Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_2276

Experiment: m.b. nitrite 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_2275 and B158DRAFT_2276 are separated by 373 nucleotidesB158DRAFT_2276 and B158DRAFT_2277 are separated by 305 nucleotides B158DRAFT_2275: B158DRAFT_2275 - 23S rRNA (uracil-5-)-methyltransferase RumA, at 439,641 to 440,987 _2275 B158DRAFT_2276: B158DRAFT_2276 - hypothetical protein, at 441,361 to 441,960 _2276 B158DRAFT_2277: B158DRAFT_2277 - (p)ppGpp synthetase, RelA/SpoT family, at 442,266 to 444,476 _2277 Position (kb) 441 442Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 440.374 kb on - strand, within B158DRAFT_2275at 440.381 kb on - strand, within B158DRAFT_2275at 440.439 kb on - strand, within B158DRAFT_2275at 440.473 kb on + strand, within B158DRAFT_2275at 440.478 kb on + strand, within B158DRAFT_2275at 440.481 kb on - strand, within B158DRAFT_2275at 440.483 kb on + strand, within B158DRAFT_2275at 440.483 kb on + strand, within B158DRAFT_2275at 440.484 kb on - strand, within B158DRAFT_2275at 440.484 kb on - strand, within B158DRAFT_2275at 440.491 kb on - strand, within B158DRAFT_2275at 440.491 kb on - strand, within B158DRAFT_2275at 440.491 kb on - strand, within B158DRAFT_2275at 440.491 kb on - strand, within B158DRAFT_2275at 440.550 kb on - strand, within B158DRAFT_2275at 440.575 kb on - strand, within B158DRAFT_2275at 440.595 kb on + strand, within B158DRAFT_2275at 440.595 kb on + strand, within B158DRAFT_2275at 440.626 kb on + strand, within B158DRAFT_2275at 440.626 kb on + strand, within B158DRAFT_2275at 440.626 kb on + strand, within B158DRAFT_2275at 440.628 kb on + strand, within B158DRAFT_2275at 440.628 kb on + strand, within B158DRAFT_2275at 440.634 kb on - strand, within B158DRAFT_2275at 440.634 kb on - strand, within B158DRAFT_2275at 440.663 kb on + strand, within B158DRAFT_2275at 440.671 kb on - strand, within B158DRAFT_2275at 440.671 kb on - strand, within B158DRAFT_2275at 440.673 kb on + strand, within B158DRAFT_2275at 440.682 kb on + strand, within B158DRAFT_2275at 440.683 kb on - strand, within B158DRAFT_2275at 440.683 kb on - strand, within B158DRAFT_2275at 440.702 kb on - strand, within B158DRAFT_2275at 440.707 kb on + strand, within B158DRAFT_2275at 440.707 kb on + strand, within B158DRAFT_2275at 440.733 kb on - strand, within B158DRAFT_2275at 440.741 kb on - strand, within B158DRAFT_2275at 440.830 kb on - strand, within B158DRAFT_2275at 440.901 kb on + strandat 440.901 kb on + strandat 440.901 kb on + strandat 440.901 kb on + strandat 440.901 kb on + strandat 440.901 kb on + strandat 440.901 kb on + strandat 440.909 kb on - strandat 440.909 kb on - strandat 440.909 kb on - strandat 440.909 kb on - strandat 