Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1957

Experiment: m.b. nitrite 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1955 and B158DRAFT_1956 are separated by 97 nucleotidesB158DRAFT_1956 and B158DRAFT_1957 are separated by 210 nucleotidesB158DRAFT_1957 and B158DRAFT_1958 are separated by 59 nucleotidesB158DRAFT_1958 and B158DRAFT_1959 are separated by 9 nucleotides B158DRAFT_1955: B158DRAFT_1955 - HflC protein, at 92,060 to 92,944 _1955 B158DRAFT_1956: B158DRAFT_1956 - Uncharacterized protein conserved in bacteria, at 93,042 to 93,212 _1956 B158DRAFT_1957: B158DRAFT_1957 - Adenylosuccinate synthetase (EC 6.3.4.4), at 93,423 to 94,724 _1957 B158DRAFT_1958: B158DRAFT_1958 - Protein of unknown function (DUF1653)., at 94,784 to 94,996 _1958 B158DRAFT_1959: B158DRAFT_1959 - Uncharacterized conserved protein, at 95,006 to 95,827 _1959 Position (kb) 93 94 95Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 92.437 kb on - strand, within B158DRAFT_1955at 92.489 kb on - strand, within B158DRAFT_1955at 92.507 kb on + strand, within B158DRAFT_1955at 92.507 kb on + strand, within B158DRAFT_1955at 92.507 kb on + strand, within B158DRAFT_1955at 92.515 kb on - strand, within B158DRAFT_1955at 92.558 kb on - strand, within B158DRAFT_1955at 92.767 kb on + strand, within B158DRAFT_1955at 92.841 kb on + strand, within B158DRAFT_1955at 92.841 kb on + strand, within B158DRAFT_1955at 92.841 kb on + strand, within B158DRAFT_1955at 92.841 kb on + strand, within B158DRAFT_1955at 92.841 kb on + strand, within B158DRAFT_1955at 92.841 kb on + strand, within B158DRAFT_1955at 92.841 kb on + strand, within B158DRAFT_1955at 92.849 kb on - strand, within B158DRAFT_1955at 92.849 kb on - strand, within B158DRAFT_1955at 92.849 kb on - strand, within B158DRAFT_1955at 92.849 kb on - strand, within B158DRAFT_1955at 92.991 kb on - strandat 93.102 kb on - strand, within B158DRAFT_1956at 93.138 kb on + strand, within B158DRAFT_1956at 93.138 kb on + strand, within B158DRAFT_1956at 93.176 kb on + strand, within B158DRAFT_1956at 93.183 kb on + strand, within B158DRAFT_1956at 93.183 kb on + strand, within B158DRAFT_1956at 93.188 kb on + strand, within B158DRAFT_1956at 93.188 kb on + strand, within B158DRAFT_1956at 93.188 kb on + strand, within B158DRAFT_1956at 93.188 kb on + strand, within B158DRAFT_1956at 93.188 kb on + strand, within B158DRAFT_1956at 93.191 kb on - strand, within B158DRAFT_1956at 93.196 kb on - strandat 93.196 kb on - strandat 93.196 kb on - strandat 93.196 kb on - strandat 93.196 kb on - strandat 94.741 kb on - strandat 94.830 kb on - strand, within B158DRAFT_1958at 94.862 kb on + strand, within B158DRAFT_1958at 94.862 kb on + strand, within B158DRAFT_1958at 94.868 kb on - strand, within B158DRAFT_1958at 94.919 kb on - strand, within B158DRAFT_1958at 94.927 kb on + strand, within B158DRAFT_1958at 95.044 kb on + strandat 95.072 kb on + strandat 95.103 kb on + strand, within B158DRAFT_1959at 95.114 kb on + strand, within B158DRAFT_1959at 95.125 kb on + strand, within B158DRAFT_1959at 95.133 kb on - strand, within B158DRAFT_1959at 95.133 kb on - strand, within B158DRAFT_1959at 95.194 kb on + strand, within B158DRAFT_1959at 95.194 kb on + strand, within B158DRAFT_1959at 95.202 kb on + strand, within B158DRAFT_1959at 95.210 kb on - strand, within B158DRAFT_1959at 95.210 kb on - strand, within B158DRAFT_1959at 95.210 kb on - strand, within B158DRAFT_1959at 95.347 kb on + strand, within B158DRAFT_1959at 95.355 kb on - strand, within B158DRAFT_1959at 95.362 kb on + strand, within B158DRAFT_1959at 95.362 kb on + strand, within B158DRAFT_1959at 95.377 kb on + strand, within B158DRAFT_1959at 95.385 kb on - strand, within B158DRAFT_1959at 95.385 kb on - strand, within B158DRAFT_1959at 95.385 kb on - strand, within B158DRAFT_1959at 95.437 kb on + strand, within B158DRAFT_1959at 95.453 kb on - strand, within B158DRAFT_1959at 95.638 kb on + strand, within B158DRAFT_1959at 95.646 kb on - strand, within B158DRAFT_1959at 95.646 kb on - strand, within B158DRAFT_1959at 95.683 kb on - strand, within B158DRAFT_1959at 95.715 kb on + strand, within B158DRAFT_1959

