Experiment: m.b. nitrite 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_1253 and B158DRAFT_1254 are separated by 69 nucleotides B158DRAFT_1254 and B158DRAFT_1255 are separated by 263 nucleotides B158DRAFT_1255 and B158DRAFT_1256 are separated by 79 nucleotides B158DRAFT_1256 and B158DRAFT_1258 are separated by 154 nucleotides B158DRAFT_1258 and B158DRAFT_1259 are separated by 15 nucleotides
B158DRAFT_1253: B158DRAFT_1253 - Predicted permeases, at 1,292,164 to 1,292,919
_1253
B158DRAFT_1254: B158DRAFT_1254 - Uncharacterized conserved protein, at 1,292,989 to 1,293,441
_1254
B158DRAFT_1255: B158DRAFT_1255 - threonyl-tRNA synthetase (EC 6.1.1.3), at 1,293,705 to 1,295,624
_1255
B158DRAFT_1256: B158DRAFT_1256 - translation initiation factor IF-3, at 1,295,704 to 1,296,183
_1256
B158DRAFT_1258: B158DRAFT_1258 - ribosomal protein L35, at 1,296,338 to 1,296,535
_1258
B158DRAFT_1259: B158DRAFT_1259 - ribosomal protein L20, at 1,296,551 to 1,296,910
_1259
Position (kb)
1293
1294
1295
1296 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1292.729 kb on + strand, within B158DRAFT_1253 at 1292.729 kb on + strand, within B158DRAFT_1253 at 1292.737 kb on - strand, within B158DRAFT_1253 at 1292.737 kb on - strand, within B158DRAFT_1253 at 1292.737 kb on - strand, within B158DRAFT_1253 at 1292.793 kb on - strand, within B158DRAFT_1253 at 1292.795 kb on + strand, within B158DRAFT_1253 at 1292.795 kb on + strand, within B158DRAFT_1253 at 1292.899 kb on + strand at 1292.899 kb on + strand at 1292.907 kb on - strand at 1292.961 kb on + strand at 1292.961 kb on + strand at 1292.968 kb on + strand at 1292.969 kb on - strand at 1292.969 kb on - strand at 1292.969 kb on - strand at 1292.969 kb on - strand at 1292.969 kb on - strand at 1292.969 kb on - strand at 1292.969 kb on - strand at 1292.969 kb on - strand at 1292.974 kb on - strand at 1292.974 kb on - strand at 1292.974 kb on - strand at 1293.034 kb on - strand at 1293.116 kb on + strand, within B158DRAFT_1254 at 1293.116 kb on + strand, within B158DRAFT_1254 at 1293.116 kb on + strand, within B158DRAFT_1254 at 1293.116 kb on + strand, within B158DRAFT_1254 at 1293.116 kb on + strand, within B158DRAFT_1254 at 1293.116 kb on + strand, within B158DRAFT_1254 at 1293.116 kb on + strand, within B158DRAFT_1254 at 1293.116 kb on + strand, within B158DRAFT_1254 at 1293.116 kb on + strand, within B158DRAFT_1254 at 1293.116 kb on + strand, within B158DRAFT_1254 at 1293.116 kb on + strand, within B158DRAFT_1254 at 1293.116 kb on + strand, within B158DRAFT_1254 at 1293.116 kb on + strand, within B158DRAFT_1254 at 1293.116 kb on + strand, within B158DRAFT_1254 at 1293.124 kb on - strand, within B158DRAFT_1254 at 1293.124 kb on - strand, within B158DRAFT_1254 at 1293.124 kb on - strand, within B158DRAFT_1254 at 1293.124 kb on - strand, within B158DRAFT_1254 at 1293.124 kb on - strand, within B158DRAFT_1254 at 