.987 kb on - strand, within B158DRAFT_2386at 556.987 kb on - strand, within B158DRAFT_2386at 557.007 kb on + strand, within B158DRAFT_2386at 557.033 kb on - strand, within B158DRAFT_2386at 557.149 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrite 20 mM
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554,316 + B158DRAFT_2383 0.56 -1.7
554,316 + B158DRAFT_2383 0.56 -0.4
554,316 + B158DRAFT_2383 0.56 -1.0
554,316 + B158DRAFT_2383 0.56 -1.8
554,316 + B158DRAFT_2383 0.56 +0.3
554,359 - B158DRAFT_2383 0.62 -1.3
554,417 + B158DRAFT_2383 0.69 -1.2
554,427 + B158DRAFT_2383 0.70 -0.2
554,427 + B158DRAFT_2383 0.70 +0.1
554,427 + B158DRAFT_2383 0.70 -1.8
554,432 + B158DRAFT_2383 0.71 -1.6
554,432 + B158DRAFT_2383 0.71 -0.8
554,435 - B158DRAFT_2383 0.71 -1.2
554,435 - B158DRAFT_2383 0.71 -2.6
554,440 - B158DRAFT_2383 0.72 -2.8
554,440 - B158DRAFT_2383 0.72 +1.6
554,489 + B158DRAFT_2383 0.78 +0.2
554,489 + B158DRAFT_2383 0.78 +1.0
554,497 - B158DRAFT_2383 0.79 -1.9
554,539 - B158DRAFT_2383 0.84 -0.0
554,635 + -1.5
556,383 + +1.8
556,415 + -1.1
556,496 + +1.4
556,496 + -0.7
556,499 - +0.4
556,499 - -2.8
556,533 - -1.6
556,549 + B158DRAFT_2386 0.12 -0.0
556,561 + B158DRAFT_2386 0.13 -0.9
556,562 - B158DRAFT_2386 0.13 -1.7
556,618 + B158DRAFT_2386 0.21 -2.6
556,624 - B158DRAFT_2386 0.22 -0.1
556,740 + B158DRAFT_2386 0.39 -1.7
556,740 + B158DRAFT_2386 0.39 -1.4
556,740 + B158DRAFT_2386 0.39 +0.9
556,740 + B158DRAFT_2386 0.39 +0.8
556,740 + B158DRAFT_2386 0.39 -2.3
556,740 + B158DRAFT_2386 0.39 -1.2
556,740 + B158DRAFT_2386 0.39 -0.9
556,740 + B158DRAFT_2386 0.39 -0.2
556,748 - B158DRAFT_2386 0.40 +0.8
556,748 - B158DRAFT_2386 0.40 -1.1
556,748 - B158DRAFT_2386 0.40 -1.2
556,748 - B158DRAFT_2386 0.40 -2.4
556,748 - B158DRAFT_2386 0.40 -0.8
556,748 - B158DRAFT_2386 0.40 -0.7
556,748 - B158DRAFT_2386 0.40 +1.3
556,748 - B158DRAFT_2386 0.40 -1.9
556,748 - B158DRAFT_2386 0.40 -1.2
556,828 + B158DRAFT_2386 0.51 +0.2
556,828 + B158DRAFT_2386 0.51 -2.1
556,828 + B158DRAFT_2386 0.51 -1.2
556,836 - B158DRAFT_2386 0.52 -1.5
556,841 + B158DRAFT_2386 0.53 -1.8
556,842 + B158DRAFT_2386 0.53 -1.4
556,847 + B158DRAFT_2386 0.54 -2.0
556,847 + B158DRAFT_2386 0.54 -2.6
556,849 - B158DRAFT_2386 0.54 +0.3
556,874 + B158DRAFT_2386 0.58 -1.2
556,874 + B158DRAFT_2386 0.58 -1.7
556,910 - B158DRAFT_2386 0.63 -2.4
556,929 + B158DRAFT_2386 0.66 +0.7
556,929 + B158DRAFT_2386 0.66 -1.6
556,929 + B158DRAFT_2386 0.66 -0.4
556,929 + B158DRAFT_2386 0.66 -0.5
556,929 + B158DRAFT_2386 0.66 -0.5
556,929 + B158DRAFT_2386 0.66 -0.8
556,937 - B158DRAFT_2386 0.67 -0.5
556,937 - B158DRAFT_2386 0.67 -1.8
556,937 - B158DRAFT_2386 0.67 +1.1
556,937 - B158DRAFT_2386 0.67 -2.3
556,937 - B158DRAFT_2386 0.67 +1.6
556,937 - B158DRAFT_2386 0.67 -2.3
556,937 - B158DRAFT_2386 0.67 +0.4
556,937 - B158DRAFT_2386 0.67 -1.6
556,937 - B158DRAFT_2386 0.67 -1.6
556,987 - B158DRAFT_2386 0.74 +0.9
556,987 - B158DRAFT_2386 0.74 -2.3
557,007 + B158DRAFT_2386 0.77 -2.2
557,033 - B158DRAFT_2386 0.80 -1.0
557,149 - -0.4

Or see this region's nucleotide sequence