Experiment: m.b. nitrite 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_1223 and B158DRAFT_1224 are separated by 4 nucleotides B158DRAFT_1224 and B158DRAFT_1225 are separated by 184 nucleotides B158DRAFT_1225 and B158DRAFT_1226 are separated by 139 nucleotides
B158DRAFT_1223: B158DRAFT_1223 - diguanylate cyclase/phosphodiesterase, at 1,259,916 to 1,261,430
_1223
B158DRAFT_1224: B158DRAFT_1224 - Nuclease-related domain., at 1,261,435 to 1,262,073
_1224
B158DRAFT_1225: B158DRAFT_1225 - Ribonucleotide reductase, beta subunit, at 1,262,258 to 1,263,517
_1225
B158DRAFT_1226: B158DRAFT_1226 - ribonucleoside-diphosphate reductase, alpha subunit, at 1,263,657 to 1,266,533
_1226
Position (kb)
1262
1263
1264 Strain fitness (log2 ratio)
-2
-1
0
1 at 1261.313 kb on - strand at 1261.482 kb on + strand at 1261.495 kb on - strand at 1261.696 kb on - strand, within B158DRAFT_1224 at 1261.696 kb on - strand, within B158DRAFT_1224 at 1261.808 kb on - strand, within B158DRAFT_1224 at 1261.907 kb on - strand, within B158DRAFT_1224 at 1261.907 kb on - strand, within B158DRAFT_1224 at 1261.909 kb on + strand, within B158DRAFT_1224 at 1261.909 kb on - strand, within B158DRAFT_1224 at 1261.909 kb on - strand, within B158DRAFT_1224 at 1261.945 kb on + strand, within B158DRAFT_1224 at 1261.945 kb on + strand, within B158DRAFT_1224 at 1261.945 kb on + strand, within B158DRAFT_1224 at 1262.075 kb on + strand at 1262.083 kb on - strand at 1262.131 kb on + strand at 1262.132 kb on + strand at 1262.139 kb on - strand at 1262.140 kb on - strand at 1262.141 kb on + strand at 1262.151 kb on + strand at 1262.151 kb on + strand at 1262.159 kb on - strand at 1262.159 kb on - strand at 1262.263 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 20 mM remove 1,261,313 - -0.1 1,261,482 + -1.1 1,261,495 - -1.3 1,261,696 - B158DRAFT_1224 0.41 -1.2 1,261,696 - B158DRAFT_1224 0.41 +1.0 1,261,808 - B158DRAFT_1224 0.58 -1.0 1,261,907 - B158DRAFT_1224 0.74 -1.1 1,261,907 - B158DRAFT_1224 0.74 -2.3 1,261,909 + B158DRAFT_1224 0.74 -1.7 1,261,909 - B158DRAFT_1224 0.74 -1.0 1,261,909 - B158DRAFT_1224 0.74 +0.8 1,261,945 + B158DRAFT_1224 0.80 -0.7 1,261,945 + B158DRAFT_1224 0.80 +0.5 1,261,945 + B158DRAFT_1224 0.80 -1.5 1,262,075 + -0.6 1,262,083 - -0.2 1,262,131 + -1.1 1,262,132 + -0.7 1,262,139 - +0.1 1,262,140 - +0.5 1,262,141 + -0.5 1,262,151 + -0.6 1,262,151 + +0.1 1,262,159 - -2.5 1,262,159 - -1.8 1,262,263 - -1.2
Or see this region's nucleotide sequence