Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1736

Experiment: m.b. nitrite 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1735 and B158DRAFT_1736 are separated by 120 nucleotidesB158DRAFT_1736 and B158DRAFT_1737 are separated by 0 nucleotidesB158DRAFT_1737 and B158DRAFT_1738 overlap by 4 nucleotides B158DRAFT_1735: B158DRAFT_1735 - Subtilisin-like serine proteases, at 1,811,742 to 1,814,204 _1735 B158DRAFT_1736: B158DRAFT_1736 - hypothetical protein, at 1,814,325 to 1,814,726 _1736 B158DRAFT_1737: B158DRAFT_1737 - two component transcriptional regulator, LuxR family, at 1,814,727 to 1,815,365 _1737 B158DRAFT_1738: B158DRAFT_1738 - Histidine kinase/Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase, at 1,815,362 to 1,816,105 _1738 Position (kb) 1814 1815Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1813.329 kb on + strand, within B158DRAFT_1735at 1813.374 kb on + strand, within B158DRAFT_1735at 1813.378 kb on + strand, within B158DRAFT_1735at 1813.417 kb on + strand, within B158DRAFT_1735at 1813.433 kb on - strand, within B158DRAFT_1735at 1813.462 kb on - strand, within B158DRAFT_1735at 1813.473 kb on + strand, within B158DRAFT_1735at 1813.514 kb on + strand, within B158DRAFT_1735at 1813.526 kb on + strand, within B158DRAFT_1735at 1813.526 kb on + strand, within B158DRAFT_1735at 1813.526 kb on + strand, within B158DRAFT_1735at 1813.526 kb on + strand, within B158DRAFT_1735at 1813.526 kb on + strand, within B158DRAFT_1735at 1813.526 kb on + strand, within B158DRAFT_1735at 1813.527 kb on + strand, within B158DRAFT_1735at 1813.527 kb on + strand, within B158DRAFT_1735at 1813.528 kb on + strand, within B158DRAFT_1735at 1813.528 kb on + strand, within B158DRAFT_1735at 1813.534 kb on - strand, within B158DRAFT_1735at 1813.534 kb on - strand, within B158DRAFT_1735at 1813.534 kb on - strand, within B158DRAFT_1735at 1813.534 kb on - strand, within B158DRAFT_1735at 1813.534 kb on - strand, within B158DRAFT_1735at 1813.534 kb on - strand, within B158DRAFT_1735at 1813.535 kb on - strand, within B158DRAFT_1735at 1813.538 kb on + strand, within B158DRAFT_1735at 1813.542 kb on - strand, within B158DRAFT_1735at 1813.553 kb on + strand, within B158DRAFT_1735at 1813.595 kb on - strand, within B158DRAFT_1735at 1813.615 kb on + strand, within B158DRAFT_1735at 1813.647 kb on - strand, within B158DRAFT_1735at 1813.647 kb on - strand, within B158DRAFT_1735at 1813.739 kb on + strand, within B158DRAFT_1735at 1813.777 kb on + strand, within B158DRAFT_1735at 1813.831 kb on + strand, within B158DRAFT_1735at 1813.833 kb on + strand, within B158DRAFT_1735at 1813.841 kb on - strand, within B158DRAFT_1735at 1813.846 kb on - strand, within B158DRAFT_1735at 1813.878 kb on + strand, within B158DRAFT_1735at 1813.878 kb on + strand, within B158DRAFT_1735at 1813.878 kb on + strand, within B158DRAFT_1735at 1813.886 kb on - strand, within B158DRAFT_1735at 1813.886 kb on - strand, within B158DRAFT_1735at 1813.886 kb on - strand, within