Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1770

Experiment: m.b. nitrite 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1768 and B158DRAFT_1769 are separated by 173 nucleotidesB158DRAFT_1769 and B158DRAFT_1770 overlap by 4 nucleotidesB158DRAFT_1770 and B158DRAFT_1771 are separated by 609 nucleotides B158DRAFT_1768: B158DRAFT_1768 - poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA, at 1,848,584 to 1,851,112 _1768 B158DRAFT_1769: B158DRAFT_1769 - haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E, at 1,851,286 to 1,851,924 _1769 B158DRAFT_1770: B158DRAFT_1770 - ribosomal large subunit pseudouridine synthase C (EC 5.4.99.24), at 1,851,921 to 1,852,871 _1770 B158DRAFT_1771: B158DRAFT_1771 - ribonuclease, Rne/Rng family, at 1,853,481 to 1,856,294 _1771 Position (kb) 1851 1852 1853Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 1851.088 kb on + strandat 1851.204 kb on - strandat 1851.283 kb on + strandat 1851.283 kb on + strandat 1851.291 kb on - strandat 1851.320 kb on + strandat 1851.320 kb on + strandat 1851.327 kb on + strandat 1851.327 kb on + strandat 1851.328 kb on - strandat 1851.432 kb on + strand, within B158DRAFT_1769at 1851.444 kb on + strand, within B158DRAFT_1769at 1851.449 kb on + strand, within B158DRAFT_1769at 1851.449 kb on + strand, within B158DRAFT_1769at 1851.449 kb on + strand, within B158DRAFT_1769at 1851.449 kb on + strand, within B158DRAFT_1769at 1851.455 kb on + strand, within B158DRAFT_1769at 1851.455 kb on + strand, within B158DRAFT_1769at 1851.457 kb on - strand, within B158DRAFT_1769at 1851.457 kb on - strand, within B158DRAFT_1769at 1851.457 kb on - strand, within B158DRAFT_1769at 1851.457 kb on - strand, within B158DRAFT_1769at 1851.457 kb on - strand, within B158DRAFT_1769at 1851.497 kb on + strand, within B158DRAFT_1769at 1851.497 kb on + strand, within B158DRAFT_1769at 1851.497 kb on + strand, within B158DRAFT_1769at 1851.497 kb on + strand, within B158DRAFT_1769at 1851.497 kb on + strand, within B158DRAFT_1769at 1851.497 kb on + strand, within B158DRAFT_1769at 1851.497 kb on + strand, within B158DRAFT_1769at 1851.497 kb on + strand, within B158DRAFT_1769at 1851.497 kb on + strand, within B158DRAFT_1769at 1851.497 kb on + strand, within B158DRAFT_1769at 1851.497 kb on + strand, within B158DRAFT_1769at 1851.497 kb on + strand, within B158DRAFT_1769at 1851.497 kb on + strand, within B158DRAFT_1769at 1851.497 kb on + strand, within B158DRAFT_1769at 1851.497 kb on + strand, within B158DRAFT_1769at 1851.497 kb on + strand, within B158DRAFT_1769at 1851.497 kb on + strand, within B158DRAFT_1769at 1851.497 kb on + strand, within B158DRAFT_1769at 1851.497 kb on + strand, within B158DRAFT_1769at 1851.497 kb on + strand, within B158DRAFT_1769at 1851.497 kb on + strand, within B158DRAFT_1769at 1851.497 kb on + strand, within B158DRAFT_1769at 1851.497 kb on + strand, within B158DRAFT_1769at 1851.497 kb on + strand, within B158DRAFT_1769at 1851.497 kb on + strand, within B158DRAFT_1769at 1851.497 kb