Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_2001

Experiment: m.b. nitrite 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_2000 and B158DRAFT_2001 are separated by 24 nucleotidesB158DRAFT_2001 and B158DRAFT_2002 are separated by 137 nucleotidesB158DRAFT_2002 and B158DRAFT_2003 are separated by 14 nucleotidesB158DRAFT_2003 and B158DRAFT_2004 are separated by 25 nucleotides B158DRAFT_2000: B158DRAFT_2000 - Type II secretory pathway, component PulF, at 135,264 to 136,244 _2000 B158DRAFT_2001: B158DRAFT_2001 - hypothetical protein, at 136,269 to 136,850 _2001 B158DRAFT_2002: B158DRAFT_2002 - ribosomal protein S6, at 136,988 to 137,386 _2002 B158DRAFT_2003: B158DRAFT_2003 - ribosomal protein S18, at 137,401 to 137,628 _2003 B158DRAFT_2004: B158DRAFT_2004 - LSU ribosomal protein L9P, at 137,654 to 138,109 _2004 Position (kb) 136 137Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 135.336 kb on - strandat 135.383 kb on + strand, within B158DRAFT_2000at 135.419 kb on - strand, within B158DRAFT_2000at 135.419 kb on - strand, within B158DRAFT_2000at 135.438 kb on + strand, within B158DRAFT_2000at 135.438 kb on + strand, within B158DRAFT_2000at 135.438 kb on + strand, within B158DRAFT_2000at 135.446 kb on - strand, within B158DRAFT_2000at 135.446 kb on - strand, within B158DRAFT_2000at 135.446 kb on - strand, within B158DRAFT_2000at 135.446 kb on - strand, within B158DRAFT_2000at 135.446 kb on - strand, within B158DRAFT_2000at 135.446 kb on - strand, within B158DRAFT_2000at 135.517 kb on - strand, within B158DRAFT_2000at 135.564 kb on - strand, within B158DRAFT_2000at 135.613 kb on + strand, within B158DRAFT_2000at 135.613 kb on + strand, within B158DRAFT_2000at 135.621 kb on - strand, within B158DRAFT_2000at 135.651 kb on - strand, within B158DRAFT_2000at 135.679 kb on - strand, within B158DRAFT_2000at 135.681 kb on - strand, within B158DRAFT_2000at 135.681 kb on - strand, within B158DRAFT_2000at 135.681 kb on - strand, within B158DRAFT_2000at 135.703 kb on + strand, within B158DRAFT_2000at 135.703 kb on + strand, within B158DRAFT_2000at 135.778 kb on - strand, within B158DRAFT_2000at 135.779 kb on - strand, within B158DRAFT_2000at 135.788 kb on + strand, within B158DRAFT_2000at 135.837 kb on - strand, within B158DRAFT_2000at 135.842 kb on + strand, within B158DRAFT_2000at 135.842 kb on + strand, within B158DRAFT_2000at 135.842 kb on + strand, within B158DRAFT_2000at 135.850 kb on - strand, within B158DRAFT_2000at 135.899 kb on - strand, within B158DRAFT_2000at 135.928 kb on - strand, within B158DRAFT_2000at 135.973 kb on + strand, within B158DRAFT_2000at 135.973 kb on + strand, within B158DRAFT_2000at 135.973 kb on + strand, within B158DRAFT_2000at 135.976 kb on - strand, within B158DRAFT_2000at 135.978 kb on + strand, within B158DRAFT_2000at 135.981 kb on - strand, within B158DRAFT_2000at 135.981 kb on - strand, within B158DRAFT_2000at 135.981 kb on - strand, within B158DRAFT_2000at 135.981 kb on - strand, within B158DRAFT_2000at 135.981 kb on - strand, within B158DRAFT_2000at 135.996 kb on - strand, within B158DRAFT_2000at 135.998 kb on + strand, within B158DRAFT_2000at 135.998 kb on + strand, within B158DRAFT_2000at 135.998 kb on + strand, within B158DRAFT_2000at 135.998 kb on + strand, within B158DRAFT_2000at 136.005 kb on + strand, within B158DRAFT_2000at 136.010 kb on + strand, within B158DRAFT_2000at 136.076 kb on + strand, within B158DRAFT_2000at 136.076 kb on + strand, within B158DRAFT_2000at 136.084 kb on - strand, within B158DRAFT_2000at 136.084 kb on - strand, within B158DRAFT_2000at 136.084 kb on - strand, within B158DRAFT_2000at 136.084 kb on - strand, within B158DRAFT_2000at 136.084 kb on - strand, within B158DRAFT_2000at 136.091 kb on - strand, within B158DRAFT_2000at 136.133 kb on + strand, within B158DRAFT_2000at 136.171 kb on + strandat 136.179 kb on - strandat 136.179 kb on - strandat 136.186 kb on + strandat 136.339 kb on + strand, within B158DRAFT_2001at 136.349 kb on + strand, within B158DRAFT_2001at 136.357 kb on - strand, within B158DRAFT_2001at 136.357 kb on - strand, within B158DRAFT_2001at 136.357 kb on - strand, within B158DRAFT_2001at 136.364 kb on - strand, within B158DRAFT_2001at 136.368 kb on + strand, within B158DRAFT_2001at 136.376 kb on - strand, within B158DRAFT_2001at 136.397 kb on + strand, within B158DRAFT_2001at 136.466 kb on - strand, within B158DRAFT_2001at 136.571 kb on + strand, within B158DRAFT_2001at 136.571 kb on + strand, within B158DRAFT_2001at 136.571 kb on + strand, within B158DRAFT_2001at 136.571 kb on + strand, within B158DRAFT_2001at 136.571 kb on + strand, within B158DRAFT_2001at 136.571 kb on + strand, within B158DRAFT_2001at 136.571 kb on + strand, within B158DRAFT_2001at 136.579 kb on - strand, within B158DRAFT_2001at 136.579 kb on - strand, within B158DRAFT_2001at 136.579 kb on - strand, within B158DRAFT_2001at 136.629 kb on + strand, within B158DRAFT_2001at 136.662 kb on + strand, within B158DRAFT_2001at 136.705 kb on - strand, within B158DRAFT_2001at 136.705 kb on - strand, within B158DRAFT_2001at 136.728 kb on - strand, within B158DRAFT_2001at 136.838 kb on - strandat 136.840 kb on + strandat 137.729 kb on + strand, within B158DRAFT_2004at 137.760 kb on - strand, within B158DRAFT_2004at 137.800 kb on + strand, within B158DRAFT_2004at 137.846 kb on + strand, within B158DRAFT_2004at 137.846 kb on + strand, within B158DRAFT_2004at 137.846 kb on + strand, within B158DRAFT_2004

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrite 20 mM
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135,336 - +1.3
135,383 + B158DRAFT_2000 0.12 -0.9
135,419 - B158DRAFT_2000 0.16 -1.1
135,419 - B158DRAFT_2000 0.16 +0.6
135,438 + B158DRAFT_2000 0.18 -1.6
135,438 + B158DRAFT_2000 0.18 -1.6
135,438 + B158DRAFT_2000 0.18 -1.2
135,446 - B158DRAFT_2000 0.19 -0.9
135,446 - B158DRAFT_2000 0.19 +0.1
135,446 - B158DRAFT_2000 0.19 +1.1
135,446 - B158DRAFT_2000 0.19 +1.2