440.909 kb on - strandat 440.909 kb on - strandat 440.909 kb on - strandat 440.947 kb on + strandat 440.962 kb on - strandat 441.000 kb on - strandat 441.209 kb on + strandat 441.228 kb on + strandat 441.244 kb on - strandat 441.261 kb on + strandat 441.341 kb on + strandat 441.349 kb on - strandat 441.349 kb on - strandat 441.418 kb on + strandat 441.500 kb on + strand, within B158DRAFT_2276at 441.508 kb on - strand, within B158DRAFT_2276at 441.520 kb on + strand, within B158DRAFT_2276at 441.528 kb on - strand, within B158DRAFT_2276at 441.829 kb on + strand, within B158DRAFT_2276at 441.854 kb on - strand, within B158DRAFT_2276at 441.887 kb on + strand, within B158DRAFT_2276at 441.970 kb on - strandat 441.990 kb on - strandat 442.330 kb on + strandat 442.338 kb on - strandat 442.338 kb on - strandat 442.338 kb on - strandat 442.338 kb on - strandat 442.338 kb on - strandat 442.338 kb on - strandat 442.338 kb on - strandat 442.361 kb on - strandat 442.414 kb on - strandat 442.453 kb on + strandat 442.453 kb on + strandat 442.453 kb on + strandat 442.463 kb on + strandat 442.595 kb on + strand, within B158DRAFT_2277at 442.595 kb on + strand, within B158DRAFT_2277at 442.603 kb on + strand, within B158DRAFT_2277at 442.603 kb on + strand, within B158DRAFT_2277at 442.603 kb on + strand, within B158DRAFT_2277at 442.603 kb on + strand, within B158DRAFT_2277at 442.603 kb on + strand, within B158DRAFT_2277at 442.603 kb on + strand, within B158DRAFT_2277at 442.603 kb on + strand, within B158DRAFT_2277at 442.603 kb on + strand, within B158DRAFT_2277at 442.611 kb on - strand, within B158DRAFT_2277at 442.611 kb on - strand, within B158DRAFT_2277at 442.611 kb on - strand, within B158DRAFT_2277at 442.611 kb on - strand, within B158DRAFT_2277at 442.611 kb on - strand, within B158DRAFT_2277at 442.611 kb on - strand, within B158DRAFT_2277at 442.611 kb on - strand, within B158DRAFT_2277at 442.611 kb on - strand, within B158DRAFT_2277at 442.611 kb on - strand, within B158DRAFT_2277at 442.613 kb on + strand, within B158DRAFT_2277at 442.613 kb on + strand, within B158DRAFT_2277at 442.613 kb on + strand, within B158DRAFT_2277at 442.613 kb on + strand, within B158DRAFT_2277at 442.613 kb on + strand, within B158DRAFT_2277at 442.613 kb on + strand, within B158DRAFT_2277at 442.613 kb on + strand, within B158DRAFT_2277at 442.613 kb on + strand, within B158DRAFT_2277at 442.613 kb on + strand, within B158DRAFT_2277at 442.613 kb on + strand, within B158DRAFT_2277at 442.613 kb on + strand, within B158DRAFT_2277at 442.613 kb on + strand, within B158DRAFT_2277at 442.613 kb on + strand, within B158DRAFT_2277at 442.613 kb on + strand, within B158DRAFT_2277at 442.621 kb on - strand, within B158DRAFT_2277at 