Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1446

Experiment: m.b. nitrite 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1445 and B158DRAFT_1446 are separated by 381 nucleotidesB158DRAFT_1446 and B158DRAFT_1447 are separated by 1 nucleotides B158DRAFT_1445: B158DRAFT_1445 - Phenylalanine 4-hydroxylase (EC 1.14.16.1), at 1,498,797 to 1,499,600 _1445 B158DRAFT_1446: B158DRAFT_1446 - 4-hydroxyphenylpyruvate dioxygenase, at 1,499,982 to 1,501,043 _1446 B158DRAFT_1447: B158DRAFT_1447 - homogentisate 1,2-dioxygenase (EC 1.13.11.5), at 1,501,045 to 1,502,175 _1447 Position (kb) 1499 1500 1501 1502Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1499.036 kb on - strand, within B158DRAFT_1445at 1499.085 kb on + strand, within B158DRAFT_1445at 1499.085 kb on + strand, within B158DRAFT_1445at 1499.106 kb on + strand, within B158DRAFT_1445at 1499.216 kb on - strand, within B158DRAFT_1445at 1499.229 kb on + strand, within B158DRAFT_1445at 1499.254 kb on - strand, within B158DRAFT_1445at 1499.303 kb on - strand, within B158DRAFT_1445at 1499.325 kb on - strand, within B158DRAFT_1445at 1499.348 kb on + strand, within B158DRAFT_1445at 1499.386 kb on + strand, within B158DRAFT_1445at 1499.435 kb on + strand, within B158DRAFT_1445at 1499.439 kb on - strand, within B158DRAFT_1445at 1499.460 kb on + strand, within B158DRAFT_1445at 1499.509 kb on + strand, within B158DRAFT_1445at 1499.510 kb on + strand, within B158DRAFT_1445at 1499.528 kb on + strandat 1499.545 kb on + strandat 1499.555 kb on + strandat 1499.558 kb on - strandat 1499.562 kb on + strandat 1499.563 kb on - strandat 1499.600 kb on + strandat 1499.605 kb on + strandat 1499.717 kb on - strandat 1499.747 kb on + strandat 1499.747 kb on + strandat 1499.755 kb on - strandat 1499.758 kb on + strandat 1499.785 kb on - strandat 1499.795 kb on - strandat 1499.808 kb on + strandat 1499.867 kb on + strandat 1499.867 kb on + strandat 1499.874 kb on - strandat 1499.875 kb on - strandat 1499.875 kb on - strandat 1499.929 kb on - strandat 1500.010 kb on + strandat 1500.037 kb on + strandat 1500.177 kb on - strand, within B158DRAFT_1446at 1500.187 kb on + strand, within B158DRAFT_1446at 1500.224 kb on - strand, within B158DRAFT_1446at 1500.226 kb on + strand, within B158DRAFT_1446at 1500.233 kb on + strand, within B158DRAFT_1446at 1500.276 kb on + strand, within B158DRAFT_1446at 1500.284 kb on - strand, within B158DRAFT_1446at 1500.284 kb on - strand, within B158DRAFT_1446at 1500.286 kb on + strand, within B158DRAFT_1446at 1500.286 kb on + strand, within B158DRAFT_1446at 1500.294 kb on - strand, within B158DRAFT_1446at 1500.323 kb on - strand, within B158DRAFT_1446at 1500.351 kb on + strand, within B158DRAFT_1446at 1500.351 kb on + strand, within B158DRAFT_1446at 1500.351 kb on + strand, within B158DRAFT_1446at 1500.351 kb on + strand, within B158DRAFT_1446at 1500.351 kb on + strand, within B158DRAFT_1446at 1500.354 kb on - strand, within B158DRAFT_1446at 1500.359 kb on - strand, within B158DRAFT_1446at 1500.359 kb on - strand, within B158DRAFT_1446at 1500.359 kb on - strand, within B158DRAFT_1446at 1500.359 kb on - strand, within B158DRAFT_1446at 1500.359 kb on - strand, within B158DRAFT_1446at 1500.359 kb on - strand, within B158DRAFT_1446at 1500.359 kb on - strand, within B158DRAFT_1446at 1500.359 kb on - strand, within B158DRAFT_1446at 1500.359 kb on - strand, within B158DRAFT_1446at 1500.359 kb on - strand, within B158DRAFT_1446at 1500.359 kb on - strand, within B158DRAFT_1446at 1500.359 kb on - strand, within B158DRAFT_1446at 1500.359 kb on - strand, within B158DRAFT_1446at 1500.392 kb on - strand, within B158DRAFT_1446at 1500.445 kb on + strand, within B158DRAFT_1446at 1500.460 kb on + strand, within B158DRAFT_1446at 1500.460 kb on + strand, within B158DRAFT_1446at 1500.460 kb on - strand, within B158DRAFT_1446at 1500.481 kb on + strand, within B158DRAFT_1446at 1500.488 kb on + strand, within B158DRAFT_1446at 1500.496 kb on + strand, within B158DRAFT_1446at 1500.496 kb on + strand, within B158DRAFT_1446at 1500.496 kb on - strand, within B158DRAFT_1446at 1500.504 kb on - strand, within B158DRAFT_1446at 1500.579 kb on + strand, within B158DRAFT_1446at 1500.579 kb on + strand, within B158DRAFT_1446at 1500.579 kb on + strandat 1500.579 kb on + strand, within B158DRAFT_1446at 1500.587 kb on - strand, within B158DRAFT_1446at 1500.587 kb on - strand, within B158DRAFT_1446at 1500.587 kb on - strand, within B158DRAFT_1446at 1500.593 kb on + strand, within B158DRAFT_1446at 1500.680 kb on + strand, within B158DRAFT_1446at 1500.680 kb on + strand, within B158DRAFT_1446at 1500.686 kb on - strand, within B158DRAFT_1446at 1500.687 kb on + strand, within B158DRAFT_1446at 1500.688 kb on - strand, within B158DRAFT_1446at 1500.688 kb on - strand, within B158DRAFT_1446at 1500.688 kb on - strand, within B158DRAFT_1446at 1500.688 kb on - strand, within B158DRAFT_1446at 1500.696 kb on + strand, within B158DRAFT_1446at 1500.696 kb on + strand, within B158DRAFT_1446at 1500.702 kb on - strand, within B158DRAFT_1446at 1500.704 kb on - strand, within B158DRAFT_1446at 1500.778 kb on + strand, within B158DRAFT_1446at 1500.824 kb on + strand, within B158DRAFT_1446at 1500.881 kb on - strand, within B158DRAFT_1446at 1500.931 kb on - strand, within B158DRAFT_1446at 1500.953 kb on + strandat 1500.961 kb on - strandat 1500.961 kb on - strandat 1500.971 kb on - strandat 1500.994 kb on - strandat 1500.994 kb on - strandat 1501.006 kb on - strandat 1501.023 kb on + strandat 1501.037 kb on + strandat 1501.090 kb on + strandat 1501.090 kb