on + strand, within B158DRAFT_1769at 1851.497 kb on + strand, within B158DRAFT_1769at 1851.497 kb on + strand, within B158DRAFT_1769at 1851.497 kb on + strand, within B158DRAFT_1769at 1851.497 kb on + strand, within B158DRAFT_1769at 1851.497 kb on + strand, within B158DRAFT_1769at 1851.497 kb on + strand, within B158DRAFT_1769at 1851.497 kb on + strand, within B158DRAFT_1769at 1851.497 kb on + strand, within B158DRAFT_1769at 1851.497 kb on + strand, within B158DRAFT_1769at 1851.497 kb on + strand, within B158DRAFT_1769at 1851.497 kb on + strand, within B158DRAFT_1769at 1851.497 kb on + strand, within B158DRAFT_1769at 1851.497 kb on + strand, within B158DRAFT_1769at 1851.497 kb on + strand, within B158DRAFT_1769at 1851.505 kb on - strand, within B158DRAFT_1769at 1851.505 kb on - strand, within B158DRAFT_1769at 1851.505 kb on - strand, within B158DRAFT_1769at 1851.505 kb on - strand, within B158DRAFT_1769at 1851.505 kb on - strand, within B158DRAFT_1769at 1851.505 kb on - strand, within B158DRAFT_1769at 1851.505 kb on - strand, within B158DRAFT_1769at 1851.505 kb on - strand, within B158DRAFT_1769at 1851.505 kb on - strand, within B158DRAFT_1769at 1851.505 kb on - strand, within B158DRAFT_1769at 1851.505 kb on - strand, within B158DRAFT_1769at 1851.505 kb on - strand, within B158DRAFT_1769at 1851.505 kb on - strand, within B158DRAFT_1769at 1851.505 kb on - strand, within B158DRAFT_1769at 1851.505 kb on - strand, within B158DRAFT_1769at 1851.505 kb on - strand, within B158DRAFT_1769at 1851.505 kb on - strand, within B158DRAFT_1769at 1851.505 kb on - strand, within B158DRAFT_1769at 1851.505 kb on - strand, within B158DRAFT_1769at 1851.505 kb on - strand, within B158DRAFT_1769at 1851.505 kb on - strand, within B158DRAFT_1769at 1851.505 kb on - strand, within B158DRAFT_1769at 1851.505 kb on - strand, within B158DRAFT_1769at 1851.505 kb on - strand, within B158DRAFT_1769at 1851.505 kb on - strand, within B158DRAFT_1769at 1851.505 kb on - strand, within B158DRAFT_1769at 1851.505 kb on - strand, within B158DRAFT_1769at 1851.505 kb on - strand, within B158DRAFT_1769at 1851.505 kb on - strand, within B158DRAFT_1769at 1851.505 kb on - strand, within B158DRAFT_1769at 1851.505 kb on - strand, within B158DRAFT_1769at 1851.505 kb on - strand, within B158DRAFT_1769at 1851.505 kb on - strand, within B158DRAFT_1769at 1851.505 kb on - strand, within B158DRAFT_1769at 1851.505 kb on - strand, within B158DRAFT_1769at 1851.505 kb on - strand, within B158DRAFT_1769at 1851.505 kb on - strand, within B158DRAFT_1769at 1851.505 kb on - strand, within B158DRAFT_1769at 1851.544 kb on + strand, within B158DRAFT_1769at 1851.552 kb on - strand, within B158DRAFT_1769at 1851.552 kb on - strand, within B158DRAFT_1769at 1851.552 kb on - strand, within B158DRAFT_1769at 1851.552 kb on - strand, within B158DRAFT_1769at 1851.557 kb on - strand, within B158DRAFT_1769at 1851.557 kb on - strand, within B158DRAFT_1769at 1851.571 kb on + strand, within B158DRAFT_1769at 1851.578 kb on - strand, within