Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_2383

Experiment: m.b. nitrite 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_2381 and B158DRAFT_2382 are separated by 69 nucleotidesB158DRAFT_2382 and B158DRAFT_2383 are separated by 22 nucleotidesB158DRAFT_2383 and B158DRAFT_2384 overlap by 41 nucleotidesB158DRAFT_2384 and B158DRAFT_2385 are separated by 14 nucleotides B158DRAFT_2381: B158DRAFT_2381 - dCTP deaminase (EC 3.5.4.13), at 552,795 to 553,361 _2381 B158DRAFT_2382: B158DRAFT_2382 - hypothetical protein, at 553,431 to 553,847 _2382 B158DRAFT_2383: B158DRAFT_2383 - Protein of unknown function (DUF3108)., at 553,870 to 554,664 _2383 B158DRAFT_2384: B158DRAFT_2384 - phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent, at 554,624 to 555,244 _2384 B158DRAFT_2385: B158DRAFT_2385 - phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1), at 555,259 to 556,296 _2385 Position (kb) 553 554 555Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 552.912 kb on + strand, within B158DRAFT_2381at 552.920 kb on - strand, within B158DRAFT_2381at 552.925 kb on + strand, within B158DRAFT_2381at 552.933 kb on - strand, within B158DRAFT_2381at 552.933 kb on - strand, within B158DRAFT_2381at 552.933 kb on - strand, within B158DRAFT_2381at 552.940 kb on + strand, within B158DRAFT_2381at 552.940 kb on + strand, within B158DRAFT_2381at 552.940 kb on + strand, within B158DRAFT_2381at 552.940 kb on + strand, within B158DRAFT_2381at 552.940 kb on + strand, within B158DRAFT_2381at 552.940 kb on + strand, within B158DRAFT_2381at 552.940 kb on + strand, within B158DRAFT_2381at 552.940 kb on + strand, within B158DRAFT_2381at 552.940 kb on + strand, within B158DRAFT_2381at 552.940 kb on + strand, within B158DRAFT_2381at 552.940 kb on + strand, within B158DRAFT_2381at 552.948 kb on - strand, within B158DRAFT_2381at 552.948 kb on - strand, within B158DRAFT_2381at 552.948 kb on - strand, within B158DRAFT_2381at 552.948 kb on - strand, within B158DRAFT_2381at 552.948 kb on - strand, within B158DRAFT_2381at 552.948 kb on - strand, within B158DRAFT_2381at 552.948 kb on - strand, within B158DRAFT_2381at 552.948 kb on - strand, within B158DRAFT_2381at 552.948 kb on - strand, within B158DRAFT_2381at 552.948 kb on - strand, within B158DRAFT_2381at 552.948 kb on - strand, within B158DRAFT_2381at 552.948 kb on - strand, within B158DRAFT_2381at 552.948 kb on - strand, within B158DRAFT_2381at 552.948 kb on - strand, within B158DRAFT_2381at 552.948 kb on - strand, within B158DRAFT_2381at 552.950 kb on + strand, within B158DRAFT_2381at 552.968 kb on + strand, within B158DRAFT_2381at 552.976 kb on - strand, within B158DRAFT_2381at 552.989 kb on + strand, within B158DRAFT_2381at 552.989 kb on + strand, within B158DRAFT_2381at 552.989 kb on + strand, within B158DRAFT_2381at 552.989 kb on + strand, within B158DRAFT_2381at 552.997 kb on - strand, within B158DRAFT_2381at 553.039 kb on + strand, within B158DRAFT_2381at 553.039 kb on + strand, within B158DRAFT_2381at 553.167 kb on + strand, within B158DRAFT_2381at 553.169 kb on + strand, within B158DRAFT_2381at 