on + strandat 1501.090 kb on + strandat 1501.090 kb on + strandat 1501.090 kb on + strandat 1501.095 kb on + strandat 1501.098 kb on - strandat 1501.108 kb on - strandat 1501.139 kb on - strandat 1501.155 kb on + strandat 1501.260 kb on + strand, within B158DRAFT_1447at 1501.260 kb on + strand, within B158DRAFT_1447at 1501.260 kb on + strand, within B158DRAFT_1447at 1501.260 kb on + strand, within B158DRAFT_1447at 1501.260 kb on + strand, within B158DRAFT_1447at 1501.260 kb on + strand, within B158DRAFT_1447at 1501.260 kb on + strand, within B158DRAFT_1447at 1501.260 kb on + strand, within B158DRAFT_1447at 1501.268 kb on - strand, within B158DRAFT_1447at 1501.268 kb on - strand, within B158DRAFT_1447at 1501.268 kb on - strand, within B158DRAFT_1447at 1501.268 kb on - strand, within B158DRAFT_1447at 1501.268 kb on - strand, within B158DRAFT_1447at 1501.268 kb on - strand, within B158DRAFT_1447at 1501.278 kb on - strand, within B158DRAFT_1447at 1501.283 kb on + strand, within B158DRAFT_1447at 1501.291 kb on + strand, within B158DRAFT_1447at 1501.291 kb on - strand, within B158DRAFT_1447at 1501.354 kb on - strand, within B158DRAFT_1447at 1501.395 kb on + strand, within B158DRAFT_1447at 1501.395 kb on + strand, within B158DRAFT_1447at 1501.395 kb on + strand, within B158DRAFT_1447at 1501.395 kb on + strand, within B158DRAFT_1447at 1501.403 kb on - strand, within B158DRAFT_1447at 1501.403 kb on - strand, within B158DRAFT_1447at 1501.403 kb on - strand, within B158DRAFT_1447at 1501.403 kb on - strand, within B158DRAFT_1447at 1501.403 kb on - strand, within B158DRAFT_1447at 1501.403 kb on - strand, within B158DRAFT_1447at 1501.403 kb on - strand, within B158DRAFT_1447at 1501.405 kb on + strand, within B158DRAFT_1447at 1501.413 kb on - strand, within B158DRAFT_1447at 1501.469 kb on + strand, within B158DRAFT_1447at 1501.609 kb on - strand, within B158DRAFT_1447at 1501.615 kb on + strand, within B158DRAFT_1447at 1501.651 kb on - strand, within B158DRAFT_1447at 1501.801 kb on + strand, within B158DRAFT_1447at 1501.801 kb on + strand, within B158DRAFT_1447at 1501.810 kb on + strand, within B158DRAFT_1447at 1501.876 kb on - strand, within B158DRAFT_1447at 1501.881 kb on - strand, within B158DRAFT_1447at 1501.924 kb on - strand, within B158DRAFT_1447at 1501.986 kb on - strand, within B158DRAFT_1447at 1502.002 kb on + strand, within B158DRAFT_1447at 1502.009 kb on + strand, within B158DRAFT_1447at 1502.030 kb on - strand, within B158DRAFT_1447at 1502.039 kb on - strand, within B158DRAFT_1447at 1502.041 kb on + strand, within B158DRAFT_1447at 1502.041 kb on + strand, within B158DRAFT_1447

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrite 20 mM
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1,499,036 - B158DRAFT_1445 0.30 -0.8
