Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_2375

Experiment: m.b. nitrite 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_2373 and B158DRAFT_2374 overlap by 31 nucleotidesB158DRAFT_2374 and B158DRAFT_2375 are separated by 5 nucleotidesB158DRAFT_2375 and B158DRAFT_2376 are separated by 7 nucleotidesB158DRAFT_2376 and B158DRAFT_2377 are separated by 258 nucleotides B158DRAFT_2373: B158DRAFT_2373 - Putative lipid carrier protein, at 544,090 to 544,662 _2373 B158DRAFT_2374: B158DRAFT_2374 - Collagenase and related proteases, at 544,632 to 545,513 _2374 B158DRAFT_2375: B158DRAFT_2375 - Collagenase and related proteases, at 545,519 to 546,508 _2375 B158DRAFT_2376: B158DRAFT_2376 - Chorismate mutase, at 546,516 to 546,797 _2376 B158DRAFT_2377: B158DRAFT_2377 - gamma-glutamyltranspeptidase, at 547,056 to 548,792 _2377 Position (kb) 545 546 547Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 544.530 kb on - strand, within B158DRAFT_2373at 544.658 kb on + strandat 544.665 kb on + strandat 544.690 kb on - strandat 544.704 kb on + strandat 544.731 kb on + strand, within B158DRAFT_2374at 544.731 kb on + strand, within B158DRAFT_2374at 544.744 kb on - strand, within B158DRAFT_2374at 544.870 kb on + strand, within B158DRAFT_2374at 544.870 kb on + strand, within B158DRAFT_2374at 544.870 kb on + strand, within B158DRAFT_2374at 544.878 kb on - strand, within B158DRAFT_2374at 544.878 kb on - strand, within B158DRAFT_2374at 544.878 kb on - strand, within B158DRAFT_2374at 544.878 kb on - strand, within B158DRAFT_2374at 544.883 kb on - strand, within B158DRAFT_2374at 544.895 kb on - strand, within B158DRAFT_2374at 544.895 kb on - strand, within B158DRAFT_2374at 544.895 kb on - strand, within B158DRAFT_2374at 544.962 kb on - strand, within B158DRAFT_2374at 544.987 kb on - strand, within B158DRAFT_2374at 544.987 kb on - strand, within B158DRAFT_2374at 544.996 kb on + strand, within B158DRAFT_2374at 544.996 kb on + strand, within B158DRAFT_2374at 544.996 kb on + strand, within B158DRAFT_2374at 544.996 kb on + strand, within B158DRAFT_2374at 544.996 kb on + strand, within B158DRAFT_2374at 545.004 kb on - strand, within B158DRAFT_2374at 545.004 kb on - strand, within B158DRAFT_2374at 545.004 kb on - strand, within B158DRAFT_2374at 545.004 kb on - strand, within B158DRAFT_2374at 545.009 kb on - strand, within B158DRAFT_2374at 545.209 kb on + strand, within B158DRAFT_2374at 545.282 kb on + strand, within B158DRAFT_2374at 545.293 kb on + strand, within B158DRAFT_2374at 545.304 kb on + strand, within B158DRAFT_2374at 545.304 kb on + strand, within B158DRAFT_2374at 545.362 kb on + strand, within B158DRAFT_2374at 545.398 kb on - strand, within B158DRAFT_2374at 545.398 kb on - strand, within B158DRAFT_2374at 545.422 kb on - strand, within