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrite 20 mM
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92,437 - B158DRAFT_1955 0.43 +1.3
92,489 - B158DRAFT_1955 0.48 +0.1
92,507 + B158DRAFT_1955 0.51 +1.8
92,507 + B158DRAFT_1955 0.51 +1.3
92,507 + B158DRAFT_1955 0.51 +1.2
92,515 - B158DRAFT_1955 0.51 +0.2
92,558 - B158DRAFT_1955 0.56 -0.5
92,767 + B158DRAFT_1955 0.80 +1.2
92,841 + B158DRAFT_1955 0.88 +1.6
92,841 + B158DRAFT_1955 0.88 -1.4
92,841 + B158DRAFT_1955 0.88 -1.5
92,841 + B158DRAFT_1955 0.88 +1.8
92,841 + B158DRAFT_1955 0.88 +2.0
92,841 + B158DRAFT_1955 0.88 +1.4
92,841 + B158DRAFT_1955 0.88 +2.2
92,849 - B158DRAFT_1955 0.89 +1.5
92,849 - B158DRAFT_1955 0.89 +0.2
92,849 - B158DRAFT_1955 0.89 +1.4
92,849 - B158DRAFT_1955 0.89 +1.4
92,991 - +0.3
93,102 - B158DRAFT_1956 0.35 -1.3
93,138 + B158DRAFT_1956 0.56 +1.5
93,138 + B158DRAFT_1956 0.56 -1.3
93,176 + B158DRAFT_1956 0.78 +1.6
93,183 + B158DRAFT_1956 0.82 -1.2
93,183 + B158DRAFT_1956 0.82 -1.2
93,188 + B158DRAFT_1956 0.85 -1.1
93,188 + B158DRAFT_1956 0.85 +2.1
93,188 + B158DRAFT_1956 0.85 -2.0
93,188 + B158DRAFT_1956 0.85 -0.5
93,188 + B158DRAFT_1956 0.85 -1.4
93,191 - B158DRAFT_1956 0.87 +0.7
93,196 - +0.6
93,196 - -0.6
93,196 - -0.7
93,196 - -0.7
93,196 - +1.0
94,741 - -0.7
94,830 - B158DRAFT_1958 0.22 +2.3
94,862 + B158DRAFT_1958 0.37 +1.3
94,862 + B158DRAFT_1958 0.37 -1.8
94,868 - B158DRAFT_1958 0.39 -1.2
94,919 - B158DRAFT_1958 0.63 -2.3
94,927 + B158DRAFT_1958 0.67 -2.5
95,044 + +0.4
95,072 + +1.4
95,103 + B158DRAFT_1959 0.12 -1.9
95,114 + B158DRAFT_1959 0.13 +0.2
95,125 + B158DRAFT_1959 0.14 -0.7
95,133 - B158DRAFT_1959 0.15 -0.9
95,133 - B158DRAFT_1959 0.15 -2.2
95,194 + B158DRAFT_1959 0.23 +0.1
95,194 + B158DRAFT_1959 0.23 +0.7
95,202 + B158DRAFT_1959 0.24 +1.5
95,210 - B158DRAFT_1959 0.25 +1.8
95,210 - B158DRAFT_1959 0.25 +0.4
95,210 - B158DRAFT_1959 0.25 +0.1
95,347 + B158DRAFT_1959 0.41 -2.9
95,355 - B158DRAFT_1959 0.42 +0.1
95,362 + B158DRAFT_1959 0.43 +0.1
95,362 + B158DRAFT_1959 0.43 +1.2
95,377 + B158DRAFT_1959 0.45 +0.7
95,385 - B158DRAFT_1959 0.46 -0.5
95,385 - B158DRAFT_1959 0.46 -0.9
95,385 - B158DRAFT_1959 0.46 +1.5
95,437 + B158DRAFT_1959 0.52 -1.0
95,453 - B158DRAFT_1959 0.54 +0.8
95,638 + B158DRAFT_1959 0.77 -0.5
95,646 - B158DRAFT_1959 0.78 -0.9
95,646 - B158DRAFT_1959 0.78 -1.2
95,683 - B158DRAFT_1959 0.82 +0.1
95,715 + B158DRAFT_1959 0.86 -1.0

Or see this region's nucleotide sequence