Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1255

Experiment: m.b. nitrite 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1253 and B158DRAFT_1254 are separated by 69 nucleotidesB158DRAFT_1254 and B158DRAFT_1255 are separated by 263 nucleotidesB158DRAFT_1255 and B158DRAFT_1256 are separated by 79 nucleotidesB158DRAFT_1256 and B158DRAFT_1258 are separated by 154 nucleotidesB158DRAFT_1258 and B158DRAFT_1259 are separated by 15 nucleotides B158DRAFT_1253: B158DRAFT_1253 - Predicted permeases, at 1,292,164 to 1,292,919 _1253 B158DRAFT_1254: B158DRAFT_1254 - Uncharacterized conserved protein, at 1,292,989 to 1,293,441 _1254 B158DRAFT_1255: B158DRAFT_1255 - threonyl-tRNA synthetase (EC 6.1.1.3), at 1,293,705 to 1,295,624 _1255 B158DRAFT_1256: B158DRAFT_1256 - translation initiation factor IF-3, at 1,295,704 to 1,296,183 _1256 B158DRAFT_1258: B158DRAFT_1258 - ribosomal protein L35, at 1,296,338 to 1,296,535 _1258 B158DRAFT_1259: B158DRAFT_1259 - ribosomal protein L20, at 1,296,551 to 1,296,910 _1259 Position (kb) 1293 1294 1295 1296Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1292.729 kb on + strand, within B158DRAFT_1253at 1292.729 kb on + strand, within B158DRAFT_1253at 1292.737 kb on - strand, within B158DRAFT_1253at 1292.737 kb on - strand, within B158DRAFT_1253at 1292.737 kb on - strand, within B158DRAFT_1253at 1292.793 kb on - strand, within B158DRAFT_1253at 1292.795 kb on + strand, within B158DRAFT_1253at 1292.795 kb on + strand, within B158DRAFT_1253at 1292.899 kb on + strandat 1292.899 kb on + strandat 1292.907 kb on - strandat 1292.961 kb on + strandat 1292.961 kb on + strandat 1292.968 kb on + strandat 1292.969 kb on - strandat 1292.969 kb on - strandat 1292.969 kb on - strandat 1292.969 kb on - strandat 1292.969 kb on - strandat 1292.969 kb on - strandat 1292.969 kb on - strandat 1292.969 kb on - strandat 1292.974 kb on - strandat 1292.974 kb on - strandat 1292.974 kb on - strandat 1293.034 kb on - strandat 1293.116 kb on + strand, within B158DRAFT_1254at 1293.116 kb on + strand, within B158DRAFT_1254at 1293.116 kb on + strand, within B158DRAFT_1254at 1293.116 kb on + strand, within B158DRAFT_1254at 1293.116 kb on + strand, within B158DRAFT_1254at 1293.116 kb on + strand, within B158DRAFT_1254at 1293.116 kb on + strand, within B158DRAFT_1254at 1293.116 kb on + strand, within B158DRAFT_1254at 1293.116 kb on + strand, within B158DRAFT_1254at 1293.116 kb on + strand, within B158DRAFT_1254at 1293.116 kb on + strand, within B158DRAFT_1254at 1293.116 kb on + strand, within B158DRAFT_1254at 1293.116 kb on + strand, within B158DRAFT_1254at 1293.116 kb on + strand, within B158DRAFT_1254at 1293.124 kb on - strand, within B158DRAFT_1254at 1293.124 kb on - strand, within B158DRAFT_1254at 1293.124 kb on - strand, within B158DRAFT_1254at 1293.124 kb on - strand, within B158DRAFT_1254at 1293.124 kb on - strand, within B158DRAFT_1254at 