Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1494

Experiment: m.b. nitrite 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1492 and B158DRAFT_1493 are separated by 238 nucleotidesB158DRAFT_1493 and B158DRAFT_1494 are separated by 220 nucleotidesB158DRAFT_1494 and B158DRAFT_1495 are separated by 59 nucleotidesB158DRAFT_1495 and B158DRAFT_1496 are separated by 55 nucleotides B158DRAFT_1492: B158DRAFT_1492 - FAD/FMN-containing dehydrogenases, at 1,548,880 to 1,550,271 _1492 B158DRAFT_1493: B158DRAFT_1493 - tRNA_Val_TAC, at 1,550,510 to 1,550,585 _1493 B158DRAFT_1494: B158DRAFT_1494 - glutamyl-tRNA synthetase (EC 6.1.1.17), at 1,550,806 to 1,552,224 _1494 B158DRAFT_1495: B158DRAFT_1495 - hypothetical protein, at 1,552,284 to 1,552,865 _1495 B158DRAFT_1496: B158DRAFT_1496 - cyanophycinase, at 1,552,921 to 1,553,739 _1496 Position (kb) 1550 1551 1552 1553Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1549.854 kb on + strand, within B158DRAFT_1492at 1549.854 kb on + strand, within B158DRAFT_1492at 1549.857 kb on - strand, within B158DRAFT_1492at 1549.862 kb on - strand, within B158DRAFT_1492at 1549.862 kb on - strand, within B158DRAFT_1492at 1549.862 kb on - strand, within B158DRAFT_1492at 1549.862 kb on - strand, within B158DRAFT_1492at 1549.862 kb on - strand, within B158DRAFT_1492at 1549.871 kb on + strand, within B158DRAFT_1492at 1549.883 kb on + strand, within B158DRAFT_1492at 1549.883 kb on + strand, within B158DRAFT_1492at 1549.883 kb on + strand, within B158DRAFT_1492at 1549.883 kb on + strand, within B158DRAFT_1492at 1549.883 kb on + strand, within B158DRAFT_1492at 1549.883 kb on + strand, within B158DRAFT_1492at 1549.891 kb on - strand, within B158DRAFT_1492at 1549.891 kb on - strand, within B158DRAFT_1492at 1549.891 kb on - strand, within B158DRAFT_1492at 1549.891 kb on - strand, within B158DRAFT_1492at 1549.891 kb on - strand, within B158DRAFT_1492at 1549.891 kb on - strand, within B158DRAFT_1492at 1549.902 kb on + strand, within B158DRAFT_1492at 1550.041 kb on + strand, within B158DRAFT_1492at 1550.041 kb on + strand, within B158DRAFT_1492at 1550.041 kb on + strand, within B158DRAFT_1492at 1550.041 kb on + strand, within B158DRAFT_1492at 1550.041 kb on + strand, within B158DRAFT_1492at 1550.041 kb on + strand, within B158DRAFT_1492at 1550.049 kb on - strand, within B158DRAFT_1492at 1550.049 kb on - strand, within B158DRAFT_1492at 1550.049 kb on - strand, within B158DRAFT_1492at 1550.070 kb on - strand, within B158DRAFT_1492at 1550.171 kb on + strandat 1550.171 kb on + strandat 1550.179 kb on - strandat 1550.179 kb on - strandat 1550.179 kb on - strandat 1550.179 kb on - strandat 1550.222 kb on - strandat 1550.325 kb on - strandat 1550.352 kb on + strandat 1550.395 kb on - strandat 1550.534 kb on - strand, within B158DRAFT_1493at 1550.534 kb on - strand, within B158DRAFT_1493at 1550.541 kb on - strand, within B158DRAFT_1493at 1550.554 kb on + strand, within