1,499,085 + B158DRAFT_1445 0.36 -1.9
1,499,085 + B158DRAFT_1445 0.36 -0.5
1,499,106 + B158DRAFT_1445 0.38 -0.6
1,499,216 - B158DRAFT_1445 0.52 +0.2
1,499,229 + B158DRAFT_1445 0.54 -2.9
1,499,254 - B158DRAFT_1445 0.57 -0.4
1,499,303 - B158DRAFT_1445 0.63 +0.4
1,499,325 - B158DRAFT_1445 0.66 +0.9
1,499,348 + B158DRAFT_1445 0.69 -0.5
1,499,386 + B158DRAFT_1445 0.73 -0.7
1,499,435 + B158DRAFT_1445 0.79 +0.6
1,499,439 - B158DRAFT_1445 0.80 -1.3
1,499,460 + B158DRAFT_1445 0.82 +0.0
1,499,509 + B158DRAFT_1445 0.89 +0.0
1,499,510 + B158DRAFT_1445 0.89 -0.6
1,499,528 + -1.3
1,499,545 + -0.8
1,499,555 + -0.6
1,499,558 - -1.1
1,499,562 + -2.5
1,499,563 - -1.4
1,499,600 + -1.0
1,499,605 + +0.4
1,499,717 - -1.6
1,499,747 + +1.0
1,499,747 + -1.9
1,499,755 - -1.1
1,499,758 + -0.1
1,499,785 - -1.3
1,499,795 - -0.5
1,499,808 + -1.2
1,499,867 + -0.2
1,499,867 + -1.2
1,499,874 - -0.2
1,499,875 - -0.2
1,499,875 - +1.0
1,499,929 - +1.3
1,500,010 + -1.6
1,500,037 + -0.7
1,500,177 - B158DRAFT_1446 0.18 +0.1
1,500,187 + B158DRAFT_1446 0.19 +0.2
1,500,224 - B158DRAFT_1446 0.23 -1.7
1,500,226 + B158DRAFT_1446 0.23 -2.3
1,500,233 + B158DRAFT_1446 0.24 -1.7
1,500,276 + B158DRAFT_1446 0.28 +0.4
1,500,284 - B158DRAFT_1446 0.28 -0.4
1,500,284 - B158DRAFT_1446 0.28 -1.1
1,500,286 + B158DRAFT_1446 0.29 -1.4
1,500,286 + B158DRAFT_1446 0.29 -1.5
1,500,294 - B158DRAFT_1446 0.29 -1.6
1,500,323 - B158DRAFT_1446 0.32 -0.3
1,500,351 + B158DRAFT_1446 0.35 -2.1
1,500,351 + B158DRAFT_1446 0.35 +0.4
1,500,351 + B158DRAFT_1446 0.35 -1.8
1,500,351 + B158DRAFT_1446 0.35 -1.2
1,500,351 + B158DRAFT_1446 0.35 -0.6
1,500,354 - B158DRAFT_1446 0.35 +3.3
1,500,359 - B158DRAFT_1446 0.35 -1.0
1,500,359 - B158DRAFT_1446 0.35 -1.9
1,500,359 - B158DRAFT_1446 0.35 -2.3
1,500,359 - B158DRAFT_1446 0.35 -0.3
1,500,359 - B158DRAFT_1446 0.35 -1.0
1,500,359 - B158DRAFT_1446 0.35 -2.0
1,500,359 - B158DRAFT_1446 0.35 -0.6
1,500,359 - B158DRAFT_1446 0.35 -0.8
1,500,359 - B158DRAFT_1446 0.35 -1.4
1,500,359 - B158DRAFT_1446 0.35 -3.3
1,500,359 - B158DRAFT_1446 0.35 -0.8
1,500,359 - B158DRAFT_1446 0.35 -2.8
1,500,359 - B158DRAFT_1446 0.35 -0.8
1,500,392 - B158DRAFT_1446 0.39 -0.7
1,500,445 + B158DRAFT_1446 0.44 -1.3
1,500,460 + B158DRAFT_1446 0.45 -3.4
1,500,460 + B158DRAFT_1446 0.45 +0.8
1,500,460 - B158DRAFT_1446 0.45 -0.8
1,500,481 + B158DRAFT_1446 0.47 +0.4
1,500,488 + B158DRAFT_1446 0.48 -1.0
1,500,496 + B158DRAFT_1446 0.48 -0.5
1,500,496 + B158DRAFT_1446 0.48 -1.8
1,500,496 - B158DRAFT_1446 0.48 -1.3
1,500,504 - B158DRAFT_1446 0.49 -1.7
1,500,579 + B158DRAFT_1446 0.56 -1.2
1,500,579 + B158DRAFT_1446 0.56 -3.0
1,500,579 + +2.7
1,500,579 + B158DRAFT_1446 0.56 -1.0
1,500,587 - B158DRAFT_1446 0.57 -2.0
1,500,587 - B158DRAFT_1446 0.57 -2.1
1,500,587 - B158DRAFT_1446 0.57 -2.2
1,500,593 + B158DRAFT_1446 0.58 -2.4
