Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1093

Experiment: m.b. nitrite 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1091 and B158DRAFT_1092 overlap by 4 nucleotidesB158DRAFT_1092 and B158DRAFT_1093 are separated by 68 nucleotidesB158DRAFT_1093 and B158DRAFT_1094 are separated by 27 nucleotidesB158DRAFT_1094 and B158DRAFT_1095 are separated by 144 nucleotides B158DRAFT_1091: B158DRAFT_1091 - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.-), at 1,129,096 to 1,129,566 _1091 B158DRAFT_1092: B158DRAFT_1092 - acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase (EC 2.3.1.129), at 1,129,563 to 1,130,321 _1092 B158DRAFT_1093: B158DRAFT_1093 - lipid-A-disaccharide synthase (EC 2.4.1.182), at 1,130,390 to 1,131,586 _1093 B158DRAFT_1094: B158DRAFT_1094 - RNase HII (EC 3.1.26.4), at 1,131,614 to 1,132,189 _1094 B158DRAFT_1095: B158DRAFT_1095 - DNA-directed DNA polymerase III (polc), at 1,132,334 to 1,135,819 _1095 Position (kb) 1130 1131 1132Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1130.325 kb on + strandat 1130.348 kb on + strandat 1130.348 kb on + strandat 1130.348 kb on + strandat 1130.381 kb on + strandat 1131.552 kb on + strandat 1131.565 kb on - strandat 1131.565 kb on - strandat 1131.639 kb on + strandat 1131.649 kb on + strandat 1131.687 kb on - strand, within B158DRAFT_1094at 1131.777 kb on + strand, within B158DRAFT_1094at 1131.791 kb on + strand, within B158DRAFT_1094at 1131.799 kb on - strand, within B158DRAFT_1094at 1131.801 kb on + strand, within B158DRAFT_1094at 1131.900 kb on + strand, within B158DRAFT_1094at 1131.908 kb on - strand, within B158DRAFT_1094at 1131.928 kb on + strand, within B158DRAFT_1094at 1131.928 kb on + strand, within B158DRAFT_1094at 1131.933 kb on + strand, within B158DRAFT_1094at 1131.936 kb on - strand, within B158DRAFT_1094at 1131.936 kb on - strand, within B158DRAFT_1094at 1131.941 kb on - strand, within B158DRAFT_1094at 1131.941 kb on - strand, within B158DRAFT_1094at 1131.946 kb on - strand, within B158DRAFT_1094at 1131.946 kb on - strand, within B158DRAFT_1094at 1131.964 kb on + strand, within B158DRAFT_1094at 1131.964 kb on + strand, within B158DRAFT_1094at 1131.971 kb on + strand, within B158DRAFT_1094at 1131.972 kb on - strand, within B158DRAFT_1094at 1131.999 kb on - strand, within B158DRAFT_1094at 1132.026 kb on - strand, within B158DRAFT_1094at 1132.037 kb on - strand, within B158DRAFT_1094at 1132.049 kb on + strand, within B158DRAFT_1094at 1132.049 kb on + strand, within B158DRAFT_1094at 1132.054 kb on + strand, within B158DRAFT_1094at 1132.054 kb on + strand, within B158DRAFT_1094at 1132.054 kb on + strand, within B158DRAFT_1094at 1132.081 kb on + strand, within B158DRAFT_1094at 1132.081 kb on + strand, within B158DRAFT_1094at 1132.081 kb on + strand, within B158DRAFT_1094at 1132.081 kb on + strand, within B158DRAFT_1094at 1132.081 kb on + strand, within B158DRAFT_1094at 1132.081 kb on + strand, within B158DRAFT_1094at 1132.089 kb on - strand, within B158DRAFT_1094at 1132.089 kb on - strand, within B158DRAFT_1094at 1132.089 kb on - strand, within B158DRAFT_1094at 1132.089 kb on - strand, within B158DRAFT_1094at 1132.089 kb on - strand, within B158DRAFT_1094at 1132.089 kb on - strand, within B158DRAFT_1094at 1132.089 kb on - strand, within B158DRAFT_1094at 1132.089 kb on - strand, within B158DRAFT_1094at 1132.089 kb on - strand, within B158DRAFT_1094at 1132.095 kb on - strand, within B158DRAFT_1094

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrite 20 mM
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1,130,325 + +0.4
1,130,348 + +0.6
1,130,348 + -0.4
1,130,348 + -0.8
1,130,381 + +1.7
1,131,552 + -0.4
1,131,565 - -0.2
1,131,565 - +3.3
1,131,639 + -0.3
1,131,649 + -1.7
1,131,687 - B158DRAFT_1094 0.13 -0.2
1,131,777 + B158DRAFT_1094 0.28 -1.0
1,131,791 + B158DRAFT_1094 0.31 -0.7
1,131,799 - B158DRAFT_1094 0.32 +0.5
1,131,801 + B158DRAFT_1094 0.32 -0.6
1,131,900 + B158DRAFT_1094 0.50 -1.5
1,131,908 - B158DRAFT_1094 0.51 -0.6
1,131,928 + B158DRAFT_1094 0.55 -0.8
1,131,928 + B158DRAFT_1094 0.55 -2.4
1,131,933 + B158DRAFT_1094 0.55 +2.0
1,131,936 - B158DRAFT_1094 0.56 -1.2
1,131,936 - B158DRAFT_1094 0.56 +0.9
1,131,941 - B158DRAFT_1094 0.57 -1.6
1,131,941 - B158DRAFT_1094 0.57 -1.0
1,131,946 - B158DRAFT_1094 0.58 -0.1
1,131,946 - B158DRAFT_1094 0.58 -1.0
1,131,964 + B158DRAFT_1094 0.61 -1.7
1,131,964 + B158DRAFT_1094 0.61 +0.2
1,131,971 + B158DRAFT_1094 0.62 -0.6
1,131,972 - B158DRAFT_1094 0.62 -0.3
1,131,999 - B158DRAFT_1094 0.67 +0.9
1,132,026 - B158DRAFT_1094 0.72 +0.6
1,132,037 - B158DRAFT_1094 0.73 +0.1
1,132,049 + B158DRAFT_1094 0.76 -1.8
1,132,049 + B158DRAFT_1094 0.76 -1.3
1,132,054 + B158DRAFT_1094 0.76 -1.4
1,132,054 + B158DRAFT_1094 0.76 -1.4
1,132,054 + B158DRAFT_1094 0.76 +0.1
1,132,081 + B158DRAFT_1094 0.81 +0.8
1,132,081 + B158DRAFT_1094 0.81 -1.0
1,132,081 + B158DRAFT_1094 0.81 -0.4
1,132,081 + B158DRAFT_1094 0.81 -0.9
1,132,081 + B158DRAFT_1094 0.81 -0.1
1,132,081 + B158DRAFT_1094 0.81 -0.9
1,132,089 - B158DRAFT_1094 0.82 +0.1
1,132,089 - B158DRAFT_1094 0.82 -1.2
1,132,089 - B158DRAFT_1094 0.82 -0.7
1,132,089 - B158DRAFT_1094 0.82 -0.6
1,132,089 - B158DRAFT_1094 0.82 -2.5
1,132,089 - B158DRAFT_1094 0.82 -1.1
1,132,089 - B158DRAFT_1094 0.82 -0.6
1,132,089 - B158DRAFT_1094 0.82 +0.1
1,132,089 - B158DRAFT_1094 0.82 +1.6
1,132,095 - B158DRAFT_1094 0.84 -1.2

Or see this region's nucleotide sequence