1293.124 kb on - strand, within B158DRAFT_1254 at 1293.124 kb on - strand, within B158DRAFT_1254 at 1293.124 kb on - strand, within B158DRAFT_1254 at 1293.170 kb on - strand, within B158DRAFT_1254 at 1293.192 kb on + strand, within B158DRAFT_1254 at 1293.210 kb on + strand, within B158DRAFT_1254 at 1293.210 kb on + strand, within B158DRAFT_1254 at 1293.210 kb on + strand, within B158DRAFT_1254 at 1293.215 kb on + strand, within B158DRAFT_1254 at 1293.218 kb on - strand, within B158DRAFT_1254 at 1293.225 kb on + strand, within B158DRAFT_1254 at 1293.225 kb on - strand, within B158DRAFT_1254 at 1293.233 kb on - strand, within B158DRAFT_1254 at 1293.233 kb on - strand, within B158DRAFT_1254 at 1293.261 kb on + strand, within B158DRAFT_1254 at 1293.271 kb on + strand, within B158DRAFT_1254 at 1293.338 kb on - strand, within B158DRAFT_1254 at 1293.346 kb on + strand, within B158DRAFT_1254 at 1293.346 kb on + strand, within B158DRAFT_1254 at 1293.346 kb on + strand, within B158DRAFT_1254 at 1293.354 kb on - strand, within B158DRAFT_1254 at 1293.354 kb on - strand, within B158DRAFT_1254 at 1293.384 kb on + strand, within B158DRAFT_1254 at 1293.384 kb on + strand, within B158DRAFT_1254 at 1293.384 kb on + strand, within B158DRAFT_1254 at 1293.384 kb on + strand, within B158DRAFT_1254 at 1293.384 kb on + strand, within B158DRAFT_1254 at 1293.384 kb on + strand, within B158DRAFT_1254 at 1293.384 kb on + strand, within B158DRAFT_1254 at 1293.384 kb on + strand, within B158DRAFT_1254 at 1293.384 kb on + strand, within B158DRAFT_1254 at 1293.384 kb on + strand, within B158DRAFT_1254 at 1293.384 kb on + strand, within B158DRAFT_1254 at 1293.392 kb on - strand, within B158DRAFT_1254 at 1293.392 kb on - strand, within B158DRAFT_1254 at 1293.392 kb on - strand, within B158DRAFT_1254 at 1293.392 kb on - strand, within B158DRAFT_1254 at 1293.392 kb on - strand, within B158DRAFT_1254 at 1293.392 kb on - strand, within B158DRAFT_1254 at 1293.392 kb on - strand, within B158DRAFT_1254 at 1293.392 kb on - strand, within B158DRAFT_1254 at 1293.392 kb on - strand, within B158DRAFT_1254 at 1293.392 kb on - strand, within B158DRAFT_1254 at 1293.392 kb on - strand, within B158DRAFT_1254 at 1293.392 kb on - strand, within B158DRAFT_1254 at 1293.392 kb on - strand, within B158DRAFT_1254 at 1293.392 kb on - strand, within B158DRAFT_1254 at 1293.392 kb on - strand, within B158DRAFT_1254 at 1293.392 kb on - strand, within B158DRAFT_1254 at 1293.392 kb on - strand, within B158DRAFT_1254 at 1293.423 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 20 mM remove 1,292,729 + B158DRAFT_1253 0.75 -1.9 1,292,729 + B158DRAFT_1253 0.75 -0.1 1,292,737 - B158DRAFT_1253 0.76 -1.5 1,292,737 - B158DRAFT_1253 0.76 -0.8 1,292,737 - B158DRAFT_1253 0.76 +0.6 1,292,793 - B158DRAFT_1253 0.83 -1.0 1,292,795 + B158DRAFT_1253 0.83 -2.0 1,292,795 + B158DRAFT_1253 0.83 -0.7 1,292,899 + -0.2 1,292,899 + +0.1 1,292,907 - -1.1 1,292,961 + +0.8 1,292,961 + -0.5 1,292,968 + -1.7 1,292,969 - +0.4 1,292,969 - -0.6 1,292,969 - +0.8 1,292,969 - -1.2 1,292,969 - -2.1 1,292,969 - -1.6 1,292,969 - -0.3 1,292,969 - +0.8 1,292,974 - -0.4 1,292,974 - -1.3 1,292,974 - -0.1 1,293,034 - +0.1 1,293,116 + B158DRAFT_1254 0.28 -1.8 1,293,116 + B158DRAFT_1254 0.28 -2.0 1,293,116 + B158DRAFT_1254 0.28 -1.4 1,293,116 + B158DRAFT_1254 0.28 +0.3 1,293,116 + B158DRAFT_1254 0.28 -0.4 1,293,116 + B158DRAFT_1254 0.28 +0.7 1,293,116 + B158DRAFT_1254 0.28 -0.7 1,293,116 + B158DRAFT_1254 0.28 -0.9 1,293,116 + B158DRAFT_1254 0.28 -0.1 1,293,116 + B158DRAFT_1254 0.28 -2.2 1,293,116 + B158DRAFT_1254 0.28 -0.5 1,293,116 + B158DRAFT_1254 0.28 -0.9 1,293,116 + B158DRAFT_1254 0.28 -1.2 1,293,116 + B158DRAFT_1254 0.28 +0.3 1,293,124 - B158DRAFT_1254 0.30 -1.2 1,293,124 - B158DRAFT_1254 0.30 -0.4 1,293,124 - B158DRAFT_1254 0.30 -1.0 1,293,124 - B158DRAFT_1254 0.30 +0.6 1,293,124 - B158DRAFT_1254 0.30 -2.9 1,293,124 - B158DRAFT_1254 0.30 -1.0 1,293,124 - B158DRAFT_1254 0.30 +0.2 1,293,124 - B158DRAFT_1254 0.30 -0.9 1,293,170 - B158DRAFT_1254 0.40 -0.6 1,293,192 + B158DRAFT_1254 0.45 -1.2 1,293,210 + B158DRAFT_1254 0.49 -0.4 1,293,210 + B158DRAFT_1254 0.49 -3.7 1,293,210 + B158DRAFT_1254 0.49 +1.3 1,293,215 + B158DRAFT_1254 0.50 -1.1 1,293,218 - B158DRAFT_1254 0.51 -0.3 1,293,225 + B158DRAFT_1254 0.52 -1.5 1,293,225 - B158DRAFT_1254 0.52 -1.2 1,293,233 - B158DRAFT_1254 0.54 -0.3 1,293,233 - B158DRAFT_1254 0.54 -0.2 1,293,261 + B158DRAFT_1254 0.60 -0.1 1,293,271 + B158DRAFT_1254 0.62 -1.1 1,293,338 - B158DRAFT_1254 0.77 -0.5 1,293,346 + B158DRAFT_1254 0.79 -1.6 1,293,346 + B158DRAFT_1254 0.79 +0.4 1,293,346 + B158DRAFT_1254 0.79 -1.7 1,293,354 - B158DRAFT_1254 0.81 -0.8 1,293,354 - B158DRAFT_1254 0.81 -0.1 1,293,384 + B158DRAFT_1254 0.87 -0.1 1,293,384 + B158DRAFT_1254 0.87 -2.3 1,293,384 + B158DRAFT_1254 0.87 -1.2 1,293,384 + B158DRAFT_1254 0.87 -1.0 1,293,384 + B158DRAFT_1254 0.87 +0.7 1,293,384 + B158DRAFT_1254 0.87 -0.9 1,293,384 + B158DRAFT_1254 0.87 -0.3 1,293,384 + B158DRAFT_1254 0.87 -1.4 1,293,384 + B158DRAFT_1254 0.87 -0.4 1,293,384 + B158DRAFT_1254 0.87 +2.3 1,293,384 + B158DRAFT_1254 0.87 -1.8 1,293,392 - B158DRAFT_1254 0.89 +1.0 1,293,392 - B158DRAFT_1254 0.89 -2.1 1,293,392 - B158DRAFT_1254 0.89 -0.5 1,293,392 - B158DRAFT_1254 0.89 +0.3 1,293,392 - B158DRAFT_1254 0.89 -1.3 1,293,392 - B158DRAFT_1254 0.89 -0.8 1,293,392 - B158DRAFT_1254 0.89 -1.3 1,293,392 - B158DRAFT_1254 0.89 -1.9 1,293,392 - B158DRAFT_1254 0.89 -0.7 1,293,392 - B158DRAFT_1254 0.89 -0.2 1,293,392 - B158DRAFT_1254 0.89 -0.4 1,293,392 - B158DRAFT_1254 0.89 +0.5 1,293,392 - B158DRAFT_1254 0.89 -0.4 1,293,392 - B158DRAFT_1254 0.89 -1.6 1,293,392 - B158DRAFT_1254 0.89 -0.8 1,293,392 - B158DRAFT_1254 0.89 -0.3 1,293,392 - B158DRAFT_1254 0.89 -2.1 1,293,423 + -0.7
Or see this region's nucleotide sequence