553.196 kb on - strand, within B158DRAFT_2381at 553.214 kb on + strand, within B158DRAFT_2381at 553.222 kb on - strand, within B158DRAFT_2381at 553.268 kb on + strand, within B158DRAFT_2381at 553.289 kb on + strand, within B158DRAFT_2381at 553.376 kb on - strandat 553.390 kb on + strandat 553.398 kb on - strandat 553.498 kb on - strand, within B158DRAFT_2382at 553.508 kb on - strand, within B158DRAFT_2382at 553.534 kb on + strand, within B158DRAFT_2382at 553.542 kb on - strand, within B158DRAFT_2382at 553.542 kb on - strandat 553.569 kb on + strand, within B158DRAFT_2382at 553.616 kb on - strand, within B158DRAFT_2382at 553.620 kb on + strand, within B158DRAFT_2382at 553.628 kb on - strand, within B158DRAFT_2382at 553.643 kb on + strand, within B158DRAFT_2382at 553.688 kb on + strand, within B158DRAFT_2382at 553.688 kb on + strand, within B158DRAFT_2382at 553.688 kb on + strand, within B158DRAFT_2382at 553.693 kb on + strand, within B158DRAFT_2382at 553.693 kb on + strand, within B158DRAFT_2382at 553.693 kb on + strand, within B158DRAFT_2382at 553.693 kb on + strand, within B158DRAFT_2382at 553.696 kb on - strand, within B158DRAFT_2382at 553.696 kb on - strand, within B158DRAFT_2382at 553.696 kb on - strand, within B158DRAFT_2382at 553.701 kb on - strand, within B158DRAFT_2382at 553.701 kb on - strand, within B158DRAFT_2382at 553.812 kb on + strandat 553.852 kb on - strandat 554.034 kb on + strand, within B158DRAFT_2383at 554.034 kb on + strand, within B158DRAFT_2383at 554.173 kb on + strand, within B158DRAFT_2383at 554.203 kb on + strand, within B158DRAFT_2383at 554.214 kb on + strand, within B158DRAFT_2383at 554.316 kb on + strand, within B158DRAFT_2383at 554.316 kb on + strand, within B158DRAFT_2383at 554.316 kb on + strand, within B158DRAFT_2383at 554.316 kb on + strand, within B158DRAFT_2383at 554.316 kb on + strand, within B158DRAFT_2383at 554.359 kb on - strand, within B158DRAFT_2383at 554.417 kb on + strand, within B158DRAFT_2383at 554.427 kb on + strand, within B158DRAFT_2383at 554.427 kb on + strand, within B158DRAFT_2383at 554.427 kb on + strand, within B158DRAFT_2383at 554.432 kb on + strand, within B158DRAFT_2383at 554.432 kb on + strand, within B158DRAFT_2383at 554.435 kb on - strand, within B158DRAFT_2383at 554.435 kb on - strand, within B158DRAFT_2383at 554.440 kb on - strand, within B158DRAFT_2383at 554.440 kb on - strand, within B158DRAFT_2383at 554.489 kb on + strand, within B158DRAFT_2383at 554.489 kb on + strand, within B158DRAFT_2383at 554.497 kb on - strand, within B158DRAFT_2383at 554.539 kb on - strand, within B158DRAFT_2383at 554.635 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrite 20 mM
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552,912 + B158DRAFT_2381 0.21 +1.8
552,920 - B158DRAFT_2381 0.22 +2.2
552,925 + B158DRAFT_2381 0.23 +4.2
552,933 - B158DRAFT_2381 0.24 +2.1
552,933 - B158DRAFT_2381 0.24 +0.5
552,933 - B158DRAFT_2381 0.24 +2.7
552,940 + B158DRAFT_2381 0.26 +1.4
552,940 + B158DRAFT_2381 0.26 +3.6
552,940 + B158DRAFT_2381 0.26 +2.9
552,940 + B158DRAFT_2381 0.26 +0.5
552,940 + B158DRAFT_2381 0.26 +2.8
