Experiment: m.b. nitrite 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_1492 and B158DRAFT_1493 are separated by 238 nucleotides B158DRAFT_1493 and B158DRAFT_1494 are separated by 220 nucleotides B158DRAFT_1494 and B158DRAFT_1495 are separated by 59 nucleotides B158DRAFT_1495 and B158DRAFT_1496 are separated by 55 nucleotides
B158DRAFT_1492: B158DRAFT_1492 - FAD/FMN-containing dehydrogenases, at 1,548,880 to 1,550,271
_1492
B158DRAFT_1493: B158DRAFT_1493 - tRNA_Val_TAC, at 1,550,510 to 1,550,585
_1493
B158DRAFT_1494: B158DRAFT_1494 - glutamyl-tRNA synthetase (EC 6.1.1.17), at 1,550,806 to 1,552,224
_1494
B158DRAFT_1495: B158DRAFT_1495 - hypothetical protein, at 1,552,284 to 1,552,865
_1495
B158DRAFT_1496: B158DRAFT_1496 - cyanophycinase, at 1,552,921 to 1,553,739
_1496
Position (kb)
1550
1551
1552
1553 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1549.854 kb on + strand, within B158DRAFT_1492 at 1549.854 kb on + strand, within B158DRAFT_1492 at 1549.857 kb on - strand, within B158DRAFT_1492 at 1549.862 kb on - strand, within B158DRAFT_1492 at 1549.862 kb on - strand, within B158DRAFT_1492 at 1549.862 kb on - strand, within B158DRAFT_1492 at 1549.862 kb on - strand, within B158DRAFT_1492 at 1549.862 kb on - strand, within B158DRAFT_1492 at 1549.871 kb on + strand, within B158DRAFT_1492 at 1549.883 kb on + strand, within B158DRAFT_1492 at 1549.883 kb on + strand, within B158DRAFT_1492 at 1549.883 kb on + strand, within B158DRAFT_1492 at 1549.883 kb on + strand, within B158DRAFT_1492 at 1549.883 kb on + strand, within B158DRAFT_1492 at 1549.883 kb on + strand, within B158DRAFT_1492 at 1549.891 kb on - strand, within B158DRAFT_1492 at 1549.891 kb on - strand, within B158DRAFT_1492 at 1549.891 kb on - strand, within B158DRAFT_1492 at 1549.891 kb on - strand, within B158DRAFT_1492 at 1549.891 kb on - strand, within B158DRAFT_1492 at 1549.891 kb on - strand, within B158DRAFT_1492 at 1549.902 kb on + strand, within B158DRAFT_1492 at 1550.041 kb on + strand, within B158DRAFT_1492 at 1550.041 kb on + strand, within B158DRAFT_1492 at 1550.041 kb on + strand, within B158DRAFT_1492 at 1550.041 kb on + strand, within B158DRAFT_1492 at 1550.041 kb on + strand, within B158DRAFT_1492 at 1550.041 kb on + strand, within B158DRAFT_1492 at 1550.049 kb on - strand, within B158DRAFT_1492 at 1550.049 kb on - strand, within B158DRAFT_1492 at 1550.049 kb on - strand, within B158DRAFT_1492 at 1550.070 kb on - strand, within B158DRAFT_1492 at 1550.171 kb on + strand at 1550.171 kb on + strand at 1550.179 kb on - strand at 1550.179 kb on - strand at 1550.179 kb on - strand at 1550.179 kb on - strand at 1550.222 kb on - strand at 1550.325 kb on - strand at 1550.352 kb on + strand at 1550.395 kb on - strand at 1550.534 kb on - strand, within B158DRAFT_1493 at 1550.534 kb on - strand, within B158DRAFT_1493 at 1550.541 kb on - strand, within B158DRAFT_1493 at 1550.554 kb on + strand, within