Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_2179

Experiment: m.b. nitrite 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_2176 and B158DRAFT_2177 are separated by 83 nucleotidesB158DRAFT_2177 and B158DRAFT_2178 are separated by 29 nucleotidesB158DRAFT_2178 and B158DRAFT_2179 overlap by 10 nucleotidesB158DRAFT_2179 and B158DRAFT_2180 are separated by 243 nucleotides B158DRAFT_2176: B158DRAFT_2176 - folate-binding protein YgfZ, at 323,768 to 324,706 _2176 B158DRAFT_2177: B158DRAFT_2177 - Uncharacterized conserved protein, at 324,790 to 325,044 _2177 B158DRAFT_2178: B158DRAFT_2178 - hypothetical protein, at 325,074 to 325,580 _2178 B158DRAFT_2179: B158DRAFT_2179 - L-aspartate oxidase (EC 1.4.3.16), at 325,571 to 327,187 _2179 B158DRAFT_2180: B158DRAFT_2180 - RNA polymerase, sigma-24 subunit, RpoE, at 327,431 to 328,021 _2180 Position (kb) 325 326 327 328Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 324.658 kb on - strandat 324.738 kb on + strandat 324.754 kb on - strandat 324.754 kb on - strandat 325.100 kb on + strandat 325.100 kb on + strandat 325.108 kb on - strandat 325.137 kb on + strand, within B158DRAFT_2178at 325.153 kb on + strand, within B158DRAFT_2178at 325.153 kb on + strand, within B158DRAFT_2178at 325.186 kb on - strand, within B158DRAFT_2178at 325.257 kb on + strand, within B158DRAFT_2178at 325.315 kb on + strand, within B158DRAFT_2178at 325.332 kb on - strand, within B158DRAFT_2178at 325.444 kb on + strand, within B158DRAFT_2178at 325.531 kb on - strandat 325.534 kb on - strandat 325.534 kb on - strandat 325.591 kb on + strandat 325.612 kb on - strandat 325.637 kb on - strandat 325.641 kb on + strandat 325.641 kb on + strandat 325.649 kb on - strandat 325.649 kb on - strandat 325.649 kb on - strandat 325.680 kb on - strandat 325.847 kb on + strand, within B158DRAFT_2179at 325.934 kb on + strand, within B158DRAFT_2179at 325.966 kb on - strand, within B158DRAFT_2179at 325.981 kb on - strand, within B158DRAFT_2179at 326.052 kb on + strand, within B158DRAFT_2179at 326.052 kb on + strand, within B158DRAFT_2179at 326.052 kb on + strand, within B158DRAFT_2179at 326.391 kb on - strand, within B158DRAFT_2179at 326.391 kb on - strand, within B158DRAFT_2179at 326.485 kb on + strand, within B158DRAFT_2179at 326.494 kb on - strand, within B158DRAFT_2179at 326.499 kb on + strand, within B158DRAFT_2179at 326.499 kb on + strand, within B158DRAFT_2179at 326.507 kb on - strand, within B158DRAFT_2179at 326.512 kb on - strand, within B158DRAFT_2179at 326.554 kb on + strand, within B158DRAFT_2179at 326.554 kb on + strand, within B158DRAFT_2179at 326.745 kb on + strand, within B158DRAFT_2179at 326.745 kb on + strand, within B158DRAFT_2179at 326.745 kb on + strand, within B158DRAFT_2179at 326.753 kb on - strand, within B158DRAFT_2179at 326.753 kb on - strand, within B158DRAFT_2179at 326.753 kb on - strand, within B158DRAFT_2179at 326.769 kb on + strand, within B158DRAFT_2179at 326.860 kb on + strand, within B158DRAFT_2179at 326.901 kb on - strand, within B158DRAFT_2179at 326.911 kb on - strand, within B158DRAFT_2179at 326.911 kb on - strand, within B158DRAFT_2179at 326.941 kb on + strand, within B158DRAFT_2179at 326.941 kb on + strand, within B158DRAFT_2179at 326.941 kb on + strand, within B158DRAFT_2179at 326.941 kb on + strand, within B158DRAFT_2179at 326.949 kb on - strand, within B158DRAFT_2179at 326.949 kb on - strand, within B158DRAFT_2179at 326.949 kb on - strand, within B158DRAFT_2179at 326.949 kb on - strand, within B158DRAFT_2179at 326.949 kb on - strand, within B158DRAFT_2179at 327.012 kb on - strand, within B158DRAFT_2179at 327.139 kb on + strandat 327.242 kb on + strandat 327.348 kb on + strandat 327.353 kb on + strandat 327.353 kb on + strandat 327.353 kb on + strandat 327.361 kb on - strandat 327.361 kb on - strandat 327.361 kb on - strandat 327.361 kb on - strandat 327.361 kb on - strandat 327.361 kb on - strandat 327.413 kb on - strandat 327.433 kb on + strandat 327.433 kb on - strandat 327.439 kb on + strandat 327.443 kb on + strandat 327.443 kb on + strandat 327.443 kb on + strandat 