Experiment: m.b. nitrite 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_1091 and B158DRAFT_1092 overlap by 4 nucleotides B158DRAFT_1092 and B158DRAFT_1093 are separated by 68 nucleotides B158DRAFT_1093 and B158DRAFT_1094 are separated by 27 nucleotides B158DRAFT_1094 and B158DRAFT_1095 are separated by 144 nucleotides
B158DRAFT_1091: B158DRAFT_1091 - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.-), at 1,129,096 to 1,129,566
_1091
B158DRAFT_1092: B158DRAFT_1092 - acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase (EC 2.3.1.129), at 1,129,563 to 1,130,321
_1092
B158DRAFT_1093: B158DRAFT_1093 - lipid-A-disaccharide synthase (EC 2.4.1.182), at 1,130,390 to 1,131,586
_1093
B158DRAFT_1094: B158DRAFT_1094 - RNase HII (EC 3.1.26.4), at 1,131,614 to 1,132,189
_1094
B158DRAFT_1095: B158DRAFT_1095 - DNA-directed DNA polymerase III (polc), at 1,132,334 to 1,135,819
_1095
Position (kb)
1130
1131
1132 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1130.325 kb on + strand at 1130.348 kb on + strand at 1130.348 kb on + strand at 1130.348 kb on + strand at 1130.381 kb on + strand at 1131.552 kb on + strand at 1131.565 kb on - strand at 1131.565 kb on - strand at 1131.639 kb on + strand at 1131.649 kb on + strand at 1131.687 kb on - strand, within B158DRAFT_1094 at 1131.777 kb on + strand, within B158DRAFT_1094 at 1131.791 kb on + strand, within B158DRAFT_1094 at 1131.799 kb on - strand, within B158DRAFT_1094 at 1131.801 kb on + strand, within B158DRAFT_1094 at 1131.900 kb on + strand, within B158DRAFT_1094 at 1131.908 kb on - strand, within B158DRAFT_1094 at 1131.928 kb on + strand, within B158DRAFT_1094 at 1131.928 kb on + strand, within B158DRAFT_1094 at 1131.933 kb on + strand, within B158DRAFT_1094 at 1131.936 kb on - strand, within B158DRAFT_1094 at 1131.936 kb on - strand, within B158DRAFT_1094 at 1131.941 kb on - strand, within B158DRAFT_1094 at 1131.941 kb on - strand, within B158DRAFT_1094 at 1131.946 kb on - strand, within B158DRAFT_1094 at 1131.946 kb on - strand, within B158DRAFT_1094 at 1131.964 kb on + strand, within B158DRAFT_1094 at 1131.964 kb on + strand, within B158DRAFT_1094 at 1131.971 kb on + strand, within B158DRAFT_1094 at 1131.972 kb on - strand, within B158DRAFT_1094 at 1131.999 kb on - strand, within B158DRAFT_1094 at 1132.026 kb on - strand, within B158DRAFT_1094 at 1132.037 kb on - strand, within B158DRAFT_1094 at 1132.049 kb on + strand, within B158DRAFT_1094 at 1132.049 kb on + strand, within B158DRAFT_1094 at 1132.054 kb on + strand, within B158DRAFT_1094 at 1132.054 kb on + strand, within B158DRAFT_1094 at 1132.054 kb on + strand, within B158DRAFT_1094 at 1132.081 kb on + strand, within B158DRAFT_1094 at 1132.081 kb on + strand, within B158DRAFT_1094 at 1132.081 kb on + strand, within B158DRAFT_1094 at 1132.081 kb on + strand, within B158DRAFT_1094 at 1132.081 kb on + strand, within B158DRAFT_1094 at 1132.081 kb on + strand, within B158DRAFT_1094 at 1132.089 kb on - strand, within B158DRAFT_1094 at 1132.089 kb on - strand, within B158DRAFT_1094 at 1132.089 kb on - strand, within B158DRAFT_1094 at 1132.089 kb on - strand, within B158DRAFT_1094 at 1132.089 kb on - strand, within B158DRAFT_1094 at 1132.089 kb on - strand, within B158DRAFT_1094 at 1132.089 kb on - strand, within B158DRAFT_1094 at 1132.089 kb on - strand, within B158DRAFT_1094 at 1132.089 kb on - strand, within B158DRAFT_1094 at 1132.095 kb on - strand, within B158DRAFT_1094
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 20 mM remove 1,130,325 + +0.4 1,130,348 + +0.6 1,130,348 + -0.4 1,130,348 + -0.8 1,130,381 + +1.7 1,131,552 + -0.4 1,131,565 - -0.2 1,131,565 - +3.3 1,131,639 + -0.3 1,131,649 + -1.7 1,131,687 - B158DRAFT_1094 0.13 -0.2 1,131,777 + B158DRAFT_1094 0.28 -1.0 1,131,791 + B158DRAFT_1094 0.31 -0.7 1,131,799 - B158DRAFT_1094 0.32 +0.5 1,131,801 + B158DRAFT_1094 0.32 -0.6 1,131,900 + B158DRAFT_1094 0.50 -1.5 1,131,908 - B158DRAFT_1094 0.51 -0.6 1,131,928 + B158DRAFT_1094 0.55 -0.8 1,131,928 + B158DRAFT_1094 0.55 -2.4 1,131,933 + B158DRAFT_1094 0.55 +2.0 1,131,936 - B158DRAFT_1094 0.56 -1.2 1,131,936 - B158DRAFT_1094 0.56 +0.9 1,131,941 - B158DRAFT_1094 0.57 -1.6 1,131,941 - B158DRAFT_1094 0.57 -1.0 1,131,946 - B158DRAFT_1094 0.58 -0.1 1,131,946 - B158DRAFT_1094 0.58 -1.0 1,131,964 + B158DRAFT_1094 0.61 -1.7 1,131,964 + B158DRAFT_1094 0.61 +0.2 1,131,971 + B158DRAFT_1094 0.62 -0.6 1,131,972 - B158DRAFT_1094 0.62 -0.3 1,131,999 - B158DRAFT_1094 0.67 +0.9 1,132,026 - B158DRAFT_1094 0.72 +0.6 1,132,037 - B158DRAFT_1094 0.73 +0.1 1,132,049 + B158DRAFT_1094 0.76 -1.8 1,132,049 + B158DRAFT_1094 0.76 -1.3 1,132,054 + B158DRAFT_1094 0.76 -1.4 1,132,054 + B158DRAFT_1094 0.76 -1.4 1,132,054 + B158DRAFT_1094 0.76 +0.1 1,132,081 + B158DRAFT_1094 0.81 +0.8 1,132,081 + B158DRAFT_1094 0.81 -1.0 1,132,081 + B158DRAFT_1094 0.81 -0.4 1,132,081 + B158DRAFT_1094 0.81 -0.9 1,132,081 + B158DRAFT_1094 0.81 -0.1 1,132,081 + B158DRAFT_1094 0.81 -0.9 1,132,089 - B158DRAFT_1094 0.82 +0.1 1,132,089 - B158DRAFT_1094 0.82 -1.2 1,132,089 - B158DRAFT_1094 0.82 -0.7 1,132,089 - B158DRAFT_1094 0.82 -0.6 1,132,089 - B158DRAFT_1094 0.82 -2.5 1,132,089 - B158DRAFT_1094 0.82 -1.1 1,132,089 - B158DRAFT_1094 0.82 -0.6 1,132,089 - B158DRAFT_1094 0.82 +0.1 1,132,089 - B158DRAFT_1094 0.82 +1.6 1,132,095 - B158DRAFT_1094 0.84 -1.2
Or see this region's nucleotide sequence