Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1148

Experiment: m.b. nitrite 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1146 and B158DRAFT_1147 are separated by 73 nucleotidesB158DRAFT_1147 and B158DRAFT_1148 are separated by 194 nucleotidesB158DRAFT_1148 and B158DRAFT_1149 are separated by 352 nucleotides B158DRAFT_1146: B158DRAFT_1146 - preQ(0) biosynthesis protein QueC, at 1,182,604 to 1,183,278 _1146 B158DRAFT_1147: B158DRAFT_1147 - hypothetical protein, at 1,183,352 to 1,183,792 _1147 B158DRAFT_1148: B158DRAFT_1148 - nucleoside diphosphate kinase (EC 2.7.4.6), at 1,183,987 to 1,184,418 _1148 B158DRAFT_1149: B158DRAFT_1149 - 23S rRNA m2A2503 methyltransferase, at 1,184,771 to 1,185,895 _1149 Position (kb) 1183 1184 1185Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1182.995 kb on - strand, within B158DRAFT_1146at 1183.000 kb on - strand, within B158DRAFT_1146at 1183.130 kb on + strand, within B158DRAFT_1146at 1183.130 kb on + strand, within B158DRAFT_1146at 1183.130 kb on + strand, within B158DRAFT_1146at 1183.130 kb on + strand, within B158DRAFT_1146at 1183.130 kb on + strand, within B158DRAFT_1146at 1183.130 kb on + strand, within B158DRAFT_1146at 1183.138 kb on - strand, within B158DRAFT_1146at 1183.138 kb on - strand, within B158DRAFT_1146at 1183.138 kb on - strand, within B158DRAFT_1146at 1183.138 kb on - strand, within B158DRAFT_1146at 1183.150 kb on - strand, within B158DRAFT_1146at 1183.176 kb on + strand, within B158DRAFT_1146at 1183.184 kb on - strand, within B158DRAFT_1146at 1183.194 kb on + strand, within B158DRAFT_1146at 1183.202 kb on - strand, within B158DRAFT_1146at 1183.202 kb on - strand, within B158DRAFT_1146at 1183.202 kb on - strand, within B158DRAFT_1146at 1183.204 kb on - strand, within B158DRAFT_1146at 1183.235 kb on + strandat 1183.235 kb on + strandat 1183.248 kb on + strandat 1183.256 kb on - strandat 1183.302 kb on + strandat 1183.331 kb on - strandat 1183.333 kb on - strandat 1183.335 kb on + strandat 1183.335 kb on + strandat 1183.335 kb on + strandat 1183.335 kb on + strandat 1183.335 kb on + strandat 1183.335 kb on + strandat 1183.335 kb on + strandat 1183.342 kb on + strandat 1183.343 kb on - strandat 1183.343 kb on - strandat 1183.350 kb on - strandat 1183.431 kb on + strand, within B158DRAFT_1147at 1183.431 kb on + strand, within B158DRAFT_1147at 1183.431 kb on + strand, within B158DRAFT_1147at 1183.431 kb on + strand, within B158DRAFT_1147at 1183.431 kb on - strand, within B158DRAFT_1147at 1183.433 kb on + strand, within B158DRAFT_1147at 1183.433 kb on + strand, within B158DRAFT_1147at 1183.439 kb on - strand, within B158DRAFT_1147at 1183.439 kb on - strand, within B158DRAFT_1147at 1183.439 kb on - strand, within B158DRAFT_1147at 1183.441 kb on - strand, within B158DRAFT_1147at 1183.441 kb on - strand, within B158DRAFT_1147at 1183.441 kb on - strand, within B158DRAFT_1147at 1183.442 kb on + strand, within B158DRAFT_1147at 1183.442 kb on + strand, within B158DRAFT_1147at 1183.442 kb on + strand, within B158DRAFT_1147at 1183.464 kb on + strand, within B158DRAFT_1147at 1183.464 kb on + strand, within B158DRAFT_1147at 1183.464 kb on + strand, within