135,446 - B158DRAFT_2000 0.19 -2.0
135,446 - B158DRAFT_2000 0.19 -0.3
135,517 - B158DRAFT_2000 0.26 -1.2
135,564 - B158DRAFT_2000 0.31 -1.6
135,613 + B158DRAFT_2000 0.36 +0.4
135,613 + B158DRAFT_2000 0.36 -1.2
135,621 - B158DRAFT_2000 0.36 -1.2
135,651 - B158DRAFT_2000 0.39 -0.5
135,679 - B158DRAFT_2000 0.42 -0.3
135,681 - B158DRAFT_2000 0.43 -1.5
135,681 - B158DRAFT_2000 0.43 -0.9
135,681 - B158DRAFT_2000 0.43 -2.2
135,703 + B158DRAFT_2000 0.45 -0.4
135,703 + B158DRAFT_2000 0.45 -0.3
135,778 - B158DRAFT_2000 0.52 -1.9
135,779 - B158DRAFT_2000 0.52 +0.8
135,788 + B158DRAFT_2000 0.53 +0.3
135,837 - B158DRAFT_2000 0.58 -2.1
135,842 + B158DRAFT_2000 0.59 -0.8
135,842 + B158DRAFT_2000 0.59 -2.7
135,842 + B158DRAFT_2000 0.59 -1.2
135,850 - B158DRAFT_2000 0.60 +1.5
135,899 - B158DRAFT_2000 0.65 +0.8
135,928 - B158DRAFT_2000 0.68 +0.9
135,973 + B158DRAFT_2000 0.72 -1.1
135,973 + B158DRAFT_2000 0.72 -2.8
135,973 + B158DRAFT_2000 0.72 -1.2
135,976 - B158DRAFT_2000 0.73 +0.4
135,978 + B158DRAFT_2000 0.73 +0.1
135,981 - B158DRAFT_2000 0.73 +0.5
135,981 - B158DRAFT_2000 0.73 +0.1
135,981 - B158DRAFT_2000 0.73 -2.8
135,981 - B158DRAFT_2000 0.73 -0.5
135,981 - B158DRAFT_2000 0.73 -0.8
135,996 - B158DRAFT_2000 0.75 -0.8
135,998 + B158DRAFT_2000 0.75 -2.5
135,998 + B158DRAFT_2000 0.75 -1.0
135,998 + B158DRAFT_2000 0.75 -0.4
135,998 + B158DRAFT_2000 0.75 -0.5
136,005 + B158DRAFT_2000 0.76 -0.3
136,010 + B158DRAFT_2000 0.76 +0.6
136,076 + B158DRAFT_2000 0.83 -2.2
136,076 + B158DRAFT_2000 0.83 -0.9
136,084 - B158DRAFT_2000 0.84 -1.3
136,084 - B158DRAFT_2000 0.84 -1.2
136,084 - B158DRAFT_2000 0.84 -0.2
136,084 - B158DRAFT_2000 0.84 -1.1
136,084 - B158DRAFT_2000 0.84 -1.2
136,091 - B158DRAFT_2000 0.84 +0.4
136,133 + B158DRAFT_2000 0.89 -1.9
136,171 + +3.1
136,179 - -1.8
136,179 - -1.5
136,186 + -1.7
136,339 + B158DRAFT_2001 0.12 +0.2
136,349 + B158DRAFT_2001 0.14 -1.7
136,357 - B158DRAFT_2001 0.15 +0.0
136,357 - B158DRAFT_2001 0.15 -2.8
136,357 - B158DRAFT_2001 0.15 -0.4
136,364 - B158DRAFT_2001 0.16 -1.6
136,368 + B158DRAFT_2001 0.17 -2.2
136,376 - B158DRAFT_2001 0.18 -0.9
136,397 + B158DRAFT_2001 0.22 +0.8
136,466 - B158DRAFT_2001 0.34 -1.2
136,571 + B158DRAFT_2001 0.52 -1.8
136,571 + B158DRAFT_2001 0.52 +1.8
136,571 + B158DRAFT_2001 0.52 +0.2
136,571 + B158DRAFT_2001 0.52 +2.7
136,571 + B158DRAFT_2001 0.52 +0.4
136,571 + B158DRAFT_2001 0.52 +1.0
136,571 + B158DRAFT_2001 0.52 +0.2
136,579 - B158DRAFT_2001 0.53 -1.8
136,579 - B158DRAFT_2001 0.53 -1.1
136,579 - B158DRAFT_2001 0.53 -1.0
136,629 + B158DRAFT_2001 0.62 -0.0
136,662 + B158DRAFT_2001 0.68 -0.0
136,705 - B158DRAFT_2001 0.75 +0.3
136,705 - B158DRAFT_2001 0.75 +0.2
136,728 - B158DRAFT_2001 0.79 -1.3
136,838 - -0.4
136,840 + +1.3
137,729 + B158DRAFT_2004 0.16 -2.4
137,760 - B158DRAFT_2004 0.23 -0.6
137,800 + B158DRAFT_2004 0.32 +1.0
137,846 + B158DRAFT_2004 0.42 -2.6
137,846 + B158DRAFT_2004 0.42 -0.7
137,846 + B158DRAFT_2004 0.42 -2.3

Or see this region's nucleotide sequence