Experiment: m.b. nitrite 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_1391 and B158DRAFT_1392 are separated by 9 nucleotides B158DRAFT_1392 and B158DRAFT_1393 are separated by 5 nucleotides B158DRAFT_1393 and B158DRAFT_1394 are separated by 137 nucleotides B158DRAFT_1394 and B158DRAFT_1395 are separated by 20 nucleotides B158DRAFT_1395 and B158DRAFT_1396 are separated by 208 nucleotides
B158DRAFT_1391: B158DRAFT_1391 - sulfur relay protein TusB/DsrH, at 1,435,837 to 1,436,109
_1391
B158DRAFT_1392: B158DRAFT_1392 - sulfur relay protein TusC/DsrF, at 1,436,119 to 1,436,484
_1392
B158DRAFT_1393: B158DRAFT_1393 - sulfur relay protein TusD/DsrE, at 1,436,490 to 1,436,882
_1393
B158DRAFT_1394: B158DRAFT_1394 - Peptidase family M49., at 1,437,020 to 1,438,753
_1394
B158DRAFT_1395: B158DRAFT_1395 - Flavodoxin reductases (ferredoxin-NADPH reductases) family 1, at 1,438,774 to 1,439,505
_1395
B158DRAFT_1396: B158DRAFT_1396 - hypothetical protein, at 1,439,714 to 1,440,946
_1396
Position (kb)
1437
1438
1439 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 1436.117 kb on - strand at 1436.915 kb on - strand at 1436.915 kb on - strand at 1436.915 kb on - strand at 1436.915 kb on - strand at 1436.915 kb on - strand at 1436.930 kb on - strand at 1436.947 kb on - strand at 1437.006 kb on + strand at 1437.022 kb on + strand at 1437.047 kb on - strand at 1437.047 kb on - strand at 1437.235 kb on + strand, within B158DRAFT_1394 at 1437.236 kb on - strand, within B158DRAFT_1394 at 1437.345 kb on + strand, within B158DRAFT_1394 at 1437.345 kb on + strand, within B158DRAFT_1394 at 1437.345 kb on + strand, within B158DRAFT_1394 at 1437.348 kb on - strand, within B158DRAFT_1394 at 1437.353 kb on - strand, within B158DRAFT_1394 at 1437.353 kb on - strand, within B158DRAFT_1394 at 1437.358 kb on - strand, within B158DRAFT_1394 at 1437.383 kb on - strand, within B158DRAFT_1394 at 1437.442 kb on - strand, within B158DRAFT_1394 at 1437.461 kb on - strand, within B158DRAFT_1394 at 1437.559 kb on + strand, within B158DRAFT_1394 at 1437.601 kb on - strand, within B158DRAFT_1394 at 1437.693 kb on + strand, within B158DRAFT_1394 at 1437.727 kb on + strand, within B158DRAFT_1394 at 1437.741 kb on + strand, within B158DRAFT_1394 at 1437.763 kb on + strand, within B158DRAFT_1394 at 1437.766 kb on - strand, within B158DRAFT_1394 at 1437.766 kb on - strand, within B158DRAFT_1394 at 1437.768 kb on + strand, within B158DRAFT_1394 at 1437.810 kb on - strand, within B158DRAFT_1394 at 1437.827 kb on + strand, within B158DRAFT_1394 at 1437.835 kb on - strand, within B158DRAFT_1394 at 1437.850 kb on - strand, within B158DRAFT_1394 at 1437.961 kb on - strand, within B158DRAFT_1394 at 1438.017 kb on + strand, within B158DRAFT_1394 at 1438.022 kb on + strand, within B158DRAFT_1394 at 