B158DRAFT_1147at 1183.472 kb on - strand, within B158DRAFT_1147at 1183.472 kb on - strand, within B158DRAFT_1147at 1183.472 kb on - strand, within B158DRAFT_1147at 1183.472 kb on - strand, within B158DRAFT_1147at 1183.472 kb on - strand, within B158DRAFT_1147at 1183.472 kb on - strand, within B158DRAFT_1147at 1183.485 kb on + strand, within B158DRAFT_1147at 1183.517 kb on - strand, within B158DRAFT_1147at 1183.535 kb on - strand, within B158DRAFT_1147at 1183.551 kb on + strand, within B158DRAFT_1147at 1183.559 kb on - strand, within B158DRAFT_1147at 1183.595 kb on - strand, within B158DRAFT_1147at 1183.605 kb on + strand, within B158DRAFT_1147at 1183.605 kb on - strand, within B158DRAFT_1147at 1183.607 kb on - strand, within B158DRAFT_1147at 1183.607 kb on - strand, within B158DRAFT_1147at 1183.651 kb on - strand, within B158DRAFT_1147at 1183.809 kb on + strandat 1183.812 kb on - strandat 1183.904 kb on + strandat 1184.077 kb on + strand, within B158DRAFT_1148at 1184.582 kb on + strandat 1184.582 kb on + strandat 1184.582 kb on + strandat 1184.582 kb on + strandat 1184.728 kb on + strandat 1184.753 kb on + strandat 1184.753 kb on + strandat 1184.753 kb on + strandat 1184.753 kb on + strandat 1184.761 kb on - strandat 1184.761 kb on - strandat 1184.761 kb on - strandat 1184.761 kb on - strandat 1184.771 kb on - strandat 1184.856 kb on + strandat 1184.867 kb on + strandat 1184.882 kb on + strandat 1184.885 kb on - strand, within B158DRAFT_1149at 1184.962 kb on + strand, within B158DRAFT_1149at 1184.970 kb on + strand, within B158DRAFT_1149at 1184.970 kb on + strand, within B158DRAFT_1149at 1184.988 kb on - strand, within B158DRAFT_1149at 1185.001 kb on + strand, within B158DRAFT_1149at 1185.001 kb on + strand, within B158DRAFT_1149at 1185.101 kb on + strand, within B158DRAFT_1149at 1185.190 kb on + strand, within B158DRAFT_1149at 1185.190 kb on + strand, within B158DRAFT_1149at 1185.190 kb on + strand, within B158DRAFT_1149at 1185.190 kb on + strand, within B158DRAFT_1149at 1185.190 kb on + strand, within B158DRAFT_1149at 1185.198 kb on - strand, within B158DRAFT_1149at 1185.198 kb on - strand, within B158DRAFT_1149at 1185.204 kb on + strand, within B158DRAFT_1149at 1185.231 kb on - strand, within B158DRAFT_1149at 1185.267 kb on - strand, within B158DRAFT_1149at 1185.301 kb on + strand, within B158DRAFT_1149at 1185.309 kb on - strand, within B158DRAFT_1149at 1185.343 kb on - strand, within B158DRAFT_1149at 1185.416 kb on + strand, within B158DRAFT_1149at 1185.416 kb on + strand, within B158DRAFT_1149

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrite 20 mM
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1,182,995 - B158DRAFT_1146 0.58 +1.6
1,183,000 - B158DRAFT_1146 0.59 +0.9
1,183,130 + B158DRAFT_1146 0.78 -1.4
1,183,130 + B158DRAFT_1146 0.78 +0.6
1,183,130 + B158DRAFT_1146 0.78 -0.5
1,183,130 + B158DRAFT_1146 0.78 +0.1
1,183,130 + B158DRAFT_1146 0.78 -0.2
1,183,130 + B158DRAFT_1146 0.78 -0.6
1,183,138 - B158DRAFT_1146 0.79 +1.0
1,183,138 - B158DRAFT_1146 0.79 -0.2
1,183,138 - B158DRAFT_1146 0.79 -1.0
1,183,138 - B158DRAFT_1146 0.79 -1.4
1,183,150 - B158DRAFT_1146 0.81 -1.5