B158DRAFT_1493at 1550.618 kb on + strandat 1550.626 kb on - strandat 1550.635 kb on - strandat 1550.640 kb on + strandat 1550.648 kb on - strandat 1550.688 kb on + strandat 1550.767 kb on - strandat 1552.193 kb on + strandat 1552.206 kb on + strandat 1552.206 kb on + strandat 1552.221 kb on - strandat 1552.221 kb on - strandat 1552.344 kb on - strand, within B158DRAFT_1495at 1552.384 kb on + strand, within B158DRAFT_1495at 1552.406 kb on + strand, within B158DRAFT_1495at 1552.424 kb on - strand, within B158DRAFT_1495at 1552.461 kb on + strand, within B158DRAFT_1495at 1552.461 kb on + strand, within B158DRAFT_1495at 1552.461 kb on + strand, within B158DRAFT_1495at 1552.560 kb on + strand, within B158DRAFT_1495at 1552.568 kb on - strand, within B158DRAFT_1495at 1552.583 kb on - strand, within B158DRAFT_1495at 1552.607 kb on - strand, within B158DRAFT_1495at 1552.623 kb on - strand, within B158DRAFT_1495at 1552.685 kb on + strand, within B158DRAFT_1495at 1552.711 kb on + strand, within B158DRAFT_1495at 1552.774 kb on + strand, within B158DRAFT_1495at 1552.774 kb on + strand, within B158DRAFT_1495at 1552.774 kb on + strand, within B158DRAFT_1495at 1552.774 kb on + strand, within B158DRAFT_1495at 1552.782 kb on - strand, within B158DRAFT_1495at 1552.784 kb on + strand, within B158DRAFT_1495at 1552.792 kb on - strand, within B158DRAFT_1495at 1552.792 kb on - strand, within B158DRAFT_1495at 1552.799 kb on + strand, within B158DRAFT_1495at 1552.806 kb on - strand, within B158DRAFT_1495at 1552.829 kb on + strandat 1552.837 kb on - strandat 1552.924 kb on + strandat 1552.932 kb on - strandat 1552.932 kb on - strandat 1552.953 kb on + strandat 1552.958 kb on + strandat 1552.961 kb on - strandat 1552.966 kb on - strandat 1552.966 kb on - strandat 1552.966 kb on - strandat 1552.981 kb on - strandat 1552.987 kb on + strandat 1553.019 kb on - strand, within B158DRAFT_1496at 1553.028 kb on + strand, within B158DRAFT_1496at 1553.037 kb on + strand, within B158DRAFT_1496at 1553.045 kb on - strand, within B158DRAFT_1496at 1553.045 kb on - strand, within B158DRAFT_1496at 1553.059 kb on + strand, within B158DRAFT_1496at 1553.153 kb on - strand, within B158DRAFT_1496at 1553.181 kb on - strand, within B158DRAFT_1496at 1553.191 kb on - strand, within B158DRAFT_1496at 1553.191 kb on - strand, within B158DRAFT_1496at 1553.203 kb on + strand, within B158DRAFT_1496at 1553.211 kb on - strand, within B158DRAFT_1496

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrite 20 mM
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1,549,854 + B158DRAFT_1492 0.70 +0.6
1,549,854 + B158DRAFT_1492 0.70 +1.1
1,549,857 - B158DRAFT_1492 0.70 +1.1
1,549,862 - B158DRAFT_1492 0.71 +2.3
1,549,862 - B158DRAFT_1492 0.71 +1.0
1,549,862 - B158DRAFT_1492 0.71 +1.3
1,549,862 - B158DRAFT_1492 0.71 +0.1
1,549,862 - B158DRAFT_1492 0.71 +0.6
1,549,871 + B158DRAFT_1492 0.71 +2.3
1,549,883 + B158DRAFT_1492 0.72 +1.1