1293.124 kb on - strand, within B158DRAFT_1254at 1293.124 kb on - strand, within B158DRAFT_1254at 1293.124 kb on - strand, within B158DRAFT_1254at 1293.170 kb on - strand, within B158DRAFT_1254at 1293.192 kb on + strand, within B158DRAFT_1254at 1293.210 kb on + strand, within B158DRAFT_1254at 1293.210 kb on + strand, within B158DRAFT_1254at 1293.210 kb on + strand, within B158DRAFT_1254at 1293.215 kb on + strand, within B158DRAFT_1254at 1293.218 kb on - strand, within B158DRAFT_1254at 1293.225 kb on + strand, within B158DRAFT_1254at 1293.225 kb on - strand, within B158DRAFT_1254at 1293.233 kb on - strand, within B158DRAFT_1254at 1293.233 kb on - strand, within B158DRAFT_1254at 1293.261 kb on + strand, within B158DRAFT_1254at 1293.271 kb on + strand, within B158DRAFT_1254at 1293.338 kb on - strand, within B158DRAFT_1254at 1293.346 kb on + strand, within B158DRAFT_1254at 1293.346 kb on + strand, within B158DRAFT_1254at 1293.346 kb on + strand, within B158DRAFT_1254at 1293.354 kb on - strand, within B158DRAFT_1254at 1293.354 kb on - strand, within B158DRAFT_1254at 1293.384 kb on + strand, within B158DRAFT_1254at 1293.384 kb on + strand, within B158DRAFT_1254at 1293.384 kb on + strand, within B158DRAFT_1254at 1293.384 kb on + strand, within B158DRAFT_1254at 1293.384 kb on + strand, within B158DRAFT_1254at 1293.384 kb on + strand, within B158DRAFT_1254at 1293.384 kb on + strand, within B158DRAFT_1254at 1293.384 kb on + strand, within B158DRAFT_1254at 1293.384 kb on + strand, within B158DRAFT_1254at 1293.384 kb on + strand, within B158DRAFT_1254at 1293.384 kb on + strand, within B158DRAFT_1254at 1293.392 kb on - strand, within B158DRAFT_1254at 1293.392 kb on - strand, within B158DRAFT_1254at 1293.392 kb on - strand, within B158DRAFT_1254at 1293.392 kb on - strand, within B158DRAFT_1254at 1293.392 kb on - strand, within B158DRAFT_1254at 1293.392 kb on - strand, within B158DRAFT_1254at 1293.392 kb on - strand, within B158DRAFT_1254at 1293.392 kb on - strand, within B158DRAFT_1254at 1293.392 kb on - strand, within B158DRAFT_1254at 1293.392 kb on - strand, within B158DRAFT_1254at 1293.392 kb on - strand, within B158DRAFT_1254at 1293.392 kb on - strand, within B158DRAFT_1254at 1293.392 kb on - strand, within B158DRAFT_1254at 1293.392 kb on - strand, within B158DRAFT_1254at 1293.392 kb on - strand, within B158DRAFT_1254at 1293.392 kb on - strand, within B158DRAFT_1254at 1293.392 kb on - strand, within B158DRAFT_1254at 1293.423 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrite 20 mM
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1,292,729 + B158DRAFT_1253 0.75 -1.9
1,292,729 + B158DRAFT_1253 0.75 -0.1
1,292,737 - B158DRAFT_1253 0.76 -1.5
1,292,737 - B158DRAFT_1253 0.76 -0.8
1,292,737 - B158DRAFT_1253 0.76 +0.6
1,292,793 - B158DRAFT_1253 0.83 -1.0
1,292,795 + B158DRAFT_1253 0.83 -2.0
1,292,795 + B158DRAFT_1253 0.83 -0.7
1,292,899 + -0.2