1438.030 kb on - strand, within B158DRAFT_1394 at 1438.035 kb on - strand, within B158DRAFT_1394 at 1438.080 kb on - strand, within B158DRAFT_1394 at 1438.084 kb on + strand, within B158DRAFT_1394 at 1438.092 kb on - strand, within B158DRAFT_1394 at 1438.092 kb on - strand, within B158DRAFT_1394 at 1438.108 kb on + strand, within B158DRAFT_1394 at 1438.182 kb on - strand, within B158DRAFT_1394 at 1438.248 kb on + strand, within B158DRAFT_1394 at 1438.264 kb on - strand, within B158DRAFT_1394 at 1438.266 kb on - strand, within B158DRAFT_1394 at 1438.266 kb on - strand, within B158DRAFT_1394 at 1438.301 kb on - strand, within B158DRAFT_1394 at 1438.301 kb on - strand, within B158DRAFT_1394 at 1438.353 kb on + strand, within B158DRAFT_1394 at 1438.424 kb on + strand, within B158DRAFT_1394 at 1438.425 kb on + strand, within B158DRAFT_1394 at 1438.480 kb on - strand, within B158DRAFT_1394 at 1438.485 kb on - strand, within B158DRAFT_1394 at 1438.540 kb on - strand, within B158DRAFT_1394 at 1438.572 kb on - strand, within B158DRAFT_1394 at 1438.572 kb on - strand, within B158DRAFT_1394 at 1438.613 kb on - strand at 1438.743 kb on + strand at 1438.810 kb on - strand at 1438.812 kb on + strand at 1438.812 kb on + strand at 1438.820 kb on - strand at 1438.918 kb on + strand, within B158DRAFT_1395 at 1439.036 kb on - strand, within B158DRAFT_1395 at 1439.036 kb on - strand, within B158DRAFT_1395 at 1439.056 kb on - strand, within B158DRAFT_1395 at 1439.068 kb on - strand, within B158DRAFT_1395 at 1439.127 kb on + strand, within B158DRAFT_1395 at 1439.142 kb on - strand, within B158DRAFT_1395 at 1439.144 kb on + strand, within B158DRAFT_1395 at 1439.183 kb on + strand, within B158DRAFT_1395 at 1439.184 kb on + strand, within B158DRAFT_1395 at 1439.191 kb on - strand, within B158DRAFT_1395 at 1439.191 kb on - strand, within B158DRAFT_1395 at 1439.191 kb on - strand, within B158DRAFT_1395 at 1439.263 kb on + strand, within B158DRAFT_1395 at 1439.353 kb on + strand, within B158DRAFT_1395 at 1439.410 kb on + strand, within B158DRAFT_1395 at 1439.412 kb on + strand, within B158DRAFT_1395 at 1439.420 kb on - strand, within B158DRAFT_1395 at 1439.420 kb on - strand, within B158DRAFT_1395 at 1439.438 kb on + strand at 1439.534 kb on + strand at 1439.542 kb on - strand at 1439.565 kb on + strand at 1439.611 kb on - strand at 1439.661 kb on - strand at 1439.738 kb on - strand at 1439.745 kb on + strand at 1439.753 kb on - strand at 1439.753 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 20 mM remove 1,436,117 - +0.9 1,436,915 - -1.1 1,436,915 - +2.2 1,436,915 - -0.3 1,436,915 - +0.4 1,436,915 - +1.2 1,436,930 - +1.0 1,436,947 - -0.4 1,437,006 + -1.1 1,437,022 + -0.3 1,437,047 - +1.0 1,437,047 - +0.8 1,437,235 + B158DRAFT_1394 0.12 -1.2 1,437,236 - B158DRAFT_1394 