Experiment: m.b. nitrite 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_1270 and B158DRAFT_1271 are separated by 344 nucleotides B158DRAFT_1271 and B158DRAFT_1272 are separated by 105 nucleotides B158DRAFT_1272 and B158DRAFT_1273 are separated by 22 nucleotides
B158DRAFT_1270: B158DRAFT_1270 - Outer membrane receptor proteins, mostly Fe transport, at 1,311,751 to 1,313,817
_1270
B158DRAFT_1271: B158DRAFT_1271 - hypothetical protein, at 1,314,162 to 1,314,695
_1271
B158DRAFT_1272: B158DRAFT_1272 - two component transcriptional regulator, LuxR family, at 1,314,801 to 1,315,439
_1272
B158DRAFT_1273: B158DRAFT_1273 - Excinuclease ABC subunit C, at 1,315,462 to 1,317,300
_1273
Position (kb)
1314
1315 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 1313.210 kb on + strand, within B158DRAFT_1270 at 1313.231 kb on + strand, within B158DRAFT_1270 at 1313.231 kb on + strand, within B158DRAFT_1270 at 1313.265 kb on + strand, within B158DRAFT_1270 at 1313.265 kb on + strand, within B158DRAFT_1270 at 1313.273 kb on - strand, within B158DRAFT_1270 at 1313.309 kb on + strand, within B158DRAFT_1270 at 1313.344 kb on - strand, within B158DRAFT_1270 at 1313.357 kb on + strand, within B158DRAFT_1270 at 1313.363 kb on - strand, within B158DRAFT_1270 at 1313.379 kb on - strand, within B158DRAFT_1270 at 1313.441 kb on + strand, within B158DRAFT_1270 at 1313.441 kb on + strand, within B158DRAFT_1270 at 1313.526 kb on - strand, within B158DRAFT_1270 at 1313.559 kb on + strand, within B158DRAFT_1270 at 1313.559 kb on + strand, within B158DRAFT_1270 at 1313.559 kb on + strand, within B158DRAFT_1270 at 1313.559 kb on + strand, within B158DRAFT_1270 at 1313.567 kb on - strand, within B158DRAFT_1270 at 1313.567 kb on - strand, within B158DRAFT_1270 at 1313.567 kb on - strand, within B158DRAFT_1270 at 1313.567 kb on - strand, within B158DRAFT_1270 at 1313.567 kb on - strand, within B158DRAFT_1270 at 1313.567 kb on - strand, within B158DRAFT_1270 at 1313.567 kb on - strand, within B158DRAFT_1270 at 1313.567 kb on - strand, within B158DRAFT_1270 at 1313.567 kb on - strand, within B158DRAFT_1270 at 1313.567 kb on - strand, within B158DRAFT_1270 at 1313.567 kb on - strand, within B158DRAFT_1270 at 1313.623 kb on + strand at 1313.631 kb on - strand at 1313.724 kb on + strand at 1313.726 kb on - strand at 1313.753 kb on + strand at 1313.798 kb on + strand at 1313.861 kb on + strand at 1313.861 kb on + strand at 1313.861 kb on + strand at 1313.861 kb on + strand at 1313.866 kb on + strand at 1313.866 kb on + strand at 1313.866 kb on + strand at 1313.866 kb on + strand at 1313.866 kb on + strand at 1313.867 kb on + strand at 1313.874 kb on - strand at 1313.874 kb on - strand at 1313.875 kb on - strand at 1313.930 kb on - strand at 1314.025 kb on + strand at 1314.025 kb on + strand at 1314.090 kb on + strand at 1314.090 kb on + strand at 1314.137 kb on + strand at 1314.139 kb on - strand at 1314.199 kb on - strand at 1314.222 kb on - strand, within B158DRAFT_1271 at 1314.225 kb on + strand, within B158DRAFT_1271 at 1314.231 kb on + strand, within B158DRAFT_1271 at 1314.368 kb on + strand, within B158DRAFT_1271 at 1314.405 kb on - strand, within B158DRAFT_1271 at 1314.481 kb on + strand, within B158DRAFT_1271 at 1314.485 kb on + strand, within B158DRAFT_1271 at 1314.529 