B158DRAFT_1769at 1851.581 kb on + strand, within B158DRAFT_1769at 1851.581 kb on + strand, within B158DRAFT_1769at 1851.589 kb on - strand, within B158DRAFT_1769at 1851.633 kb on + strand, within B158DRAFT_1769at 1851.641 kb on - strand, within B158DRAFT_1769at 1851.641 kb on - strand, within B158DRAFT_1769at 1851.641 kb on - strand, within B158DRAFT_1769at 1851.641 kb on - strand, within B158DRAFT_1769at 1851.674 kb on - strand, within B158DRAFT_1769at 1851.705 kb on + strand, within B158DRAFT_1769at 1851.768 kb on + strand, within B158DRAFT_1769at 1851.776 kb on - strand, within B158DRAFT_1769at 1851.871 kb on - strandat 1851.879 kb on - strandat 1851.879 kb on - strandat 1851.879 kb on - strandat 1851.912 kb on + strandat 1851.928 kb on + strandat 1851.998 kb on - strandat 1852.000 kb on - strandat 1852.011 kb on - strandat 1852.025 kb on - strand, within B158DRAFT_1770at 1852.140 kb on + strand, within B158DRAFT_1770at 1852.140 kb on + strand, within B158DRAFT_1770at 1852.140 kb on + strand, within B158DRAFT_1770at 1852.148 kb on - strand, within B158DRAFT_1770at 1852.171 kb on + strand, within B158DRAFT_1770at 1852.171 kb on + strand, within B158DRAFT_1770at 1852.171 kb on + strand, within B158DRAFT_1770at 1852.171 kb on + strand, within B158DRAFT_1770at 1852.171 kb on + strand, within B158DRAFT_1770at 1852.171 kb on + strand, within B158DRAFT_1770at 1852.171 kb on + strand, within B158DRAFT_1770at 1852.179 kb on - strand, within B158DRAFT_1770at 1852.179 kb on - strand, within B158DRAFT_1770at 1852.179 kb on - strand, within B158DRAFT_1770at 1852.179 kb on - strand, within B158DRAFT_1770at 1852.219 kb on + strand, within B158DRAFT_1770at 1852.228 kb on + strand, within B158DRAFT_1770at 1852.236 kb on + strand, within B158DRAFT_1770at 1852.247 kb on + strand, within B158DRAFT_1770at 1852.269 kb on + strand, within B158DRAFT_1770at 1852.335 kb on - strand, within B158DRAFT_1770at 1852.339 kb on + strand, within B158DRAFT_1770at 1852.342 kb on + strand, within B158DRAFT_1770at 1852.433 kb on - strand, within B158DRAFT_1770at 1852.505 kb on + strand, within B158DRAFT_1770at 1852.513 kb on - strand, within B158DRAFT_1770at 1852.513 kb on - strand, within B158DRAFT_1770at 1852.513 kb on - strand, within B158DRAFT_1770at 1852.543 kb on - strand, within B158DRAFT_1770at 1852.545 kb on - strand, within B158DRAFT_1770at 1852.612 kb on + strand, within B158DRAFT_1770at 1852.627 kb on - strand, within B158DRAFT_1770at 1852.700 kb on - strand, within B158DRAFT_1770at 1852.728 kb on + strand, within B158DRAFT_1770at 1852.728 kb on + strand, within B158DRAFT_1770at 1852.736 kb on - strand, within B158DRAFT_1770at 1852.736 kb on - strand, within B158DRAFT_1770at 1852.806 kb on + strandat 1852.814 kb on - strandat 1852.814 kb on - strandat 1852.881 kb on + strandat 1852.901 kb on + strandat 1852.947 kb on + strandat 1853.110 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrite 20 mM
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1,851,088 + +1.2