B158DRAFT_1493 at 1550.618 kb on + strand at 1550.626 kb on - strand at 1550.635 kb on - strand at 1550.640 kb on + strand at 1550.648 kb on - strand at 1550.688 kb on + strand at 1550.767 kb on - strand at 1552.193 kb on + strand at 1552.206 kb on + strand at 1552.206 kb on + strand at 1552.221 kb on - strand at 1552.221 kb on - strand at 1552.344 kb on - strand, within B158DRAFT_1495 at 1552.384 kb on + strand, within B158DRAFT_1495 at 1552.406 kb on + strand, within B158DRAFT_1495 at 1552.424 kb on - strand, within B158DRAFT_1495 at 1552.461 kb on + strand, within B158DRAFT_1495 at 1552.461 kb on + strand, within B158DRAFT_1495 at 1552.461 kb on + strand, within B158DRAFT_1495 at 1552.560 kb on + strand, within B158DRAFT_1495 at 1552.568 kb on - strand, within B158DRAFT_1495 at 1552.583 kb on - strand, within B158DRAFT_1495 at 1552.607 kb on - strand, within B158DRAFT_1495 at 1552.623 kb on - strand, within B158DRAFT_1495 at 1552.685 kb on + strand, within B158DRAFT_1495 at 1552.711 kb on + strand, within B158DRAFT_1495 at 1552.774 kb on + strand, within B158DRAFT_1495 at 1552.774 kb on + strand, within B158DRAFT_1495 at 1552.774 kb on + strand, within B158DRAFT_1495 at 1552.774 kb on + strand, within B158DRAFT_1495 at 1552.782 kb on - strand, within B158DRAFT_1495 at 1552.784 kb on + strand, within B158DRAFT_1495 at 1552.792 kb on - strand, within B158DRAFT_1495 at 1552.792 kb on - strand, within B158DRAFT_1495 at 1552.799 kb on + strand, within B158DRAFT_1495 at 1552.806 kb on - strand, within B158DRAFT_1495 at 1552.829 kb on + strand at 1552.837 kb on - strand at 1552.924 kb on + strand at 1552.932 kb on - strand at 1552.932 kb on - strand at 1552.953 kb on + strand at 1552.958 kb on + strand at 1552.961 kb on - strand at 1552.966 kb on - strand at 1552.966 kb on - strand at 1552.966 kb on - strand at 1552.981 kb on - strand at 1552.987 kb on + strand at 1553.019 kb on - strand, within B158DRAFT_1496 at 1553.028 kb on + strand, within B158DRAFT_1496 at 1553.037 kb on + strand, within B158DRAFT_1496 at 1553.045 kb on - strand, within B158DRAFT_1496 at 1553.045 kb on - strand, within B158DRAFT_1496 at 1553.059 kb on + strand, within B158DRAFT_1496 at 1553.153 kb on - strand, within B158DRAFT_1496 at 1553.181 kb on - strand, within B158DRAFT_1496 at 1553.191 kb on - strand, within B158DRAFT_1496 at 1553.191 kb on - strand, within B158DRAFT_1496 at 1553.203 kb on + strand, within B158DRAFT_1496 at 1553.211 kb on - strand, within B158DRAFT_1496