B158DRAFT_1735at 1813.886 kb on - strand, within B158DRAFT_1735at 1813.886 kb on - strand, within B158DRAFT_1735at 1813.962 kb on + strandat 1813.967 kb on + strandat 1813.985 kb on + strandat 1813.993 kb on - strandat 1814.001 kb on + strandat 1814.001 kb on + strandat 1814.036 kb on + strandat 1814.099 kb on + strandat 1814.107 kb on - strandat 1814.107 kb on - strandat 1814.142 kb on + strandat 1814.145 kb on - strandat 1814.229 kb on + strandat 1814.425 kb on + strand, within B158DRAFT_1736at 1814.433 kb on + strand, within B158DRAFT_1736at 1814.497 kb on + strand, within B158DRAFT_1736at 1814.568 kb on + strand, within B158DRAFT_1736at 1814.576 kb on - strand, within B158DRAFT_1736at 1814.658 kb on + strand, within B158DRAFT_1736at 1814.773 kb on + strandat 1814.909 kb on + strand, within B158DRAFT_1737at 1814.995 kb on - strand, within B158DRAFT_1737at 1814.999 kb on - strand, within B158DRAFT_1737at 1815.181 kb on + strand, within B158DRAFT_1737at 1815.204 kb on + strand, within B158DRAFT_1737at 1815.252 kb on + strand, within B158DRAFT_1737at 1815.283 kb on - strand, within B158DRAFT_1737at 1815.312 kb on + strandat 1815.312 kb on + strandat 1815.350 kb on + strandat 1815.384 kb on + strandat 1815.384 kb on + strandat 1815.385 kb on - strandat 1815.392 kb on - strandat 1815.419 kb on + strandat 1815.419 kb on + strandat 1815.427 kb on - strandat 1815.427 kb on - strandat 1815.427 kb on - strandat 1815.427 kb on - strandat 1815.427 kb on - strandat 1815.430 kb on + strandat 1815.430 kb on + strandat 1815.437 kb on - strand, within B158DRAFT_1738at 1815.455 kb on + strand, within B158DRAFT_1738at 1815.490 kb on + strand, within B158DRAFT_1738at 1815.498 kb on - strand, within B158DRAFT_1738at 1815.498 kb on - strand, within B158DRAFT_1738at 1815.498 kb on - strand, within B158DRAFT_1738at 1815.498 kb on - strand, within B158DRAFT_1738at 1815.498 kb on - strand, within B158DRAFT_1738at 1815.516 kb on - strand, within B158DRAFT_1738at 1815.523 kb on + strand, within B158DRAFT_1738at 1815.524 kb on + strand, within B158DRAFT_1738at 1815.537 kb on + strand, within B158DRAFT_1738at 1815.537 kb on + strand, within B158DRAFT_1738at 1815.545 kb on - strand, within B158DRAFT_1738at 1815.545 kb on - strand, within B158DRAFT_1738at 1815.581 kb on - strand, within B158DRAFT_1738at 1815.648 kb on + strand, within B158DRAFT_1738at 1815.703 kb on + strand, within B158DRAFT_1738

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrite 20 mM
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1,813,329 + B158DRAFT_1735 0.64 -1.1
1,813,374 + B158DRAFT_1735 0.66 -0.2
1,813,378 + B158DRAFT_1735 0.66 +0.4
1,813,417 + B158DRAFT_1735 0.68 -0.7
1,813,433 - B158DRAFT_1735 0.69 +0.6
1,813,462 - B158DRAFT_1735 0.70 -1.5
1,813,473 + B158DRAFT_1735 0.70 -1.0
1,813,514 + B158DRAFT_1735 0.72 -1.3
1,813,526 + B158DRAFT_1735 0.72 +2.0
1,813,526 + B158DRAFT_1735 0.72 +1.3
1,813,526 + B158DRAFT_1735 0.72 -0.2
1,813,526 + B158DRAFT_1735 0.72 -0.7