327.443 kb on + strandat 327.451 kb on - strandat 327.468 kb on - strandat 327.535 kb on - strand, within B158DRAFT_2180at 327.553 kb on - strand, within B158DRAFT_2180at 327.569 kb on - strand, within B158DRAFT_2180at 327.595 kb on + strand, within B158DRAFT_2180at 327.603 kb on - strand, within B158DRAFT_2180at 327.665 kb on + strand, within B158DRAFT_2180at 327.702 kb on + strand, within B158DRAFT_2180at 327.708 kb on + strand, within B158DRAFT_2180at 327.856 kb on + strand, within B158DRAFT_2180at 327.917 kb on + strand, within B158DRAFT_2180at 327.917 kb on + strand, within B158DRAFT_2180at 327.917 kb on + strand, within B158DRAFT_2180at 327.917 kb on + strand, within B158DRAFT_2180at 327.925 kb on - strand, within B158DRAFT_2180at 327.935 kb on + strand, within B158DRAFT_2180at 327.935 kb on + strand, within B158DRAFT_2180at 328.006 kb on + strandat 328.006 kb on + strandat 328.006 kb on + strandat 328.006 kb on + strandat 328.006 kb on + strandat 328.014 kb on - strandat 328.014 kb on - strandat 328.084 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrite 20 mM
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324,658 - +3.9
324,738 + -0.9
324,754 - -0.6
324,754 - -0.9
325,100 + +3.3
325,100 + -3.2
325,108 - +1.0
325,137 + B158DRAFT_2178 0.12 +0.2
325,153 + B158DRAFT_2178 0.16 -0.8
325,153 + B158DRAFT_2178 0.16 +0.5
325,186 - B158DRAFT_2178 0.22 -0.6
325,257 + B158DRAFT_2178 0.36 -2.5
325,315 + B158DRAFT_2178 0.48 -0.5
325,332 - B158DRAFT_2178 0.51 -1.0
325,444 + B158DRAFT_2178 0.73 +0.4
325,531 - -1.0
325,534 - +0.3
325,534 - -1.1
325,591 + -1.5
325,612 - -0.5
325,637 - -0.5
325,641 + -1.4
325,641 + +0.3
325,649 - -0.6
325,649 - -0.4
325,649 - -0.9
325,680 - +2.1
325,847 + B158DRAFT_2179 0.17 +0.5
325,934 + B158DRAFT_2179 0.22 -0.9
325,966 - B158DRAFT_2179 0.24 +0.9
325,981 - B158DRAFT_2179 0.25 +0.7
326,052 + B158DRAFT_2179 0.30 -0.2
326,052 + B158DRAFT_2179 0.30 +0.9
326,052 + B158DRAFT_2179 0.30 +1.8
326,391 - B158DRAFT_2179 0.51 +0.5
326,391 - B158DRAFT_2179 0.51 +1.6
326,485 + B158DRAFT_2179 0.57 +0.3
326,494 - B158DRAFT_2179 0.57 +0.3
326,499 + B158DRAFT_2179 0.57 +2.3
326,499 + B158DRAFT_2179 0.57 +1.5
326,507 - B158DRAFT_2179 0.58 +0.7
326,512 - B158DRAFT_2179 0.58 -0.6
326,554 + B158DRAFT_2179 0.61 -0.9
326,554 + B158DRAFT_2179 0.61 -0.1
326,745 + B158DRAFT_2179 0.73 +0.2
326,745 + B158DRAFT_2179 0.73 +0.1
326,745 + B158DRAFT_2179 0.73 +0.6
326,753 - B158DRAFT_2179 0.73 -0.4
326,753 - B158DRAFT_2179 0.73 -0.0
326,753 - B158DRAFT_2179 0.73 -0.4
326,769 + B158DRAFT_2179 0.74 -1.0
326,860 + B158DRAFT_2179 0.80 +1.2
326,901 - B158DRAFT_2179 0.82 -0.4
326,911 - B158DRAFT_2179 0.83 +0.6
326,911 - B158DRAFT_2179 0.83 -1.0
326,941 + B158DRAFT_2179 0.85 -0.9
326,941 + B158DRAFT_2179 0.85 +0.6
326,941 + B158DRAFT_2179 0.85 -0.5
326,941 + B158DRAFT_2179 0.85 -0.7
326,949 - B158DRAFT_2179 0.85 +0.2
326,949 - B158DRAFT_2179 0.85 +0.6
326,949 - B158DRAFT_2179 0.85 -0.3
326,949 - B158DRAFT_2179 0.85 +0.6
326,949 - B158DRAFT_2179 0.85 +1.0
327,012 - B158DRAFT_2179 0.89 +1.0
327,139 + +0.4
327,242 + -0.6
327,348 + +1.6
327,353 + -0.2
327,353 + +1.8
327,353 + +0.3
327,361 - +1.1
327,361 - +0.5
327,361 - +0.3
327,361 - +1.5
327,361 - +0.2
327,361 - +1.2
327,413 - +0.0
327,433 + -1.6
327,433 - +2.3
327,439 + +0.7
327,443 + +2.2
327,443 + -0.4
327,443 + -0.7
327,443 + +2.3
327,451 - +0.6
327,468 - +0.9
327,535 - B158DRAFT_2180 0.18 -0.4
327,553 - B158DRAFT_2180 0.21 +0.6
327,569 - B158DRAFT_2180 0.23 +1.3
327,595 + B158DRAFT_2180 0.28 +1.2
327,603 - B158DRAFT_2180 0.29 +0.1
327,665 + B158DRAFT_2180 0.40 +1.1
327,702 + B158DRAFT_2180 0.46 +0.0
327,708 + B158DRAFT_2180 0.47 +1.1
327,856 + B158DRAFT_2180 0.72 +1.0
327,917 + B158DRAFT_2180 0.82 +0.8
327,917 + B158DRAFT_2180 0.82 +1.6
327,917 + B158DRAFT_2180 0.82 +1.9
327,917 + B158DRAFT_2180 0.82 +1.2
327,925 - B158DRAFT_2180 0.84 +1.7
327,935 + B158DRAFT_2180 0.85 +0.4
327,935 + B158DRAFT_2180 0.85 +0.4
328,006 + +1.0
328,006 + -0.4
328,006 + +0.5
328,006 + +2.2
328,006 + +0.2
328,014 - -0.7
328,014 - -1.6
328,084 + -0.8

Or see this region's nucleotide sequence