Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1848

Experiment: m.b. nitrite 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1848 and B158DRAFT_1849 are separated by 130 nucleotidesB158DRAFT_1849 and B158DRAFT_1850 are separated by 630 nucleotides B158DRAFT_1848: B158DRAFT_1848 - 23S rRNA. Bacterial LSU, at 1 to 86 _1848 B158DRAFT_1849: B158DRAFT_1849 - 5S rRNA. Bacterial TSU, at 217 to 332 _1849 B158DRAFT_1850: B158DRAFT_1850 - ATP-dependent RNA helicase CsdA (EC 5.99.1.-), at 963 to 2,756 _1850 Position (kb) 0 1Strain fitness (log2 ratio) -2 -1 0 1at 0.356 kb on + strandat 0.356 kb on + strandat 0.411 kb on + strandat 0.416 kb on + strandat 0.419 kb on - strandat 0.421 kb on + strandat 0.421 kb on + strandat 0.424 kb on - strandat 0.424 kb on - strandat 0.429 kb on - strandat 0.429 kb on - strandat 0.437 kb on - strandat 0.442 kb on + strandat 0.442 kb on + strandat 0.455 kb on + strandat 0.510 kb on - strandat 0.522 kb on + strandat 0.542 kb on + strandat 0.549 kb on + strandat 0.629 kb on + strandat 0.681 kb on - strandat 0.683 kb on + strandat 0.723 kb on + strandat 0.798 kb on - strandat 0.923 kb on - strandat 0.951 kb on - strandat 1.005 kb on + strandat 1.078 kb on - strandat 1.078 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrite 20 mM
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356 + -2.5
356 + -0.4
411 + +0.1
416 + -0.1
419 - -0.6
421 + -1.0
421 + -0.6
424 - -0.6
424 - -0.6
429 - -1.7
429 - -0.1
437 - -1.7
442 + +0.8
442 + -0.8
455 + -1.1
510 - +0.5
522 + -0.7
542 + -0.8
549 + -1.2
629 + -0.2
681 - -0.8
683 + -0.6
723 + +0.8
798 - -1.4
923 - +0.7
951 - +1.6
1,005 + -1.6
1,078 - -2.5
1,078 - -0.4

Or see this region's nucleotide sequence