Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1225

Experiment: m.b. nitrite 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1223 and B158DRAFT_1224 are separated by 4 nucleotidesB158DRAFT_1224 and B158DRAFT_1225 are separated by 184 nucleotidesB158DRAFT_1225 and B158DRAFT_1226 are separated by 139 nucleotides B158DRAFT_1223: B158DRAFT_1223 - diguanylate cyclase/phosphodiesterase, at 1,259,916 to 1,261,430 _1223 B158DRAFT_1224: B158DRAFT_1224 - Nuclease-related domain., at 1,261,435 to 1,262,073 _1224 B158DRAFT_1225: B158DRAFT_1225 - Ribonucleotide reductase, beta subunit, at 1,262,258 to 1,263,517 _1225 B158DRAFT_1226: B158DRAFT_1226 - ribonucleoside-diphosphate reductase, alpha subunit, at 1,263,657 to 1,266,533 _1226 Position (kb) 1262 1263 1264Strain fitness (log2 ratio) -2 -1 0 1at 1261.313 kb on - strandat 1261.482 kb on + strandat 1261.495 kb on - strandat 1261.696 kb on - strand, within B158DRAFT_1224at 1261.696 kb on - strand, within B158DRAFT_1224at 1261.808 kb on - strand, within B158DRAFT_1224at 1261.907 kb on - strand, within B158DRAFT_1224at 1261.907 kb on - strand, within B158DRAFT_1224at 1261.909 kb on + strand, within B158DRAFT_1224at 1261.909 kb on - strand, within B158DRAFT_1224at 1261.909 kb on - strand, within B158DRAFT_1224at 1261.945 kb on + strand, within B158DRAFT_1224at 1261.945 kb on + strand, within B158DRAFT_1224at 1261.945 kb on + strand, within B158DRAFT_1224at 1262.075 kb on + strandat 1262.083 kb on - strandat 1262.131 kb on + strandat 1262.132 kb on + strandat 1262.139 kb on - strandat 1262.140 kb on - strandat 1262.141 kb on + strandat 1262.151 kb on + strandat 1262.151 kb on + strandat 1262.159 kb on - strandat 1262.159 kb on - strandat 1262.263 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrite 20 mM
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1,261,313 - -0.1
1,261,482 + -1.1
1,261,495 - -1.3
1,261,696 - B158DRAFT_1224 0.41 -1.2
1,261,696 - B158DRAFT_1224 0.41 +1.0
1,261,808 - B158DRAFT_1224 0.58 -1.0
1,261,907 - B158DRAFT_1224 0.74 -1.1
1,261,907 - B158DRAFT_1224 0.74 -2.3
1,261,909 + B158DRAFT_1224 0.74 -1.7
1,261,909 - B158DRAFT_1224 0.74 -1.0
1,261,909 - B158DRAFT_1224 0.74 +0.8
1,261,945 + B158DRAFT_1224 0.80 -0.7
1,261,945 + B158DRAFT_1224 0.80 +0.5
1,261,945 + B158DRAFT_1224 0.80 -1.5
1,262,075 + -0.6
1,262,083 - -0.2
1,262,131 + -1.1
1,262,132 + -0.7
1,262,139 - +0.1
1,262,140 - +0.5
1,262,141 + -0.5
1,262,151 + -0.6
1,262,151 + +0.1
1,262,159 - -2.5
1,262,159 - -1.8
1,262,263 - -1.2

Or see this region's nucleotide sequence