Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_2189

Experiment: m.b. nitrite 20 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntB158DRAFT_2187 and B158DRAFT_2188 are separated by 2 nucleotidesB158DRAFT_2188 and B158DRAFT_2189 overlap by 1 nucleotidesB158DRAFT_2189 and B158DRAFT_2190 are separated by 98 nucleotidesB158DRAFT_2190 and B158DRAFT_2191 are separated by 9 nucleotides B158DRAFT_2187: B158DRAFT_2187 - ribonuclease III, bacterial, at 334,482 to 335,171 _2187 B158DRAFT_2188: B158DRAFT_2188 - GTP-binding protein Era, at 335,174 to 336,073 _2188 B158DRAFT_2189: B158DRAFT_2189 - DNA replication and repair protein RecO, at 336,073 to 336,801 _2189 B158DRAFT_2190: B158DRAFT_2190 - pyridoxine 5'-phosphate synthase, at 336,900 to 337,649 _2190 B158DRAFT_2191: B158DRAFT_2191 - holo-[acyl-carrier-protein] synthase, at 337,659 to 338,042 _2191 Position (kb) 336 337Strain fitness (log2 ratio) -2 -1 0 1 2at 335.111 kb on + strandat 335.116 kb on + strandat 335.116 kb on + strandat 335.116 kb on + strandat 335.116 kb on + strandat 336.088 kb on - strandat 336.088 kb on - strandat 336.088 kb on - strandat 336.119 kb on - strandat 336.160 kb on + strand, within B158DRAFT_2189at 336.160 kb on + strand, within B158DRAFT_2189at 336.183 kb on + strand, within B158DRAFT_2189at 336.183 kb on + strand, within B158DRAFT_2189at 336.191 kb on - strand, within B158DRAFT_2189at 336.191 kb on - strand, within B158DRAFT_2189at 336.191 kb on - strand, within B158DRAFT_2189at 336.260 kb on + strand, within B158DRAFT_2189at 336.284 kb on + strand, within B158DRAFT_2189at 336.284 kb on + strand, within B158DRAFT_2189at 336.292 kb on - strand, within B158DRAFT_2189at 336.292 kb on - strand, within B158DRAFT_2189at 336.292 kb on - strand, within B158DRAFT_2189at 336.292 kb on - strand, within B158DRAFT_2189at 336.302 kb on - strand, within B158DRAFT_2189at 336.346 kb on + strand, within B158DRAFT_2189at 336.355 kb on - strand, within B158DRAFT_2189at 336.461 kb on + strand, within B158DRAFT_2189at 336.469 kb on - strand, within B158DRAFT_2189at 336.469 kb on - strand, within B158DRAFT_2189at 336.469 kb on - strand, within B158DRAFT_2189at 336.499 kb on + strand, within B158DRAFT_2189at 336.499 kb on + strand, within B158DRAFT_2189at 336.507 kb on - strand, within B158DRAFT_2189at 336.562 kb on + strand, within B158DRAFT_2189at 336.562 kb on + strand, within B158DRAFT_2189at 336.562 kb on + strand, within B158DRAFT_2189at 336.562 kb on + strand, within B158DRAFT_2189at 336.566 kb on + strand, within B158DRAFT_2189at 336.570 kb on - strand, within B158DRAFT_2189at 336.570 kb on - strand, within B158DRAFT_2189at 336.570 kb on - strand, within B158DRAFT_2189at 336.570 kb on - strand, within B158DRAFT_2189at 336.688 kb on + strand, within B158DRAFT_2189at 336.697 kb on + strand, within B158DRAFT_2189at 336.711 kb on + strand, within B158DRAFT_2189at 336.742 kb on + strandat 336.742 kb on + strandat 336.745 kb on - strandat 336.781 kb on - strandat 336.811 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrite 20 mM
remove
335,111 + -2.1
335,116 + +0.8
335,116 + +1.0
335,116 + +1.6
335,116 + -0.7
336,088 - +0.2
336,088 - -1.1
336,088 - +1.3
336,119 - -2.1
336,160 + B158DRAFT_2189 0.12 +0.3
336,160 + B158DRAFT_2189 0.12 -0.6
336,183 + B158DRAFT_2189 0.15 +0.7
336,183 + B158DRAFT_2189 0.15 +0.3
336,191 - B158DRAFT_2189 0.16 -2.2
336,191 - B158DRAFT_2189 0.16 +1.3
336,191 - B158DRAFT_2189 0.16 -1.0
336,260 + B158DRAFT_2189 0.26 -0.5
336,284 + B158DRAFT_2189 0.29 -1.3
336,284 + B158DRAFT_2189 0.29 +0.9
336,292 - B158DRAFT_2189 0.30 -0.6
336,292 - B158DRAFT_2189 0.30 +0.2
336,292 - B158DRAFT_2189 0.30 +1.3
336,292 - B158DRAFT_2189 0.30 +0.8
336,302 - B158DRAFT_2189 0.31 +0.4
336,346 + B158DRAFT_2189 0.37 +0.6
336,355 - B158DRAFT_2189 0.39 -0.6
336,461 + B158DRAFT_2189 0.53 +0.3
336,469 - B158DRAFT_2189 0.54 -1.1
336,469 - B158DRAFT_2189 0.54 +1.5
336,469 - B158DRAFT_2189 0.54 -0.8
336,499 + B158DRAFT_2189 0.58 +0.4
336,499 + B158DRAFT_2189 0.58 +0.2
336,507 - B158DRAFT_2189 0.60 -1.8
336,562 + B158DRAFT_2189 0.67 -0.9
336,562 + B158DRAFT_2189 0.67 -1.1
336,562 + B158DRAFT_2189 0.67 +1.3
336,562 + B158DRAFT_2189 0.67 -1.0
336,566 + B158DRAFT_2189 0.68 +0.5
336,570 - B158DRAFT_2189 0.68 -0.2
336,570 - B158DRAFT_2189 0.68 +0.9
336,570 - B158DRAFT_2189 0.68 -1.5
336,570 - B158DRAFT_2189 0.68 -0.1
336,688 + B158DRAFT_2189 0.84 -0.4
336,697 + B158DRAFT_2189 0.86 -0.2
336,711 + B158DRAFT_2189 0.88 +1.9
336,742 + +0.3
336,742 + +0.9
336,745 - +1.2
336,781 - +0.7
336,811 - +0.6

Or see this region's nucleotide sequence