B158DRAFT_2374at 545.466 kb on + strandat 545.474 kb on - strandat 545.661 kb on + strand, within B158DRAFT_2375at 545.667 kb on + strand, within B158DRAFT_2375at 545.676 kb on + strand, within B158DRAFT_2375at 545.679 kb on - strand, within B158DRAFT_2375at 545.684 kb on - strand, within B158DRAFT_2375at 545.750 kb on + strand, within B158DRAFT_2375at 545.757 kb on - strand, within B158DRAFT_2375at 545.818 kb on + strand, within B158DRAFT_2375at 545.826 kb on - strand, within B158DRAFT_2375at 545.844 kb on + strand, within B158DRAFT_2375at 545.852 kb on - strand, within B158DRAFT_2375at 545.914 kb on + strand, within B158DRAFT_2375at 545.914 kb on + strand, within B158DRAFT_2375at 545.914 kb on + strand, within B158DRAFT_2375at 545.914 kb on + strand, within B158DRAFT_2375at 545.922 kb on - strand, within B158DRAFT_2375at 545.922 kb on - strand, within B158DRAFT_2375at 545.924 kb on - strand, within B158DRAFT_2375at 545.948 kb on + strand, within B158DRAFT_2375at 545.965 kb on + strand, within B158DRAFT_2375at 546.025 kb on + strand, within B158DRAFT_2375at 546.044 kb on + strand, within B158DRAFT_2375at 546.044 kb on + strand, within B158DRAFT_2375at 546.047 kb on - strand, within B158DRAFT_2375at 546.052 kb on - strand, within B158DRAFT_2375at 546.057 kb on + strand, within B158DRAFT_2375at 546.086 kb on + strand, within B158DRAFT_2375at 546.086 kb on + strand, within B158DRAFT_2375at 546.086 kb on + strand, within B158DRAFT_2375at 546.086 kb on + strand, within B158DRAFT_2375at 546.086 kb on + strand, within B158DRAFT_2375at 546.086 kb on + strand, within B158DRAFT_2375at 546.086 kb on + strand, within B158DRAFT_2375at 546.094 kb on - strand, within B158DRAFT_2375at 546.094 kb on - strand, within B158DRAFT_2375at 546.094 kb on - strand, within B158DRAFT_2375at 546.094 kb on - strand, within B158DRAFT_2375at 546.155 kb on + strand, within B158DRAFT_2375at 546.208 kb on - strand, within B158DRAFT_2375at 546.208 kb on - strand, within B158DRAFT_2375at 546.394 kb on - strand, within B158DRAFT_2375at 546.470 kb on - strandat 546.485 kb on - strandat 546.514 kb on + strandat 546.545 kb on + strand, within B158DRAFT_2376at 546.553 kb on - strand, within B158DRAFT_2376at 546.583 kb on + strand, within B158DRAFT_2376at 546.591 kb on - strand, within B158DRAFT_2376at 546.591 kb on - strand, within B158DRAFT_2376at 546.716 kb on + strand, within B158DRAFT_2376at 546.777 kb on + strandat 546.825 kb on - strandat 546.926 kb on + strandat 546.934 kb on - strandat 546.935 kb on - strandat 546.989 kb on + strandat 546.989 kb on + strandat 546.997 kb on - strandat 546.997 kb on - strandat 547.011 kb on + strandat 547.011 kb on + strandat 547.011 kb on + strandat 547.011 kb on + strandat 547.011 kb on + strandat 547.011 kb on + strandat 547.011 kb on + strandat 547.011 kb on + strandat 547.011 kb on + strandat 547.011 kb on + strandat 547.011 kb on + strandat 547.011 kb on + strandat 547.019 kb on - strandat 547.019 kb on - strandat 547.019 kb on - strandat 547.019 kb on - strandat 547.019 kb on - strandat 547.019 kb on - strandat 547.019 kb on - strandat 547.085 kb on - strandat 547.085 kb on - strandat 547.099 kb on + strandat 547.112 kb on - strandat 547.129 kb on + strandat 547.144 kb on - strandat 547.228 kb on - strandat 547.239 kb on - strand, within B158DRAFT_2377at 547.311 kb on + strand, within B158DRAFT_2377at 547.311 kb on + strand, within B158DRAFT_2377at 547.319 kb on - strand, within B158DRAFT_2377at 547.319 kb on - strand, within B158DRAFT_2377at 547.319 kb on - strand, within B158DRAFT_2377at 547.334 kb on + strand, within B158DRAFT_2377at 547.339 kb on - strand, within B158DRAFT_2377at 547.361 kb on - strand, within B158DRAFT_2377at 547.368 kb on - strand, within B158DRAFT_2377at 547.395 kb on - strand, within B158DRAFT_2377at 547.482 kb on + strand, within B158DRAFT_2377at 547.488 kb on - strand, within B158DRAFT_2377at 547.499 kb on + strand, within B158DRAFT_2377at 547.499 kb on + strand, within B158DRAFT_2377at 547.502 kb on - strand, within B158DRAFT_2377

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrite 20 mM
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544,530 - B158DRAFT_2373 0.77 -0.9
544,658 + -1.8
544,665 + -0.2
544,690 - -2.3
544,704 + -0.7
544,731 + B158DRAFT_2374 0.11 -2.4
544,731 + B158DRAFT_2374 0.11 -0.6
544,744 - B158DRAFT_2374 0.13 -0.6
544,870 + B158DRAFT_2374 0.27 -1.0
544,870 + B158DRAFT_2374 0.27 +2.6
544,870 + B158DRAFT_2374 0.27 -1.2
544,878 - B158DRAFT_2374 0.28 -0.4
544,878 - B158DRAFT_2374 0.28 +0.1
544,878 - B158DRAFT_2374 0.28 +0.2
544,878 - B158DRAFT_2374 0.28 -1.8
544,883 - B158DRAFT_2374 0.28 +2.1
544,895 - B158DRAFT_2374 0.30 -1.1
544,895 - B158DRAFT_2374 0.30 -0.6
544,895 - B158DRAFT_2374 0.30 +0.2
544,962 - B158DRAFT_2374 0.37 -1.5
544,987 - B158DRAFT_2374 0.40 -0.4
544,987 - B158DRAFT_2374 0.40 -0.2
544,996 + B158DRAFT_2374 0.41 +0.5
544,996 + B158DRAFT_2374 0.41 -1.8
544,996 + B158DRAFT_2374 0.41 -1.2
544,996 + B158DRAFT_2374 0.41 +0.9
544,996 + B158DRAFT_2374 0.41 -1.0
545,004 - B158DRAFT_2374 0.42 -1.4
545,004 - B158DRAFT_2374 0.42 -1.5
545,004 - B158DRAFT_2374 0.42 +1.4
545,004 - B158DRAFT_2374 0.42 -0.9
545,009 - B158DRAFT_2374 0.43 -1.7
545,209 + B158DRAFT_2374 0.65 -0.1
545,282 + B158DRAFT_2374 0.74 -1.9
545,293 + B158DRAFT_2374 0.75 -1.0
545,304 + B158DRAFT_2374 0.76 -1.4
545,304 + B158DRAFT_2374 0.76 +0.6
545,362 + B158DRAFT_2374 0.83 -1.8
545,398 - B158DRAFT_2374 0.87 -1.8
545,398 - B158DRAFT_2374 0.87 +1.3
545,422 - B158DRAFT_2374 0.90 -2.6
545,466 + -1.0
545,474 - -0.1
545,661 + B158DRAFT_2375 0.14 -0.3