1,851,204 - -1.8
1,851,283 + +2.2
1,851,283 + -1.4
1,851,291 - -2.6
1,851,320 + +0.1
1,851,320 + +0.4
1,851,327 + -1.1
1,851,327 + -1.4
1,851,328 - +1.3
1,851,432 + B158DRAFT_1769 0.23 -1.7
1,851,444 + B158DRAFT_1769 0.25 -0.5
1,851,449 + B158DRAFT_1769 0.26 -0.2
1,851,449 + B158DRAFT_1769 0.26 +1.0
1,851,449 + B158DRAFT_1769 0.26 -0.6
1,851,449 + B158DRAFT_1769 0.26 -0.4
1,851,455 + B158DRAFT_1769 0.26 -0.5
1,851,455 + B158DRAFT_1769 0.26 -1.7
1,851,457 - B158DRAFT_1769 0.27 +0.5
1,851,457 - B158DRAFT_1769 0.27 -0.8
1,851,457 - B158DRAFT_1769 0.27 -0.0
1,851,457 - B158DRAFT_1769 0.27 -0.2
1,851,457 - B158DRAFT_1769 0.27 -1.6
1,851,497 + B158DRAFT_1769 0.33 -0.5
1,851,497 + B158DRAFT_1769 0.33 -2.3
1,851,497 + B158DRAFT_1769 0.33 -1.5
1,851,497 + B158DRAFT_1769 0.33 -1.6
1,851,497 + B158DRAFT_1769 0.33 -0.5
1,851,497 + B158DRAFT_1769 0.33 -0.1
1,851,497 + B158DRAFT_1769 0.33 +0.2
1,851,497 + B158DRAFT_1769 0.33 +0.3
1,851,497 + B158DRAFT_1769 0.33 -1.0
1,851,497 + B158DRAFT_1769 0.33 -2.5
1,851,497 + B158DRAFT_1769 0.33 +0.2
1,851,497 + B158DRAFT_1769 0.33 -0.8
1,851,497 + B158DRAFT_1769 0.33 -0.4
1,851,497 + B158DRAFT_1769 0.33 +2.2
1,851,497 + B158DRAFT_1769 0.33 -1.4
1,851,497 + B158DRAFT_1769 0.33 -0.3
1,851,497 + B158DRAFT_1769 0.33 +0.3
1,851,497 + B158DRAFT_1769 0.33 -1.8
1,851,497 + B158DRAFT_1769 0.33 -0.1
1,851,497 + B158DRAFT_1769 0.33 +1.0
1,851,497 + B158DRAFT_1769 0.33 -0.1
1,851,497 + B158DRAFT_1769 0.33 +0.3
1,851,497 + B158DRAFT_1769 0.33 -0.8
1,851,497 + B158DRAFT_1769 0.33 -0.3
1,851,497 + B158DRAFT_1769 0.33 -0.6
1,851,497 + B158DRAFT_1769 0.33 -1.2
1,851,497 + B158DRAFT_1769 0.33 -0.7
1,851,497 + B158DRAFT_1769 0.33 -1.4
1,851,497 + B158DRAFT_1769 0.33 +0.4
1,851,497 + B158DRAFT_1769 0.33 -0.9
1,851,497 + B158DRAFT_1769 0.33 +0.5
1,851,497 + B158DRAFT_1769 0.33 -0.9
1,851,497 + B158DRAFT_1769 0.33 -0.0
1,851,497 + B158DRAFT_1769 0.33 +0.7
1,851,497 + B158DRAFT_1769 0.33 -0.3
1,851,497 + B158DRAFT_1769 0.33 -0.4
1,851,497 + B158DRAFT_1769 0.33 -1.1
1,851,497 + B158DRAFT_1769 0.33 -2.0
1,851,497 + B158DRAFT_1769 0.33 -2.2
1,851,497 + B158DRAFT_1769 0.33 -1.7
1,851,505 - B158DRAFT_1769 0.34 +1.1
1,851,505 - B158DRAFT_1769 0.34 -0.7
1,851,505 - B158DRAFT_1769 0.34 -0.5
1,851,505 - B158DRAFT_1769 0.34 -0.9
1,851,505 - B158DRAFT_1769 0.34 -0.4
1,851,505 - B158DRAFT_1769 0.34 -0.3
1,851,505 - B158DRAFT_1769 0.34 -1.0
1,851,505 - B158DRAFT_1769 0.34 +0.2
1,851,505 - B158DRAFT_1769 0.34 +2.4
1,851,505 - B158DRAFT_1769 0.34 -0.6
1,851,505 - B158DRAFT_1769 0.34 +0.8
1,851,505 - B158DRAFT_1769 0.34 -0.6
1,851,505 - B158DRAFT_1769 0.34 -1.3
1,851,505 - B158DRAFT_1769 0.34 +0.4
1,851,505 - B158DRAFT_1769 0.34 +0.4
1,851,505 - B158DRAFT_1769 0.34 -0.4
1,851,505 - B158DRAFT_1769 0.34 -0.6
1,851,505 - B158DRAFT_1769 0.34 -0.5
1,851,505 - B158DRAFT_1769 0.34 -1.3
1,851,505 - B158DRAFT_1769 0.34 +0.6
1,851,505 - B158DRAFT_1769 0.34 +0.9
1,851,505 - B158DRAFT_1769 0.34 +0.9
1,851,505 - B158DRAFT_1769 0.34 -0.3
1,851,505 - B158DRAFT_1769 0.34 -0.5