0.12 +1.2 1,437,345 + B158DRAFT_1394 0.19 +0.1 1,437,345 + B158DRAFT_1394 0.19 +0.6 1,437,345 + B158DRAFT_1394 0.19 -1.6 1,437,348 - B158DRAFT_1394 0.19 +0.2 1,437,353 - B158DRAFT_1394 0.19 -2.0 1,437,353 - B158DRAFT_1394 0.19 +2.1 1,437,358 - B158DRAFT_1394 0.19 -1.0 1,437,383 - B158DRAFT_1394 0.21 -0.9 1,437,442 - B158DRAFT_1394 0.24 -0.1 1,437,461 - B158DRAFT_1394 0.25 -0.1 1,437,559 + B158DRAFT_1394 0.31 +0.4 1,437,601 - B158DRAFT_1394 0.34 -1.9 1,437,693 + B158DRAFT_1394 0.39 -1.1 1,437,727 + B158DRAFT_1394 0.41 +1.6 1,437,741 + B158DRAFT_1394 0.42 -1.4 1,437,763 + B158DRAFT_1394 0.43 -3.2 1,437,766 - B158DRAFT_1394 0.43 -0.8 1,437,766 - B158DRAFT_1394 0.43 -1.3 1,437,768 + B158DRAFT_1394 0.43 -0.6 1,437,810 - B158DRAFT_1394 0.46 -1.6 1,437,827 + B158DRAFT_1394 0.47 -0.4 1,437,835 - B158DRAFT_1394 0.47 -1.0 1,437,850 - B158DRAFT_1394 0.48 -1.2 1,437,961 - B158DRAFT_1394 0.54 +1.0 1,438,017 + B158DRAFT_1394 0.57 -0.3 1,438,022 + B158DRAFT_1394 0.58 -1.3 1,438,030 - B158DRAFT_1394 0.58 +0.8 1,438,035 - B158DRAFT_1394 0.59 -0.8 1,438,080 - B158DRAFT_1394 0.61 -1.1 1,438,084 + B158DRAFT_1394 0.61 -0.1 1,438,092 - B158DRAFT_1394 0.62 -0.2 1,438,092 - B158DRAFT_1394 0.62 -0.4 1,438,108 + B158DRAFT_1394 0.63 +1.3 1,438,182 - B158DRAFT_1394 0.67 -1.6 1,438,248 + B158DRAFT_1394 0.71 +0.9 1,438,264 - B158DRAFT_1394 0.72 -0.0 1,438,266 - B158DRAFT_1394 0.72 +1.0 1,438,266 - B158DRAFT_1394 0.72 +0.7 1,438,301 - B158DRAFT_1394 0.74 -0.6 1,438,301 - B158DRAFT_1394 0.74 +3.8 1,438,353 + B158DRAFT_1394 0.77 -0.1 1,438,424 + B158DRAFT_1394 0.81 -1.2 1,438,425 + B158DRAFT_1394 0.81 +0.1 1,438,480 - B158DRAFT_1394 0.84 +0.8 1,438,485 - B158DRAFT_1394 0.84 -1.1 1,438,540 - B158DRAFT_1394 0.88 -1.1 1,438,572 - B158DRAFT_1394 0.90 -2.4 1,438,572 - B158DRAFT_1394 0.90 -1.5 1,438,613 - -0.6 1,438,743 + -0.7 1,438,810 - -0.8 1,438,812 + -0.8 1,438,812 + -0.1 1,438,820 - -1.1 1,438,918 + B158DRAFT_1395 0.20 -0.5 1,439,036 - B158DRAFT_1395 0.36 +0.6 1,439,036 - B158DRAFT_1395 0.36 +1.9 1,439,056 - B158DRAFT_1395 0.39 -0.0 1,439,068 - B158DRAFT_1395 0.40 -2.7 1,439,127 + B158DRAFT_1395 0.48 -0.1 1,439,142 - B158DRAFT_1395 0.50 -0.7 1,439,144 + B158DRAFT_1395 0.51 +0.8 1,439,183 + B158DRAFT_1395 0.56 +1.1 1,439,184 + B158DRAFT_1395 0.56 -0.3 1,439,191 - B158DRAFT_1395 0.57 -0.8 1,439,191 - B158DRAFT_1395 0.57 +0.2 1,439,191 - B158DRAFT_1395 0.57 +1.1 1,439,263 + B158DRAFT_1395 0.67 -1.4 1,439,353 + B158DRAFT_1395 0.79 -0.4 1,439,410 + B158DRAFT_1395 0.87 -0.3 1,439,412 + B158DRAFT_1395 0.87 +2.3 1,439,420 - B158DRAFT_1395 0.88 -0.3 1,439,420 - B158DRAFT_1395 0.88 -1.6 1,439,438 + +1.7 1,439,534 + -2.3 1,439,542 - -0.5 1,439,565 + -1.1 1,439,611 - +0.1 1,439,661 - +1.7 1,439,738 - +0.1 1,439,745 + -0.5 1,439,753 - -0.4 1,439,753 - +0.3
Or see this region's nucleotide sequence