1,813,526 + B158DRAFT_1735 0.72 +1.3
1,813,526 + B158DRAFT_1735 0.72 -0.8
1,813,527 + B158DRAFT_1735 0.72 -1.4
1,813,527 + B158DRAFT_1735 0.72 -0.0
1,813,528 + B158DRAFT_1735 0.73 -0.7
1,813,528 + B158DRAFT_1735 0.73 -1.0
1,813,534 - B158DRAFT_1735 0.73 +0.4
1,813,534 - B158DRAFT_1735 0.73 +2.3
1,813,534 - B158DRAFT_1735 0.73 -0.6
1,813,534 - B158DRAFT_1735 0.73 +0.6
1,813,534 - B158DRAFT_1735 0.73 -1.4
1,813,534 - B158DRAFT_1735 0.73 -1.4
1,813,535 - B158DRAFT_1735 0.73 -0.9
1,813,538 + B158DRAFT_1735 0.73 +0.3
1,813,542 - B158DRAFT_1735 0.73 -0.6
1,813,553 + B158DRAFT_1735 0.74 +0.0
1,813,595 - B158DRAFT_1735 0.75 -0.7
1,813,615 + B158DRAFT_1735 0.76 -1.5
1,813,647 - B158DRAFT_1735 0.77 +1.8
1,813,647 - B158DRAFT_1735 0.77 -2.5
1,813,739 + B158DRAFT_1735 0.81 -1.9
1,813,777 + B158DRAFT_1735 0.83 -0.7
1,813,831 + B158DRAFT_1735 0.85 -0.7
1,813,833 + B158DRAFT_1735 0.85 -1.0
1,813,841 - B158DRAFT_1735 0.85 -1.5
1,813,846 - B158DRAFT_1735 0.85 -0.8
1,813,878 + B158DRAFT_1735 0.87 +0.1
1,813,878 + B158DRAFT_1735 0.87 -0.7
1,813,878 + B158DRAFT_1735 0.87 -1.7
1,813,886 - B158DRAFT_1735 0.87 +0.4
1,813,886 - B158DRAFT_1735 0.87 -1.0
1,813,886 - B158DRAFT_1735 0.87 +1.4
1,813,886 - B158DRAFT_1735 0.87 -1.4
1,813,886 - B158DRAFT_1735 0.87 +1.3
1,813,962 + +0.6
1,813,967 + -0.7
1,813,985 + +0.1
1,813,993 - +1.5
1,814,001 + -1.2
1,814,001 + -1.3
1,814,036 + -0.1
1,814,099 + +0.7
1,814,107 - +0.2
1,814,107 - +0.4
1,814,142 + -1.7
1,814,145 - -1.5
1,814,229 + -2.3
1,814,425 + B158DRAFT_1736 0.25 -2.3
1,814,433 + B158DRAFT_1736 0.27 -0.1
1,814,497 + B158DRAFT_1736 0.43 -0.8
1,814,568 + B158DRAFT_1736 0.60 -1.3
1,814,576 - B158DRAFT_1736 0.62 +0.9
1,814,658 + B158DRAFT_1736 0.83 +0.2
1,814,773 + +1.1
1,814,909 + B158DRAFT_1737 0.28 +0.1
1,814,995 - B158DRAFT_1737 0.42 -1.1
1,814,999 - B158DRAFT_1737 0.43 +0.4
1,815,181 + B158DRAFT_1737 0.71 -0.9
1,815,204 + B158DRAFT_1737 0.75 -1.3
1,815,252 + B158DRAFT_1737 0.82 -1.2
1,815,283 - B158DRAFT_1737 0.87 -3.2
1,815,312 + +0.4
1,815,312 + -1.1
1,815,350 + -0.7
1,815,384 + -1.2
1,815,384 + +0.2
1,815,385 - +0.5
1,815,392 - +0.7
1,815,419 + -0.2
1,815,419 + -2.1
1,815,427 - -0.3
1,815,427 - +0.5
1,815,427 - +0.7
1,815,427 - -0.7
1,815,427 - -2.6
1,815,430 + +0.5
1,815,430 + -0.3
1,815,437 - B158DRAFT_1738 0.10 +0.1
1,815,455 + B158DRAFT_1738 0.12 +0.3
1,815,490 + B158DRAFT_1738 0.17 +0.9
1,815,498 - B158DRAFT_1738 0.18 -0.8
1,815,498 - B158DRAFT_1738 0.18 -0.3
1,815,498 - B158DRAFT_1738 0.18 -0.8
1,815,498 - B158DRAFT_1738 0.18 -2.2
1,815,498 - B158DRAFT_1738 0.18 -1.3
1,815,516 - B158DRAFT_1738 0.21 -0.1
1,815,523 + B158DRAFT_1738 0.22 -0.6
1,815,524 + B158DRAFT_1738 0.22 -2.2
1,815,537 + B158DRAFT_1738 0.24 -0.9
1,815,537 + B158DRAFT_1738 0.24 -0.4
1,815,545 - B158DRAFT_1738 0.25 +0.6
1,815,545 - B158DRAFT_1738 0.25 -0.2
1,815,581 - B158DRAFT_1738 0.29 -0.3
1,815,648 + B158DRAFT_1738 0.38 -0.8
1,815,703 + B158DRAFT_1738 0.46 -1.9

Or see this region's nucleotide sequence