1,549,883 + B158DRAFT_1492 0.72 +0.6
1,549,883 + B158DRAFT_1492 0.72 +2.3
1,549,883 + B158DRAFT_1492 0.72 +1.1
1,549,883 + B158DRAFT_1492 0.72 +0.9
1,549,883 + B158DRAFT_1492 0.72 +3.3
1,549,891 - B158DRAFT_1492 0.73 +1.3
1,549,891 - B158DRAFT_1492 0.73 +0.5
1,549,891 - B158DRAFT_1492 0.73 -0.4
1,549,891 - B158DRAFT_1492 0.73 -0.3
1,549,891 - B158DRAFT_1492 0.73 -0.2
1,549,891 - B158DRAFT_1492 0.73 -2.0
1,549,902 + B158DRAFT_1492 0.73 -0.1
1,550,041 + B158DRAFT_1492 0.83 +0.6
1,550,041 + B158DRAFT_1492 0.83 +1.1
1,550,041 + B158DRAFT_1492 0.83 +1.7
1,550,041 + B158DRAFT_1492 0.83 +2.7
1,550,041 + B158DRAFT_1492 0.83 +0.5
1,550,041 + B158DRAFT_1492 0.83 +2.0
1,550,049 - B158DRAFT_1492 0.84 +0.2
1,550,049 - B158DRAFT_1492 0.84 -1.4
1,550,049 - B158DRAFT_1492 0.84 -1.1
1,550,070 - B158DRAFT_1492 0.85 +1.0
1,550,171 + +1.0
1,550,171 + +1.3
1,550,179 - -0.0
1,550,179 - -1.8
1,550,179 - -0.3
1,550,179 - -1.3
1,550,222 - +1.1
1,550,325 - -0.6
1,550,352 + -0.3
1,550,395 - -2.1
1,550,534 - B158DRAFT_1493 0.32 -0.3
1,550,534 - B158DRAFT_1493 0.32 -2.1
1,550,541 - B158DRAFT_1493 0.41 -0.6
1,550,554 + B158DRAFT_1493 0.58 +0.4
1,550,618 + -0.4
1,550,626 - -0.1
1,550,635 - -2.1
1,550,640 + -0.5
1,550,648 - -0.1
1,550,688 + +0.2
1,550,767 - +0.1
1,552,193 + +0.7
1,552,206 + +0.1
1,552,206 + -1.1
1,552,221 - +1.0
1,552,221 - +0.7
1,552,344 - B158DRAFT_1495 0.10 -0.7
1,552,384 + B158DRAFT_1495 0.17 -0.4
1,552,406 + B158DRAFT_1495 0.21 +0.2
1,552,424 - B158DRAFT_1495 0.24 -1.2
1,552,461 + B158DRAFT_1495 0.30 +1.1
1,552,461 + B158DRAFT_1495 0.30 +0.0
1,552,461 + B158DRAFT_1495 0.30 -0.8
1,552,560 + B158DRAFT_1495 0.47 +0.2
1,552,568 - B158DRAFT_1495 0.49 -0.9
1,552,583 - B158DRAFT_1495 0.51 -0.5
1,552,607 - B158DRAFT_1495 0.55 +0.1
1,552,623 - B158DRAFT_1495 0.58 -1.7
1,552,685 + B158DRAFT_1495 0.69 +0.2
1,552,711 + B158DRAFT_1495 0.73 +1.5
1,552,774 + B158DRAFT_1495 0.84 +0.1
1,552,774 + B158DRAFT_1495 0.84 -2.0
1,552,774 + B158DRAFT_1495 0.84 -2.0
1,552,774 + B158DRAFT_1495 0.84 -2.0
1,552,782 - B158DRAFT_1495 0.86 +0.1
1,552,784 + B158DRAFT_1495 0.86 -0.3
1,552,792 - B158DRAFT_1495 0.87 -0.7
1,552,792 - B158DRAFT_1495 0.87 +0.5
1,552,799 + B158DRAFT_1495 0.88 -0.4
1,552,806 - B158DRAFT_1495 0.90 -1.4
1,552,829 + -1.6
1,552,837 - -0.5
1,552,924 + -1.2
1,552,932 - -0.3
1,552,932 - +0.0
1,552,953 + -1.9
1,552,958 + -0.6
1,552,961 - -0.0
1,552,966 - -2.0
1,552,966 - -0.4
1,552,966 - -1.8
1,552,981 - -1.3
1,552,987 + -1.1
1,553,019 - B158DRAFT_1496 0.12 -0.5
1,553,028 + B158DRAFT_1496 0.13 -0.4
1,553,037 + B158DRAFT_1496 0.14 -1.7
1,553,045 - B158DRAFT_1496 0.15 -0.8
1,553,045 - B158DRAFT_1496 0.15 -0.7
1,553,059 + B158DRAFT_1496 0.17 -1.3
1,553,153 - B158DRAFT_1496 0.28 +0.0
1,553,181 - B158DRAFT_1496 0.32 +0.2
1,553,191 - B158DRAFT_1496 0.33 -1.4
1,553,191 - B158DRAFT_1496 0.33 +0.1
1,553,203 + B158DRAFT_1496 0.34 +0.8
1,553,211 - B158DRAFT_1496 0.35 +0.3

Or see this region's nucleotide sequence