kb on + strand, within B158DRAFT_1271 at 1314.535 kb on + strand, within B158DRAFT_1271 at 1314.553 kb on - strand, within B158DRAFT_1271 at 1314.569 kb on + strand, within B158DRAFT_1271 at 1314.577 kb on - strand, within B158DRAFT_1271 at 1314.625 kb on + strand, within B158DRAFT_1271 at 1314.637 kb on + strand, within B158DRAFT_1271 at 1314.712 kb on - strand at 1314.721 kb on - strand at 1314.792 kb on - strand at 1314.826 kb on - strand at 1314.846 kb on + strand at 1314.846 kb on + strand at 1314.846 kb on + strand at 1314.854 kb on - strand at 1314.854 kb on - strand at 1314.854 kb on - strand at 1314.854 kb on - strand at 1314.933 kb on + strand, within B158DRAFT_1272 at 1314.934 kb on - strand, within B158DRAFT_1272 at 1314.940 kb on + strand, within B158DRAFT_1272 at 1315.005 kb on + strand, within B158DRAFT_1272 at 1315.021 kb on - strand, within B158DRAFT_1272 at 1315.032 kb on - strand, within B158DRAFT_1272 at 1315.049 kb on + strand, within B158DRAFT_1272 at 1315.054 kb on + strand, within B158DRAFT_1272 at 1315.054 kb on + strand, within B158DRAFT_1272 at 1315.057 kb on - strand, within B158DRAFT_1272 at 1315.061 kb on + strand, within B158DRAFT_1272 at 1315.062 kb on - strand, within B158DRAFT_1272 at 1315.066 kb on + strand, within B158DRAFT_1272 at 1315.069 kb on - strand, within B158DRAFT_1272 at 1315.074 kb on - strand, within B158DRAFT_1272 at 1315.076 kb on + strand, within B158DRAFT_1272 at 1315.097 kb on + strand, within B158DRAFT_1272 at 1315.114 kb on - strand, within B158DRAFT_1272 at 1315.133 kb on + strand, within B158DRAFT_1272 at 1315.133 kb on + strand, within B158DRAFT_1272 at 1315.133 kb on + strand, within B158DRAFT_1272 at 1315.133 kb on + strand, within B158DRAFT_1272 at 1315.133 kb on + strand, within B158DRAFT_1272 at 1315.133 kb on + strand, within B158DRAFT_1272 at 1315.133 kb on + strand, within B158DRAFT_1272 at 1315.141 kb on - strand, within B158DRAFT_1272 at 1315.141 kb on - strand, within B158DRAFT_1272 at 1315.141 kb on - strand, within B158DRAFT_1272 at 1315.141 kb on - strand, within B158DRAFT_1272 at 1315.141 kb on - strand, within B158DRAFT_1272 at 1315.141 kb on - strand, within B158DRAFT_1272 at 1315.174 kb on - strand, within B158DRAFT_1272 at 1315.296 kb on + strand, within B158DRAFT_1272 at 1315.319 kb on + strand, within B158DRAFT_1272 at 1315.351 kb on - strand, within B158DRAFT_1272 at 1315.440 kb on + strand at 1315.450 kb on + strand at 1315.458 kb on + strand at 1315.458 kb on - strand at 1315.458 kb on - strand at 1315.458 kb on - strand at 1315.464 kb on - strand at 1315.464 kb on - strand at 1315.482 kb on - strand at 1315.575 kb on - strand at 1315.644 kb on + strand at 1315.689 kb on - strand, within B158DRAFT_1273
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 20 mM remove 1,313,210 + B158DRAFT_1270 0.71 -0.1 1,313,231 + B158DRAFT_1270 0.72 +0.9 1,313,231 + B158DRAFT_1270 0.72 +0.6 1,313,265 + B158DRAFT_1270 0.73 -0.8 1,313,265 + B158DRAFT_1270 0.73 -0.9 1,313,273 - B158DRAFT_1270 0.74 +2.7 1,313,309 + B158DRAFT_1270 0.75 +0.4 1,313,344 - B158DRAFT_1270 0.77 +0.4 1,313,357 + B158DRAFT_1270 0.78 +0.9 1,313,363 - B158DRAFT_1270 0.78 -0.0 1,313,379 - B158DRAFT_1270 0.79 -0.9 1,313,441 + B158DRAFT_1270 0.82 -0.2 1,313,441 + B158DRAFT_1270 0.82 -0.3 1,313,526 - B158DRAFT_1270 0.86 +1.1 1,313,559 + B158DRAFT_1270 0.87 +2.2 1,313,559 + B158DRAFT_1270 0.87 -0.5 1,313,559 + B158DRAFT_1270 0.87 -0.4 1,313,559 + B158DRAFT_1270 0.87 -1.5 1,313,567 - B158DRAFT_1270 0.88 -1.2 1,313,567 - B158DRAFT_1270 0.88 -0.8 1,313,567 - B158DRAFT_1270 0.88 +0.7 1,313,567 - B158DRAFT_1270 0.88 -0.6 1,313,567 - B158DRAFT_1270 0.88 -2.5 1,313,567 - B158DRAFT_1270 0.88 -1.2 1,313,567 - B158DRAFT_1270 0.88 +0.2 1,313,567 - B158DRAFT_1270 0.88 -0.3 1,313,567 - B158DRAFT_1270 0.88 +1.0 1,313,567 - B158DRAFT_1270 0.88 +0.8 1,313,567 - B158DRAFT_1270 0.88 -0.1 1,313,623 + -0.7 1,313,631 - -0.1 1,313,724 + -0.1 1,313,726 - -1.1 1,313,753 + +0.1 1,313,798 + -0.4 1,313,861 + -0.7 1,313,861 + -1.3 1,313,861 + +0.8 1,313,861 + +3.3 1,313,866 + -0.6 1,313,866 + -2.2 1,313,866 + -1.4 1,313,866 + -0.9 1,313,866 + -0.8 1,313,867 + +1.3 1,313,874 - -1.6 1,313,874 - +0.1 1,313,875 - -0.0 1,313,930 - +0.8 1,314,025 + -1.2 1,314,025 + -0.7 1,314,090 + +1.2 1,314,090 + -0.5 1,314,137 + +1.8 1,314,139 - +3.9 1,314,199 - -1.1 1,314,222 - B158DRAFT_1271 0.11 +0.1 1,314,225 + B158DRAFT_1271 0.12 +0.4 1,314,231 + B158DRAFT_1271 0.13 -0.1 1,314,368 + B158DRAFT_1271 0.39 +2.0 1,314,405 - B158DRAFT_1271 0.46 +0.9 1,314,481 + B158DRAFT_1271 0.60 -0.8 1,314,485 + B158DRAFT_1271 0.60 +0.6 1,314,529 + B158DRAFT_1271 0.69 -0.8 1,314,535 + B158DRAFT_1271 0.70 +0.8 1,314,553 - B158DRAFT_1271 0.73 -0.6 1,314,569 + B158DRAFT_1271 0.76 +0.9 1,314,577 - B158DRAFT_1271 0.78 +2.0 1,314,625 + B158DRAFT_1271 0.87 -0.1 1,314,637 + B158DRAFT_1271 0.89 +0.1 1,314,712 - +1.0 1,314,721 - -0.9 1,314,792 - +0.5 1,314,826 - +0.1 1,314,846 + -1.0 1,314,846 + -1.1 1,314,846 + -1.1 1,314,854 - +0.6 1,314,854 - -0.3 1,314,854 - -0.1 1,314,854 - -1.4 1,314,933 + B158DRAFT_1272 0.21 -0.0 1,314,934 - B158DRAFT_1272 0.21 -2.2 1,314,940 + B158DRAFT_1272 0.22 +2.7 1,315,005 + B158DRAFT_1272 0.32 +1.5 1,315,021 - B158DRAFT_1272 0.34 -1.8 1,315,032 - B158DRAFT_1272 0.36 -2.0 1,315,049 + B158DRAFT_1272 0.39 -1.1 1,315,054 + B158DRAFT_1272 0.40 +0.1 1,315,054 + B158DRAFT_1272 0.40 +0.2 1,315,057 - B158DRAFT_1272 0.40 +1.5 1,315,061 + B158DRAFT_1272 0.41 +1.2 1,315,062 - B158DRAFT_1272 0.41 -0.2 1,315,066 + B158DRAFT_1272 0.41 -1.0 1,315,069 - B158DRAFT_1272 0.42 +0.6 1,315,074 - B158DRAFT_1272 0.43 -0.1 1,315,076 + B158DRAFT_1272 0.43 -1.2 1,315,097 + B158DRAFT_1272 0.46 -2.0 1,315,114 - B158DRAFT_1272 0.49 -0.5 1,315,133 + B158DRAFT_1272 0.52 -0.2 1,315,133 + B158DRAFT_1272 0.52 +0.2 1,315,133 + B158DRAFT_1272 0.52 -1.0 1,315,133 + B158DRAFT_1272 0.52 -2.4 1,315,133 + B158DRAFT_1272 0.52 -0.6 1,315,133 + B158DRAFT_1272 0.52 +0.5 1,315,133 + B158DRAFT_1272 0.52 +0.5 1,315,141 - B158DRAFT_1272 0.53 -0.5 1,315,141 - B158DRAFT_1272 0.53 -2.4 1,315,141 - B158DRAFT_1272 0.53 -0.4 1,315,141 - B158DRAFT_1272 0.53 -0.2 1,315,141 - B158DRAFT_1272 0.53 -0.1 1,315,141 - B158DRAFT_1272 0.53 -0.7 1,315,174 - B158DRAFT_1272 0.58 -2.6 1,315,296 + B158DRAFT_1272 0.77 -1.6 1,315,319 + B158DRAFT_1272 0.81 -0.9 1,315,351 - B158DRAFT_1272 0.86 +1.5 1,315,440 + +0.6 1,315,450 + +2.7 1,315,458 + -0.3 1,315,458 - -0.6 1,315,458 - +0.4 1,315,458 - +0.5 1,315,464 - +0.1 1,315,464 - +3.3 1,315,482 - -1.2 1,315,575 - +0.7 1,315,644 + +1.3 1,315,689 - B158DRAFT_1273 0.12 +0.8
Or see this region's nucleotide sequence