1,292,899 + +0.1
1,292,907 - -1.1
1,292,961 + +0.8
1,292,961 + -0.5
1,292,968 + -1.7
1,292,969 - +0.4
1,292,969 - -0.6
1,292,969 - +0.8
1,292,969 - -1.2
1,292,969 - -2.1
1,292,969 - -1.6
1,292,969 - -0.3
1,292,969 - +0.8
1,292,974 - -0.4
1,292,974 - -1.3
1,292,974 - -0.1
1,293,034 - +0.1
1,293,116 + B158DRAFT_1254 0.28 -1.8
1,293,116 + B158DRAFT_1254 0.28 -2.0
1,293,116 + B158DRAFT_1254 0.28 -1.4
1,293,116 + B158DRAFT_1254 0.28 +0.3
1,293,116 + B158DRAFT_1254 0.28 -0.4
1,293,116 + B158DRAFT_1254 0.28 +0.7
1,293,116 + B158DRAFT_1254 0.28 -0.7
1,293,116 + B158DRAFT_1254 0.28 -0.9
1,293,116 + B158DRAFT_1254 0.28 -0.1
1,293,116 + B158DRAFT_1254 0.28 -2.2
1,293,116 + B158DRAFT_1254 0.28 -0.5
1,293,116 + B158DRAFT_1254 0.28 -0.9
1,293,116 + B158DRAFT_1254 0.28 -1.2
1,293,116 + B158DRAFT_1254 0.28 +0.3
1,293,124 - B158DRAFT_1254 0.30 -1.2
1,293,124 - B158DRAFT_1254 0.30 -0.4
1,293,124 - B158DRAFT_1254 0.30 -1.0
1,293,124 - B158DRAFT_1254 0.30 +0.6
1,293,124 - B158DRAFT_1254 0.30 -2.9
1,293,124 - B158DRAFT_1254 0.30 -1.0
1,293,124 - B158DRAFT_1254 0.30 +0.2
1,293,124 - B158DRAFT_1254 0.30 -0.9
1,293,170 - B158DRAFT_1254 0.40 -0.6
1,293,192 + B158DRAFT_1254 0.45 -1.2
1,293,210 + B158DRAFT_1254 0.49 -0.4
1,293,210 + B158DRAFT_1254 0.49 -3.7
1,293,210 + B158DRAFT_1254 0.49 +1.3
1,293,215 + B158DRAFT_1254 0.50 -1.1
1,293,218 - B158DRAFT_1254 0.51 -0.3
1,293,225 + B158DRAFT_1254 0.52 -1.5
1,293,225 - B158DRAFT_1254 0.52 -1.2
1,293,233 - B158DRAFT_1254 0.54 -0.3
1,293,233 - B158DRAFT_1254 0.54 -0.2
1,293,261 + B158DRAFT_1254 0.60 -0.1
1,293,271 + B158DRAFT_1254 0.62 -1.1
1,293,338 - B158DRAFT_1254 0.77 -0.5
1,293,346 + B158DRAFT_1254 0.79 -1.6
1,293,346 + B158DRAFT_1254 0.79 +0.4
1,293,346 + B158DRAFT_1254 0.79 -1.7
1,293,354 - B158DRAFT_1254 0.81 -0.8
1,293,354 - B158DRAFT_1254 0.81 -0.1
1,293,384 + B158DRAFT_1254 0.87 -0.1
1,293,384 + B158DRAFT_1254 0.87 -2.3
1,293,384 + B158DRAFT_1254 0.87 -1.2
1,293,384 + B158DRAFT_1254 0.87 -1.0
1,293,384 + B158DRAFT_1254 0.87 +0.7
1,293,384 + B158DRAFT_1254 0.87 -0.9
1,293,384 + B158DRAFT_1254 0.87 -0.3
1,293,384 + B158DRAFT_1254 0.87 -1.4
1,293,384 + B158DRAFT_1254 0.87 -0.4
1,293,384 + B158DRAFT_1254 0.87 +2.3
1,293,384 + B158DRAFT_1254 0.87 -1.8
1,293,392 - B158DRAFT_1254 0.89 +1.0
1,293,392 - B158DRAFT_1254 0.89 -2.1
1,293,392 - B158DRAFT_1254 0.89 -0.5
1,293,392 - B158DRAFT_1254 0.89 +0.3
1,293,392 - B158DRAFT_1254 0.89 -1.3
1,293,392 - B158DRAFT_1254 0.89 -0.8
1,293,392 - B158DRAFT_1254 0.89 -1.3
1,293,392 - B158DRAFT_1254 0.89 -1.9
1,293,392 - B158DRAFT_1254 0.89 -0.7
1,293,392 - B158DRAFT_1254 0.89 -0.2
1,293,392 - B158DRAFT_1254 0.89 -0.4
1,293,392 - B158DRAFT_1254 0.89 +0.5
1,293,392 - B158DRAFT_1254 0.89 -0.4
1,293,392 - B158DRAFT_1254 0.89 -1.6
1,293,392 - B158DRAFT_1254 0.89 -0.8
1,293,392 - B158DRAFT_1254 0.89 -0.3
1,293,392 - B158DRAFT_1254 0.89 -2.1
1,293,423 + -0.7

Or see this region's nucleotide sequence