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 20 mM remove 1,549,854 + B158DRAFT_1492 0.70 +0.6 1,549,854 + B158DRAFT_1492 0.70 +1.1 1,549,857 - B158DRAFT_1492 0.70 +1.1 1,549,862 - B158DRAFT_1492 0.71 +2.3 1,549,862 - B158DRAFT_1492 0.71 +1.0 1,549,862 - B158DRAFT_1492 0.71 +1.3 1,549,862 - B158DRAFT_1492 0.71 +0.1 1,549,862 - B158DRAFT_1492 0.71 +0.6 1,549,871 + B158DRAFT_1492 0.71 +2.3 1,549,883 + B158DRAFT_1492 0.72 +1.1 1,549,883 + B158DRAFT_1492 0.72 +0.6 1,549,883 + B158DRAFT_1492 0.72 +2.3 1,549,883 + B158DRAFT_1492 0.72 +1.1 1,549,883 + B158DRAFT_1492 0.72 +0.9 1,549,883 + B158DRAFT_1492 0.72 +3.3 1,549,891 - B158DRAFT_1492 0.73 +1.3 1,549,891 - B158DRAFT_1492 0.73 +0.5 1,549,891 - B158DRAFT_1492 0.73 -0.4 1,549,891 - B158DRAFT_1492 0.73 -0.3 1,549,891 - B158DRAFT_1492 0.73 -0.2 1,549,891 - B158DRAFT_1492 0.73 -2.0 1,549,902 + B158DRAFT_1492 0.73 -0.1 1,550,041 + B158DRAFT_1492 0.83 +0.6 1,550,041 + B158DRAFT_1492 0.83 +1.1 1,550,041 + B158DRAFT_1492 0.83 +1.7 1,550,041 + B158DRAFT_1492 0.83 +2.7 1,550,041 + B158DRAFT_1492 0.83 +0.5 1,550,041 + B158DRAFT_1492 0.83 +2.0 1,550,049 - B158DRAFT_1492 0.84 +0.2 1,550,049 - B158DRAFT_1492 0.84 -1.4 1,550,049 - B158DRAFT_1492 0.84 -1.1 1,550,070 - B158DRAFT_1492 0.85 +1.0 1,550,171 + +1.0 1,550,171 + +1.3 1,550,179 - -0.0 1,550,179 - -1.8 1,550,179 - -0.3 1,550,179 - -1.3 1,550,222 - +1.1 1,550,325 - -0.6 1,550,352 + -0.3 1,550,395 - -2.1 1,550,534 - B158DRAFT_1493 0.32 -0.3 1,550,534 - B158DRAFT_1493 0.32 -2.1 1,550,541 - B158DRAFT_1493 0.41 -0.6 1,550,554 + B158DRAFT_1493 0.58 +0.4 1,550,618 + -0.4 1,550,626 - -0.1 1,550,635 - -2.1 1,550,640 + -0.5 1,550,648 - -0.1 1,550,688 + +0.2 1,550,767 - +0.1 1,552,193 + +0.7 1,552,206 + +0.1 1,552,206 + -1.1 1,552,221 - +1.0 1,552,221 - +0.7 1,552,344 - B158DRAFT_1495 0.10 -0.7 1,552,384 + B158DRAFT_1495 0.17 -0.4 1,552,406 + B158DRAFT_1495 0.21 +0.2 1,552,424 - B158DRAFT_1495 0.24 -1.2 1,552,461 + B158DRAFT_1495 0.30 +1.1 1,552,461 + B158DRAFT_1495 0.30 +0.0 1,552,461 + B158DRAFT_1495 0.30 -0.8 1,552,560 + B158DRAFT_1495 0.47 +0.2 1,552,568 - B158DRAFT_1495 0.49 -0.9 1,552,583 - B158DRAFT_1495 0.51 -0.5 1,552,607 - B158DRAFT_1495 0.55 +0.1 1,552,623 - B158DRAFT_1495 0.58 -1.7 1,552,685 + B158DRAFT_1495 0.69 +0.2 1,552,711 + B158DRAFT_1495 0.73 +1.5 1,552,774 + B158DRAFT_1495 0.84 +0.1 1,552,774 + B158DRAFT_1495 0.84 -2.0 1,552,774 + B158DRAFT_1495 0.84 -2.0 1,552,774 + B158DRAFT_1495 0.84 -2.0 1,552,782 - B158DRAFT_1495 0.86 +0.1 1,552,784 + B158DRAFT_1495 0.86 -0.3 1,552,792 - B158DRAFT_1495 0.87 -0.7 1,552,792 - B158DRAFT_1495 0.87 +0.5 1,552,799 + B158DRAFT_1495 0.88 -0.4 1,552,806 - B158DRAFT_1495 0.90 -1.4 1,552,829 + -1.6 1,552,837 - -0.5 1,552,924 + -1.2 1,552,932 - -0.3 1,552,932 - +0.0 1,552,953 + -1.9 1,552,958 + -0.6 1,552,961 - -0.0 1,552,966 - -2.0 1,552,966 - -0.4 1,552,966 - -1.8 1,552,981 - -1.3 1,552,987 + -1.1 1,553,019 - B158DRAFT_1496 0.12 -0.5 1,553,028 + B158DRAFT_1496 0.13 -0.4 1,553,037 + B158DRAFT_1496 0.14 -1.7 1,553,045 - B158DRAFT_1496 0.15 -0.8 1,553,045 - B158DRAFT_1496 0.15 -0.7 1,553,059 + B158DRAFT_1496 0.17 -1.3 1,553,153 - B158DRAFT_1496 0.28 +0.0 1,553,181 - B158DRAFT_1496 0.32 +0.2 1,553,191 - B158DRAFT_1496 0.33 -1.4 1,553,191 - B158DRAFT_1496 0.33 +0.1 1,553,203 + B158DRAFT_1496 0.34 +0.8 1,553,211 - B158DRAFT_1496 0.35 +0.3
Or see this region's nucleotide sequence