545,667 + B158DRAFT_2375 0.15 -0.5
545,676 + B158DRAFT_2375 0.16 -0.7
545,679 - B158DRAFT_2375 0.16 -2.0
545,684 - B158DRAFT_2375 0.17 +1.1
545,750 + B158DRAFT_2375 0.23 -0.0
545,757 - B158DRAFT_2375 0.24 -0.2
545,818 + B158DRAFT_2375 0.30 -0.3
545,826 - B158DRAFT_2375 0.31 +0.9
545,844 + B158DRAFT_2375 0.33 +0.5
545,852 - B158DRAFT_2375 0.34 -1.7
545,914 + B158DRAFT_2375 0.40 -0.0
545,914 + B158DRAFT_2375 0.40 -1.4
545,914 + B158DRAFT_2375 0.40 -2.1
545,914 + B158DRAFT_2375 0.40 +0.4
545,922 - B158DRAFT_2375 0.41 -0.2
545,922 - B158DRAFT_2375 0.41 +1.0
545,924 - B158DRAFT_2375 0.41 -3.1
545,948 + B158DRAFT_2375 0.43 +1.2
545,965 + B158DRAFT_2375 0.45 -0.0
546,025 + B158DRAFT_2375 0.51 +0.0
546,044 + B158DRAFT_2375 0.53 +1.3
546,044 + B158DRAFT_2375 0.53 -0.4
546,047 - B158DRAFT_2375 0.53 -0.4
546,052 - B158DRAFT_2375 0.54 -2.3
546,057 + B158DRAFT_2375 0.54 -0.4
546,086 + B158DRAFT_2375 0.57 +0.1
546,086 + B158DRAFT_2375 0.57 +0.0
546,086 + B158DRAFT_2375 0.57 -0.3
546,086 + B158DRAFT_2375 0.57 -1.4
546,086 + B158DRAFT_2375 0.57 +0.2
546,086 + B158DRAFT_2375 0.57 -0.7
546,086 + B158DRAFT_2375 0.57 -0.2
546,094 - B158DRAFT_2375 0.58 +0.3
546,094 - B158DRAFT_2375 0.58 -2.0
546,094 - B158DRAFT_2375 0.58 +1.3
546,094 - B158DRAFT_2375 0.58 +0.2
546,155 + B158DRAFT_2375 0.64 -2.4
546,208 - B158DRAFT_2375 0.70 -0.3
546,208 - B158DRAFT_2375 0.70 -0.1
546,394 - B158DRAFT_2375 0.88 -1.0
546,470 - -0.5
546,485 - -0.2
546,514 + +0.7
546,545 + B158DRAFT_2376 0.10 -0.7
546,553 - B158DRAFT_2376 0.13 -1.2
546,583 + B158DRAFT_2376 0.24 +0.5
546,591 - B158DRAFT_2376 0.27 -2.5
546,591 - B158DRAFT_2376 0.27 -0.7
546,716 + B158DRAFT_2376 0.71 +1.2
546,777 + -0.0
546,825 - -1.8
546,926 + -2.9
546,934 - -2.4
546,935 - -2.4
546,989 + -0.7
546,989 + +2.0
546,997 - +0.1
546,997 - -0.6
547,011 + -0.9
547,011 + -1.2
547,011 + -0.6
547,011 + -0.1
547,011 + -0.1
547,011 + +1.2
547,011 + -1.7
547,011 + +2.6
547,011 + -0.2
547,011 + +2.3
547,011 + -0.5
547,011 + -0.5
547,019 - -0.0
547,019 - +0.3
547,019 - -1.0
547,019 - -0.5
547,019 - -1.2
547,019 - -1.5
547,019 - -1.1
547,085 - -1.0
547,085 - -2.6
547,099 + -0.3
547,112 - -0.6
547,129 + -1.4
547,144 - +0.3
547,228 - -1.2
547,239 - B158DRAFT_2377 0.11 +3.7
547,311 + B158DRAFT_2377 0.15 -0.6
547,311 + B158DRAFT_2377 0.15 -0.3
547,319 - B158DRAFT_2377 0.15 -0.3
547,319 - B158DRAFT_2377 0.15 -0.5
547,319 - B158DRAFT_2377 0.15 -0.6
547,334 + B158DRAFT_2377 0.16 +0.2
547,339 - B158DRAFT_2377 0.16 -1.6
547,361 - B158DRAFT_2377 0.18 -1.0
547,368 - B158DRAFT_2377 0.18 -1.2
547,395 - B158DRAFT_2377 0.20 -0.9
547,482 + B158DRAFT_2377 0.25 -0.9
547,488 - B158DRAFT_2377 0.25 +0.9
547,499 + B158DRAFT_2377 0.26 -1.8
547,499 + B158DRAFT_2377 0.26 +0.0
547,502 - B158DRAFT_2377 0.26 -2.0

Or see this region's nucleotide sequence