1,183,176 + B158DRAFT_1146 0.85 -0.2
1,183,184 - B158DRAFT_1146 0.86 -1.2
1,183,194 + B158DRAFT_1146 0.87 -1.6
1,183,202 - B158DRAFT_1146 0.89 -0.8
1,183,202 - B158DRAFT_1146 0.89 -1.1
1,183,202 - B158DRAFT_1146 0.89 -0.8
1,183,204 - B158DRAFT_1146 0.89 +0.2
1,183,235 + -0.7
1,183,235 + -1.3
1,183,248 + -1.3
1,183,256 - +0.6
1,183,302 + +1.4
1,183,331 - +0.5
1,183,333 - -2.9
1,183,335 + -1.1
1,183,335 + -0.3
1,183,335 + -0.4
1,183,335 + -2.2
1,183,335 + -0.2
1,183,335 + -0.9
1,183,335 + +2.1
1,183,342 + -0.9
1,183,343 - -3.1
1,183,343 - +0.8
1,183,350 - -3.4
1,183,431 + B158DRAFT_1147 0.18 -0.4
1,183,431 + B158DRAFT_1147 0.18 +0.4
1,183,431 + B158DRAFT_1147 0.18 -0.4
1,183,431 + B158DRAFT_1147 0.18 -1.6
1,183,431 - B158DRAFT_1147 0.18 -0.2
1,183,433 + B158DRAFT_1147 0.18 -0.9
1,183,433 + B158DRAFT_1147 0.18 -1.2
1,183,439 - B158DRAFT_1147 0.20 +0.8
1,183,439 - B158DRAFT_1147 0.20 -1.1
1,183,439 - B158DRAFT_1147 0.20 -2.5
1,183,441 - B158DRAFT_1147 0.20 -0.4
1,183,441 - B158DRAFT_1147 0.20 -0.3
1,183,441 - B158DRAFT_1147 0.20 +0.0
1,183,442 + B158DRAFT_1147 0.20 +0.9
1,183,442 + B158DRAFT_1147 0.20 -0.4
1,183,442 + B158DRAFT_1147 0.20 -0.5
1,183,464 + B158DRAFT_1147 0.25 +0.0
1,183,464 + B158DRAFT_1147 0.25 +1.2
1,183,464 + B158DRAFT_1147 0.25 -0.9
1,183,472 - B158DRAFT_1147 0.27 +0.3
1,183,472 - B158DRAFT_1147 0.27 -0.4
1,183,472 - B158DRAFT_1147 0.27 -0.7
1,183,472 - B158DRAFT_1147 0.27 +0.2
1,183,472 - B158DRAFT_1147 0.27 -1.9
1,183,472 - B158DRAFT_1147 0.27 -1.3
1,183,485 + B158DRAFT_1147 0.30 +3.6
1,183,517 - B158DRAFT_1147 0.37 -1.6
1,183,535 - B158DRAFT_1147 0.41 -0.3
1,183,551 + B158DRAFT_1147 0.45 -0.1
1,183,559 - B158DRAFT_1147 0.47 -0.6
1,183,595 - B158DRAFT_1147 0.55 +0.2
1,183,605 + B158DRAFT_1147 0.57 -0.6
1,183,605 - B158DRAFT_1147 0.57 -1.0
1,183,607 - B158DRAFT_1147 0.58 -1.8
1,183,607 - B158DRAFT_1147 0.58 -1.6
1,183,651 - B158DRAFT_1147 0.68 +1.0
1,183,809 + -1.5
1,183,812 - -0.2
1,183,904 + -0.5
1,184,077 + B158DRAFT_1148 0.21 +1.0
1,184,582 + -0.3
1,184,582 + +0.2
1,184,582 + -1.3
1,184,582 + -0.9
1,184,728 + -0.5
1,184,753 + -2.5
1,184,753 + -0.7
1,184,753 + -1.8
1,184,753 + +1.6
1,184,761 - +0.2
1,184,761 - -1.0
1,184,761 - -1.9
1,184,761 - +0.3
1,184,771 - +0.2
1,184,856 + -0.0
1,184,867 + +0.8
1,184,882 + +0.5
1,184,885 - B158DRAFT_1149 0.10 -1.2
1,184,962 + B158DRAFT_1149 0.17 +0.5
1,184,970 + B158DRAFT_1149 0.18 -0.9
1,184,970 + B158DRAFT_1149 0.18 -0.0
1,184,988 - B158DRAFT_1149 0.19 +0.3
1,185,001 + B158DRAFT_1149 0.20 +1.5
1,185,001 + B158DRAFT_1149 0.20 +3.3
1,185,101 + B158DRAFT_1149 0.29 +0.1
1,185,190 + B158DRAFT_1149 0.37 -1.0
1,185,190 + B158DRAFT_1149 0.37 +0.4
1,185,190 + B158DRAFT_1149 0.37 -0.4
1,185,190 + B158DRAFT_1149 0.37 -0.4
1,185,190 + B158DRAFT_1149 0.37 +0.2
1,185,198 - B158DRAFT_1149 0.38 -1.7
1,185,198 - B158DRAFT_1149 0.38 -0.7
1,185,204 + B158DRAFT_1149 0.38 -0.2
1,185,231 - B158DRAFT_1149 0.41 +1.8
1,185,267 - B158DRAFT_1149 0.44 -0.6
1,185,301 + B158DRAFT_1149 0.47 +0.0
1,185,309 - B158DRAFT_1149 0.48 +1.0
1,185,343 - B158DRAFT_1149 0.51 -0.5
1,185,416 + B158DRAFT_1149 0.57 -0.6
1,185,416 + B158DRAFT_1149 0.57 -2.2

Or see this region's nucleotide sequence