Experiment: m.b. nitrite 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_1261 and B158DRAFT_1262 are separated by 31 nucleotides B158DRAFT_1262 and B158DRAFT_1263 overlap by 23 nucleotides B158DRAFT_1263 and B158DRAFT_1264 are separated by 96 nucleotides B158DRAFT_1264 and B158DRAFT_1265 are separated by 141 nucleotides
B158DRAFT_1261: B158DRAFT_1261 - phenylalanyl-tRNA synthetase beta subunit (EC 6.1.1.20), at 1,298,136 to 1,300,514
_1261
B158DRAFT_1262: B158DRAFT_1262 - integration host factor, alpha subunit, at 1,300,546 to 1,300,848
_1262
B158DRAFT_1263: B158DRAFT_1263 - Predicted transcriptional regulators, at 1,300,826 to 1,301,176
_1263
B158DRAFT_1264: B158DRAFT_1264 - tRNA_Pro_GGG, at 1,301,273 to 1,301,349
_1264
B158DRAFT_1265: B158DRAFT_1265 - tRNA_Ser_TGA, at 1,301,491 to 1,301,581
_1265
Position (kb)
1300
1301 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1300.588 kb on + strand, within B158DRAFT_1262 at 1300.622 kb on + strand, within B158DRAFT_1262 at 1300.644 kb on + strand, within B158DRAFT_1262 at 1300.644 kb on + strand, within B158DRAFT_1262 at 1300.725 kb on + strand, within B158DRAFT_1262 at 1300.732 kb on - strand, within B158DRAFT_1262 at 1300.784 kb on + strand, within B158DRAFT_1262 at 1300.785 kb on + strand, within B158DRAFT_1262 at 1300.793 kb on - strand, within B158DRAFT_1262 at 1300.826 kb on + strand at 1301.169 kb on - strand at 1301.179 kb on - strand at 1301.228 kb on + strand at 1301.230 kb on + strand at 1301.240 kb on - strand at 1301.287 kb on + strand, within B158DRAFT_1264 at 1301.287 kb on + strand, within B158DRAFT_1264 at 1301.293 kb on - strand, within B158DRAFT_1264 at 1301.300 kb on + strand, within B158DRAFT_1264 at 1301.308 kb on + strand, within B158DRAFT_1264 at 1301.310 kb on + strand, within B158DRAFT_1264 at 1301.316 kb on - strand, within B158DRAFT_1264 at 1301.318 kb on + strand, within B158DRAFT_1264 at 1301.326 kb on + strand, within B158DRAFT_1264 at 1301.326 kb on - strand, within B158DRAFT_1264 at 1301.326 kb on - strand, within B158DRAFT_1264 at 1301.326 kb on - strand, within B158DRAFT_1264 at 1301.335 kb on - strand, within B158DRAFT_1264 at 1301.396 kb on - strand at 1301.401 kb on - strand at 1301.648 kb on + strand at 1301.718 kb on - strand at 1301.741 kb on - strand at 1301.741 kb on - strand at 1301.818 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 20 mM remove 1,300,588 + B158DRAFT_1262 0.14 +0.2 1,300,622 + B158DRAFT_1262 0.25 +0.1 1,300,644 + B158DRAFT_1262 0.32 +0.7 1,300,644 + B158DRAFT_1262 0.32 +2.3 1,300,725 + B158DRAFT_1262 0.59 +0.8 1,300,732 - B158DRAFT_1262 0.61 +2.4 1,300,784 + B158DRAFT_1262 0.79 +1.2 1,300,785 + B158DRAFT_1262 0.79 +1.9 1,300,793 - B158DRAFT_1262 0.82 +0.8 1,300,826 + -0.3 1,301,169 - +2.3 1,301,179 - -0.5 1,301,228 + -1.4 1,301,230 + -0.3 1,301,240 - -0.7 1,301,287 + B158DRAFT_1264 0.18 +0.2 1,301,287 + B158DRAFT_1264 0.18 -2.9 1,301,293 - B158DRAFT_1264 0.26 +1.1 1,301,300 + B158DRAFT_1264 0.35 +0.5 1,301,308 + B158DRAFT_1264 0.45 -2.2 1,301,310 + B158DRAFT_1264 0.48 -1.6 1,301,316 - B158DRAFT_1264 0.56 -0.4 1,301,318 + B158DRAFT_1264 0.58 +0.7 1,301,326 + B158DRAFT_1264 0.69 -1.4 1,301,326 - B158DRAFT_1264 0.69 +0.8 1,301,326 - B158DRAFT_1264 0.69 +0.7 1,301,326 - B158DRAFT_1264 0.69 +1.2 1,301,335 - B158DRAFT_1264 0.81 +0.4 1,301,396 - -0.9 1,301,401 - -0.2 1,301,648 + -0.9 1,301,718 - +0.2 1,301,741 - -0.7 1,301,741 - -1.5 1,301,818 - -0.8
Or see this region's nucleotide sequence