1,851,505 - B158DRAFT_1769 0.34 -0.7
1,851,505 - B158DRAFT_1769 0.34 -1.5
1,851,505 - B158DRAFT_1769 0.34 +3.3
1,851,505 - B158DRAFT_1769 0.34 +0.1
1,851,505 - B158DRAFT_1769 0.34 -0.6
1,851,505 - B158DRAFT_1769 0.34 -1.1
1,851,505 - B158DRAFT_1769 0.34 -0.3
1,851,505 - B158DRAFT_1769 0.34 +0.0
1,851,505 - B158DRAFT_1769 0.34 -0.4
1,851,505 - B158DRAFT_1769 0.34 +0.8
1,851,505 - B158DRAFT_1769 0.34 -1.3
1,851,505 - B158DRAFT_1769 0.34 +1.1
1,851,505 - B158DRAFT_1769 0.34 +0.6
1,851,505 - B158DRAFT_1769 0.34 -0.8
1,851,544 + B158DRAFT_1769 0.40 -0.0
1,851,552 - B158DRAFT_1769 0.42 +1.7
1,851,552 - B158DRAFT_1769 0.42 -0.4
1,851,552 - B158DRAFT_1769 0.42 -0.2
1,851,552 - B158DRAFT_1769 0.42 -1.2
1,851,557 - B158DRAFT_1769 0.42 -0.4
1,851,557 - B158DRAFT_1769 0.42 -0.1
1,851,571 + B158DRAFT_1769 0.45 -0.5
1,851,578 - B158DRAFT_1769 0.46 +1.2
1,851,581 + B158DRAFT_1769 0.46 -0.1
1,851,581 + B158DRAFT_1769 0.46 -0.1
1,851,589 - B158DRAFT_1769 0.47 -2.0
1,851,633 + B158DRAFT_1769 0.54 -0.8
1,851,641 - B158DRAFT_1769 0.56 -0.3
1,851,641 - B158DRAFT_1769 0.56 -0.0
1,851,641 - B158DRAFT_1769 0.56 +0.7
1,851,641 - B158DRAFT_1769 0.56 -0.2
1,851,674 - B158DRAFT_1769 0.61 +0.5
1,851,705 + B158DRAFT_1769 0.66 -1.2
1,851,768 + B158DRAFT_1769 0.75 +0.0
1,851,776 - B158DRAFT_1769 0.77 -1.0
1,851,871 - -1.4
1,851,879 - +0.3
1,851,879 - -0.9
1,851,879 - -0.1
1,851,912 + +0.2
1,851,928 + +0.3
1,851,998 - -0.6
1,852,000 - +0.4
1,852,011 - -0.6
1,852,025 - B158DRAFT_1770 0.11 +0.3
1,852,140 + B158DRAFT_1770 0.23 -1.3
1,852,140 + B158DRAFT_1770 0.23 -2.5
1,852,140 + B158DRAFT_1770 0.23 -1.8
1,852,148 - B158DRAFT_1770 0.24 -0.9
1,852,171 + B158DRAFT_1770 0.26 +0.2
1,852,171 + B158DRAFT_1770 0.26 +1.0
1,852,171 + B158DRAFT_1770 0.26 -0.8
1,852,171 + B158DRAFT_1770 0.26 -0.4
1,852,171 + B158DRAFT_1770 0.26 -1.3
1,852,171 + B158DRAFT_1770 0.26 +1.0
1,852,171 + B158DRAFT_1770 0.26 +0.3
1,852,179 - B158DRAFT_1770 0.27 +1.5
1,852,179 - B158DRAFT_1770 0.27 -0.1
1,852,179 - B158DRAFT_1770 0.27 +1.4
1,852,179 - B158DRAFT_1770 0.27 -1.2
1,852,219 + B158DRAFT_1770 0.31 +1.0
1,852,228 + B158DRAFT_1770 0.32 +1.1
1,852,236 + B158DRAFT_1770 0.33 +3.0
1,852,247 + B158DRAFT_1770 0.34 -0.9
1,852,269 + B158DRAFT_1770 0.37 +1.0
1,852,335 - B158DRAFT_1770 0.44 -0.3
1,852,339 + B158DRAFT_1770 0.44 -0.4
1,852,342 + B158DRAFT_1770 0.44 -2.1
1,852,433 - B158DRAFT_1770 0.54 +0.7
1,852,505 + B158DRAFT_1770 0.61 -2.6
1,852,513 - B158DRAFT_1770 0.62 +1.1
1,852,513 - B158DRAFT_1770 0.62 -0.5
1,852,513 - B158DRAFT_1770 0.62 +0.6
1,852,543 - B158DRAFT_1770 0.65 -1.8
1,852,545 - B158DRAFT_1770 0.66 -0.2
1,852,612 + B158DRAFT_1770 0.73 -1.1
1,852,627 - B158DRAFT_1770 0.74 +1.4
1,852,700 - B158DRAFT_1770 0.82 -2.5
1,852,728 + B158DRAFT_1770 0.85 -2.4
1,852,728 + B158DRAFT_1770 0.85 +0.2
1,852,736 - B158DRAFT_1770 0.86 +1.6
1,852,736 - B158DRAFT_1770 0.86 -1.3
1,852,806 + -0.5
1,852,814 - +0.8
1,852,814 - -1.5
1,852,881 + -1.6
1,852,901 + +0.0
1,852,947 + +1.8
1,853,110 + +5.4

Or see this region's nucleotide sequence