442.621 kb on - strand, within B158DRAFT_2277at 442.621 kb on - strand, within B158DRAFT_2277at 442.621 kb on - strand, within B158DRAFT_2277at 442.621 kb on - strand, within B158DRAFT_2277at 442.621 kb on - strand, within B158DRAFT_2277at 442.621 kb on - strand, within B158DRAFT_2277at 442.621 kb on - strand, within B158DRAFT_2277at 442.621 kb on - strand, within B158DRAFT_2277at 442.621 kb on - strand, within B158DRAFT_2277at 442.621 kb on - strand, within B158DRAFT_2277at 442.621 kb on - strand, within B158DRAFT_2277at 442.621 kb on - strand, within B158DRAFT_2277at 442.621 kb on - strand, within B158DRAFT_2277at 442.651 kb on - strand, within B158DRAFT_2277at 442.651 kb on - strand, within B158DRAFT_2277at 442.670 kb on + strand, within B158DRAFT_2277at 442.670 kb on + strand, within B158DRAFT_2277at 442.671 kb on + strand, within B158DRAFT_2277at 442.796 kb on - strand, within B158DRAFT_2277at 442.812 kb on + strand, within B158DRAFT_2277at 442.891 kb on + strand, within B158DRAFT_2277at 442.899 kb on - strand, within B158DRAFT_2277at 442.903 kb on + strand, within B158DRAFT_2277

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrite 20 mM
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440,374 - B158DRAFT_2275 0.54 -0.0
440,381 - B158DRAFT_2275 0.55 -0.3
440,439 - B158DRAFT_2275 0.59 -1.1
440,473 + B158DRAFT_2275 0.62 -0.7
440,478 + B158DRAFT_2275 0.62 +0.4
440,481 - B158DRAFT_2275 0.62 +1.3
440,483 + B158DRAFT_2275 0.63 -0.1
440,483 + B158DRAFT_2275 0.63 -0.9
440,484 - B158DRAFT_2275 0.63 -0.4
440,484 - B158DRAFT_2275 0.63 -0.7
440,491 - B158DRAFT_2275 0.63 -0.7
440,491 - B158DRAFT_2275 0.63 -0.8
440,491 - B158DRAFT_2275 0.63 -2.2
440,491 - B158DRAFT_2275 0.63 +0.0
440,550 - B158DRAFT_2275 0.67 -0.4
440,575 - B158DRAFT_2275 0.69 +1.4
440,595 + B158DRAFT_2275 0.71 -1.7
440,595 + B158DRAFT_2275 0.71 +1.2
440,626 + B158DRAFT_2275 0.73 -1.4
440,626 + B158DRAFT_2275 0.73 +0.8
440,626 + B158DRAFT_2275 0.73 -1.0
440,628 + B158DRAFT_2275 0.73 -0.6
440,628 + B158DRAFT_2275 0.73 -0.3
440,634 - B158DRAFT_2275 0.74 +0.6
440,634 - B158DRAFT_2275 0.74 -1.0
440,663 + B158DRAFT_2275 0.76 +2.4
440,671 - B158DRAFT_2275 0.76 -0.7
440,671 - B158DRAFT_2275 0.76 -1.5
440,673 + B158DRAFT_2275 0.77 -0.8
440,682 + B158DRAFT_2275 0.77 +0.0
440,683 - B158DRAFT_2275 0.77 -0.8
440,683 - B158DRAFT_2275 0.77 +0.4
440,702 - B158DRAFT_2275 0.79 +0.6
440,707 + B158DRAFT_2275 0.79 -1.3
440,707 + B158DRAFT_2275 0.79 -1.3
440,733 - B158DRAFT_2275 0.81 -0.4
440,741 - B158DRAFT_2275 0.82 -1.3
440,830 - B158DRAFT_2275 0.88 -2.4
440,901 + +0.2
440,901 + +0.6
440,901 + -0.2
440,901 + +0.3
440,901 + -3.1
440,901 + +0.7
440,901 + -2.2
440,909 - +0.4
440,909 - -1.7
440,909 - +1.2
440,909 - -0.8
440,909 - -0.5