1,500,680 + B158DRAFT_1446 0.66 +1.2
1,500,680 + B158DRAFT_1446 0.66 -0.4
1,500,686 - B158DRAFT_1446 0.66 -0.5
1,500,687 + B158DRAFT_1446 0.66 -0.1
1,500,688 - B158DRAFT_1446 0.66 -1.0
1,500,688 - B158DRAFT_1446 0.66 -0.2
1,500,688 - B158DRAFT_1446 0.66 -0.8
1,500,688 - B158DRAFT_1446 0.66 -0.6
1,500,696 + B158DRAFT_1446 0.67 -0.2
1,500,696 + B158DRAFT_1446 0.67 -0.1
1,500,702 - B158DRAFT_1446 0.68 -2.3
1,500,704 - B158DRAFT_1446 0.68 -1.2
1,500,778 + B158DRAFT_1446 0.75 -2.1
1,500,824 + B158DRAFT_1446 0.79 -2.1
1,500,881 - B158DRAFT_1446 0.85 -2.5
1,500,931 - B158DRAFT_1446 0.89 -1.7
1,500,953 + -1.8
1,500,961 - -1.3
1,500,961 - +0.0
1,500,971 - -0.4
1,500,994 - -0.1
1,500,994 - -0.8
1,501,006 - -0.4
1,501,023 + -1.6
1,501,037 + -0.7
1,501,090 + -0.8
1,501,090 + +0.3
1,501,090 + +0.9
1,501,090 + -0.8
1,501,090 + +0.5
1,501,095 + -0.7
1,501,098 - -0.6
1,501,108 - +0.9
1,501,139 - -0.0
1,501,155 + -1.1
1,501,260 + B158DRAFT_1447 0.19 +1.4
1,501,260 + B158DRAFT_1447 0.19 +1.4
1,501,260 + B158DRAFT_1447 0.19 +0.0
1,501,260 + B158DRAFT_1447 0.19 +1.6
1,501,260 + B158DRAFT_1447 0.19 +0.7
1,501,260 + B158DRAFT_1447 0.19 +1.2
1,501,260 + B158DRAFT_1447 0.19 +0.6
1,501,260 + B158DRAFT_1447 0.19 -1.0
1,501,268 - B158DRAFT_1447 0.20 -0.1
1,501,268 - B158DRAFT_1447 0.20 +0.3
1,501,268 - B158DRAFT_1447 0.20 -0.3
1,501,268 - B158DRAFT_1447 0.20 -1.2
1,501,268 - B158DRAFT_1447 0.20 +0.2
1,501,268 - B158DRAFT_1447 0.20 +1.1
1,501,278 - B158DRAFT_1447 0.21 +0.7
1,501,283 + B158DRAFT_1447 0.21 +0.2
1,501,291 + B158DRAFT_1447 0.22 +0.1
1,501,291 - B158DRAFT_1447 0.22 +0.4
1,501,354 - B158DRAFT_1447 0.27 +1.0
1,501,395 + B158DRAFT_1447 0.31 +0.8
1,501,395 + B158DRAFT_1447 0.31 +0.7
1,501,395 + B158DRAFT_1447 0.31 +0.6
1,501,395 + B158DRAFT_1447 0.31 +1.2
1,501,403 - B158DRAFT_1447 0.32 -2.6
1,501,403 - B158DRAFT_1447 0.32 +1.1
1,501,403 - B158DRAFT_1447 0.32 +0.5
1,501,403 - B158DRAFT_1447 0.32 +0.8
1,501,403 - B158DRAFT_1447 0.32 +2.0
1,501,403 - B158DRAFT_1447 0.32 -1.3
1,501,403 - B158DRAFT_1447 0.32 +0.9
1,501,405 + B158DRAFT_1447 0.32 +1.8
1,501,413 - B158DRAFT_1447 0.33 +0.2
1,501,469 + B158DRAFT_1447 0.37 -0.3
1,501,609 - B158DRAFT_1447 0.50 -0.1
1,501,615 + B158DRAFT_1447 0.50 +0.1
1,501,651 - B158DRAFT_1447 0.54 +0.8
1,501,801 + B158DRAFT_1447 0.67 +0.8
1,501,801 + B158DRAFT_1447 0.67 -0.5
1,501,810 + B158DRAFT_1447 0.68 +0.9
1,501,876 - B158DRAFT_1447 0.73 +1.4
1,501,881 - B158DRAFT_1447 0.74 -0.6
1,501,924 - B158DRAFT_1447 0.78 -0.2
1,501,986 - B158DRAFT_1447 0.83 +0.2
1,502,002 + B158DRAFT_1447 0.85 +0.4
1,502,009 + B158DRAFT_1447 0.85 +1.4
1,502,030 - B158DRAFT_1447 0.87 +0.4
1,502,039 - B158DRAFT_1447 0.88 -0.1
1,502,041 + B158DRAFT_1447 0.88 +0.9
1,502,041 + B158DRAFT_1447 0.88 +1.1

Or see this region's nucleotide sequence