552,940 + B158DRAFT_2381 0.26 +2.4
552,940 + B158DRAFT_2381 0.26 +0.5
552,940 + B158DRAFT_2381 0.26 +2.6
552,940 + B158DRAFT_2381 0.26 +2.7
552,940 + B158DRAFT_2381 0.26 +3.0
552,940 + B158DRAFT_2381 0.26 +2.5
552,948 - B158DRAFT_2381 0.27 +2.3
552,948 - B158DRAFT_2381 0.27 -0.3
552,948 - B158DRAFT_2381 0.27 +1.6
552,948 - B158DRAFT_2381 0.27 +3.0
552,948 - B158DRAFT_2381 0.27 +1.6
552,948 - B158DRAFT_2381 0.27 +1.3
552,948 - B158DRAFT_2381 0.27 +2.3
552,948 - B158DRAFT_2381 0.27 +2.2
552,948 - B158DRAFT_2381 0.27 +2.8
552,948 - B158DRAFT_2381 0.27 +2.6
552,948 - B158DRAFT_2381 0.27 +1.9
552,948 - B158DRAFT_2381 0.27 +3.7
552,948 - B158DRAFT_2381 0.27 +1.3
552,948 - B158DRAFT_2381 0.27 +2.7
552,948 - B158DRAFT_2381 0.27 +1.2
552,950 + B158DRAFT_2381 0.27 +2.0
552,968 + B158DRAFT_2381 0.31 +2.4
552,976 - B158DRAFT_2381 0.32 +2.2
552,989 + B158DRAFT_2381 0.34 +2.6
552,989 + B158DRAFT_2381 0.34 +3.0
552,989 + B158DRAFT_2381 0.34 +2.7
552,989 + B158DRAFT_2381 0.34 +3.0
552,997 - B158DRAFT_2381 0.36 +1.7
553,039 + B158DRAFT_2381 0.43 +2.5
553,039 + B158DRAFT_2381 0.43 +2.0
553,167 + B158DRAFT_2381 0.66 +0.7
553,169 + B158DRAFT_2381 0.66 +2.6
553,196 - B158DRAFT_2381 0.71 +1.9
553,214 + B158DRAFT_2381 0.74 +1.7
553,222 - B158DRAFT_2381 0.75 +1.9
553,268 + B158DRAFT_2381 0.83 +3.1
553,289 + B158DRAFT_2381 0.87 +2.4
553,376 - -0.8
553,390 + +0.2
553,398 - -3.0
553,498 - B158DRAFT_2382 0.16 +1.4
553,508 - B158DRAFT_2382 0.18 -0.5
553,534 + B158DRAFT_2382 0.25 -2.1
553,542 - B158DRAFT_2382 0.27 +0.3
553,542 - +1.6
553,569 + B158DRAFT_2382 0.33 -1.9
553,616 - B158DRAFT_2382 0.44 -0.3
553,620 + B158DRAFT_2382 0.45 -0.7
553,628 - B158DRAFT_2382 0.47 +0.3
553,643 + B158DRAFT_2382 0.51 -0.8
553,688 + B158DRAFT_2382 0.62 +0.4
553,688 + B158DRAFT_2382 0.62 -1.5
553,688 + B158DRAFT_2382 0.62 -0.5
553,693 + B158DRAFT_2382 0.63 +1.5
553,693 + B158DRAFT_2382 0.63 -0.6
553,693 + B158DRAFT_2382 0.63 -0.3
553,693 + B158DRAFT_2382 0.63 +0.3
553,696 - B158DRAFT_2382 0.64 -0.7
553,696 - B158DRAFT_2382 0.64 +0.2
553,696 - B158DRAFT_2382 0.64 +1.7
553,701 - B158DRAFT_2382 0.65 -0.5
553,701 - B158DRAFT_2382 0.65 -0.8
553,812 + -0.2
553,852 - -1.4
554,034 + B158DRAFT_2383 0.21 -1.6
554,034 + B158DRAFT_2383 0.21 -0.6
554,173 + B158DRAFT_2383 0.38 -1.3
554,203 + B158DRAFT_2383 0.42 -0.4
554,214 + B158DRAFT_2383 0.43 -1.8
554,316 + B158DRAFT_2383 0.56 -1.7
554,316 + B158DRAFT_2383 0.56 -0.4
554,316 + B158DRAFT_2383 0.56 -1.0
554,316 + B158DRAFT_2383 0.56 -1.8
554,316 + B158DRAFT_2383 0.56 +0.3
554,359 - B158DRAFT_2383 0.62 -1.3
554,417 + B158DRAFT_2383 0.69 -1.2
554,427 + B158DRAFT_2383 0.70 -0.2
554,427 + B158DRAFT_2383 0.70 +0.1
554,427 + B158DRAFT_2383 0.70 -1.8
554,432 + B158DRAFT_2383 0.71 -1.6
554,432 + B158DRAFT_2383 0.71 -0.8
554,435 - B158DRAFT_2383 0.71 -1.2
554,435 - B158DRAFT_2383 0.71 -2.6
554,440 - B158DRAFT_2383 0.72 -2.8
554,440 - B158DRAFT_2383 0.72 +1.6
554,489 + B158DRAFT_2383 0.78 +0.2
554,489 + B158DRAFT_2383 0.78 +1.0
554,497 - B158DRAFT_2383 0.79 -1.9
554,539 - B158DRAFT_2383 0.84 -0.0
554,635 + -1.5

Or see this region's nucleotide sequence