440,909 - +0.2
440,909 - +0.1
440,947 + -1.8
440,962 - -1.3
441,000 - -0.8
441,209 + -0.3
441,228 + +0.7
441,244 - -0.5
441,261 + -1.5
441,341 + -0.2
441,349 - -0.5
441,349 - +0.6
441,418 + -1.6
441,500 + B158DRAFT_2276 0.23 +0.4
441,508 - B158DRAFT_2276 0.24 -0.4
441,520 + B158DRAFT_2276 0.27 -0.5
441,528 - B158DRAFT_2276 0.28 -2.5
441,829 + B158DRAFT_2276 0.78 +1.0
441,854 - B158DRAFT_2276 0.82 -0.0
441,887 + B158DRAFT_2276 0.88 -0.4
441,970 - -0.9
441,990 - -1.5
442,330 + +2.3
442,338 - -0.6
442,338 - -0.9
442,338 - -0.6
442,338 - +0.1
442,338 - -1.2
442,338 - +0.5
442,338 - -2.2
442,361 - +0.5
442,414 - -0.2
442,453 + +1.9
442,453 + -0.1
442,453 + -1.1
442,463 + +0.8
442,595 + B158DRAFT_2277 0.15 +1.3
442,595 + B158DRAFT_2277 0.15 +0.2
442,603 + B158DRAFT_2277 0.15 -0.8
442,603 + B158DRAFT_2277 0.15 +2.7
442,603 + B158DRAFT_2277 0.15 +0.7
442,603 + B158DRAFT_2277 0.15 -0.9
442,603 + B158DRAFT_2277 0.15 +0.1
442,603 + B158DRAFT_2277 0.15 +0.3
442,603 + B158DRAFT_2277 0.15 -0.3
442,603 + B158DRAFT_2277 0.15 -1.0
442,611 - B158DRAFT_2277 0.16 -0.1
442,611 - B158DRAFT_2277 0.16 -0.1
442,611 - B158DRAFT_2277 0.16 +0.6
442,611 - B158DRAFT_2277 0.16 -2.3
442,611 - B158DRAFT_2277 0.16 +0.4
442,611 - B158DRAFT_2277 0.16 +0.2
442,611 - B158DRAFT_2277 0.16 -0.8
442,611 - B158DRAFT_2277 0.16 -0.2
442,611 - B158DRAFT_2277 0.16 -1.3
442,613 + B158DRAFT_2277 0.16 -0.4
442,613 + B158DRAFT_2277 0.16 +0.4
442,613 + B158DRAFT_2277 0.16 -2.2
442,613 + B158DRAFT_2277 0.16 -1.3
442,613 + B158DRAFT_2277 0.16 +0.4
442,613 + B158DRAFT_2277 0.16 -1.3
442,613 + B158DRAFT_2277 0.16 -0.5
442,613 + B158DRAFT_2277 0.16 -0.1
442,613 + B158DRAFT_2277 0.16 -0.3
442,613 + B158DRAFT_2277 0.16 -0.2
442,613 + B158DRAFT_2277 0.16 +0.5
442,613 + B158DRAFT_2277 0.16 +1.2
442,613 + B158DRAFT_2277 0.16 +1.8
442,613 + B158DRAFT_2277 0.16 -1.2
442,621 - B158DRAFT_2277 0.16 -0.1
442,621 - B158DRAFT_2277 0.16 -2.4
442,621 - B158DRAFT_2277 0.16 -0.6
442,621 - B158DRAFT_2277 0.16 +0.6
442,621 - B158DRAFT_2277 0.16 -1.0
442,621 - B158DRAFT_2277 0.16 +1.4
442,621 - B158DRAFT_2277 0.16 +0.8
442,621 - B158DRAFT_2277 0.16 +2.6
442,621 - B158DRAFT_2277 0.16 -0.6
442,621 - B158DRAFT_2277 0.16 -0.9
442,621 - B158DRAFT_2277 0.16 -0.9
442,621 - B158DRAFT_2277 0.16 -1.0
442,621 - B158DRAFT_2277 0.16 +0.2
442,621 - B158DRAFT_2277 0.16 -0.4
442,651 - B158DRAFT_2277 0.17 +0.3
442,651 - B158DRAFT_2277 0.17 -1.7
442,670 + B158DRAFT_2277 0.18 -0.6
442,670 + B158DRAFT_2277 0.18 -1.6
442,671 + B158DRAFT_2277 0.18 -0.8
442,796 - B158DRAFT_2277 0.24 +2.2
442,812 + B158DRAFT_2277 0.25 -0.3
442,891 + B158DRAFT_2277 0.28 +0.2
442,899 - B158DRAFT_2277 0.29 +0.0
442,903 + B158DRAFT_2277 0.29 -0.3

Or see this region's nucleotide sequence