Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1599

Experiment: m.b. nitrite 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1598 and B158DRAFT_1599 are separated by 31 nucleotidesB158DRAFT_1599 and B158DRAFT_1600 overlap by 11 nucleotidesB158DRAFT_1600 and B158DRAFT_1601 overlap by 11 nucleotidesB158DRAFT_1601 and B158DRAFT_1602 are separated by 30 nucleotides B158DRAFT_1598: B158DRAFT_1598 - lipid A export permease/ATP-binding protein MsbA, at 1,658,006 to 1,659,754 _1598 B158DRAFT_1599: B158DRAFT_1599 - lipid-A-disaccharide kinase (EC 2.7.1.130), at 1,659,786 to 1,660,751 _1599 B158DRAFT_1600: B158DRAFT_1600 - Uncharacterized conserved protein, at 1,660,741 to 1,660,926 _1600 B158DRAFT_1601: B158DRAFT_1601 - 3-deoxy-D-manno-octulosonate cytidylyltransferase, at 1,660,916 to 1,661,686 _1601 B158DRAFT_1602: B158DRAFT_1602 - Protein-tyrosine-phosphatase, at 1,661,717 to 1,662,202 _1602 Position (kb) 1659 1660 1661Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1659.732 kb on + strandat 1659.777 kb on + strandat 1659.777 kb on + strandat 1659.777 kb on + strandat 1659.777 kb on + strandat 1659.782 kb on + strandat 1660.724 kb on + strandat 1660.724 kb on + strandat 1661.644 kb on + strandat 1661.670 kb on - strandat 1661.708 kb on + strandat 1661.708 kb on + strandat 1661.708 kb on + strandat 1661.708 kb on + strandat 1661.708 kb on + strandat 1661.708 kb on + strandat 1661.708 kb on + strandat 1661.708 kb on + strandat 1661.708 kb on + strandat 1661.716 kb on - strandat 1661.716 kb on - strandat 1661.716 kb on - strandat 1661.749 kb on + strandat 1661.749 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrite 20 mM
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1,659,732 + +2.7
1,659,777 + +4.3
1,659,777 + -1.0
1,659,777 + -0.2
1,659,777 + +3.3
1,659,782 + -1.5
1,660,724 + -1.0
1,660,724 + +0.2
1,661,644 + -2.2
1,661,670 - +0.7
1,661,708 + +0.5
1,661,708 + +0.5
1,661,708 + -0.9
1,661,708 + -0.1
1,661,708 + -2.0
1,661,708 + +1.2
1,661,708 + -0.4
1,661,708 + -0.6
1,661,708 + -1.0
1,661,716 - -1.3
1,661,716 - -0.6
1,661,716 - -0.8
1,661,749 + -0.6
1,661,749 + -2.2

Or see this region's nucleotide sequence