Experiment: m.b. nitrite 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_0799 and B158DRAFT_0800 are separated by 35 nucleotides B158DRAFT_0800 and B158DRAFT_0801 are separated by 74 nucleotides B158DRAFT_0801 and B158DRAFT_0802 are separated by 132 nucleotides
B158DRAFT_0799: B158DRAFT_0799 - aconitate hydratase 1, at 803,154 to 805,859
_0799
B158DRAFT_0800: B158DRAFT_0800 - Major Facilitator Superfamily., at 805,895 to 807,262
_0800
B158DRAFT_0801: B158DRAFT_0801 - hypothetical protein, at 807,337 to 807,759
_0801
B158DRAFT_0802: B158DRAFT_0802 - Arabinose efflux permease, at 807,892 to 809,091
_0802
Position (kb) 805
806
807
808 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 804.969 kb on + strand, within B158DRAFT_0799 at 804.969 kb on + strand, within B158DRAFT_0799 at 804.979 kb on - strand, within B158DRAFT_0799 at 805.036 kb on + strand, within B158DRAFT_0799 at 805.044 kb on - strand, within B158DRAFT_0799 at 805.106 kb on - strand, within B158DRAFT_0799 at 805.164 kb on + strand, within B158DRAFT_0799 at 805.248 kb on - strand, within B158DRAFT_0799 at 805.253 kb on + strand, within B158DRAFT_0799 at 805.253 kb on + strand, within B158DRAFT_0799 at 805.253 kb on + strand, within B158DRAFT_0799 at 805.261 kb on - strand, within B158DRAFT_0799 at 805.277 kb on + strand, within B158DRAFT_0799 at 805.285 kb on - strand, within B158DRAFT_0799 at 805.285 kb on - strand, within B158DRAFT_0799 at 805.285 kb on - strand, within B158DRAFT_0799 at 805.296 kb on + strand, within B158DRAFT_0799 at 805.320 kb on - strand, within B158DRAFT_0799 at 805.325 kb on + strand, within B158DRAFT_0799 at 805.408 kb on - strand, within B158DRAFT_0799 at 805.455 kb on - strand, within B158DRAFT_0799 at 805.463 kb on - strand, within B158DRAFT_0799 at 805.564 kb on + strand, within B158DRAFT_0799 at 805.564 kb on + strand, within B158DRAFT_0799 at 805.599 kb on - strand at 805.613 kb on + strand at 805.651 kb on - strand at 805.776 kb on - strand at 805.853 kb on + strand at 805.971 kb on + strand at 805.971 kb on + strand at 805.979 kb on - strand at 806.047 kb on - strand, within B158DRAFT_0800 at 806.102 kb on - strand, within B158DRAFT_0800 at 806.222 kb on + strand, within B158DRAFT_0800 at 806.242 kb on + strand, within B158DRAFT_0800 at 806.259 kb on + strand, within B158DRAFT_0800 at 806.336 kb on + strand, within B158DRAFT_0800 at 806.336 kb on + strand, within B158DRAFT_0800 at 806.336 kb on + strand, within B158DRAFT_0800 at 806.336 kb on + strand, within B158DRAFT_0800 at 806.355 kb on + strand, within B158DRAFT_0800 at 806.355 kb on + strand, within B158DRAFT_0800 at 806.363 kb on + strand, within B158DRAFT_0800 at 806.374 kb on + strand, within B158DRAFT_0800 at 806.382 kb on - strand, within B158DRAFT_0800 at 806.387 kb on - strand, within B158DRAFT_0800 at 806.439 kb on + strand, within B158DRAFT_0800 at 806.439 kb on + strand, within B158DRAFT_0800 at 806.444 kb on + strand, within B158DRAFT_0800 at 806.447 kb on - strand, within B158DRAFT_0800 at 806.447 kb on - strand, within B158DRAFT_0800 at 806.558 kb on + strand, within B158DRAFT_0800 at 806.626 kb on - strand, within B158DRAFT_0800 at 806.665 kb on + strand, within B158DRAFT_0800 at 806.673 kb on - strand, within B158DRAFT_0800 at 806.731 kb on - strand, within B158DRAFT_0800 at 806.778 kb on + strand, within B158DRAFT_0800 at 806.786 kb on - strand, within B158DRAFT_0800 at 806.786 kb on - strand, within B158DRAFT_0800 at 806.814 kb on + strand, within B158DRAFT_0800 at 806.814 kb on + strand, within B158DRAFT_0800 at 806.815 kb on + strand, within B158DRAFT_0800 at 806.840 kb on + strand, within B158DRAFT_0800 at 806.840 kb on + strand, within B158DRAFT_0800 at 806.840 kb on + strand, within B158DRAFT_0800 at 806.848 kb on - strand, within B158DRAFT_0800 at 806.868 kb on - strand, within B158DRAFT_0800 at 806.903 kb on + strand, within B158DRAFT_0800 at 806.911 kb on - strand, within B158DRAFT_0800 at 806.949 kb on - strand, within B158DRAFT_0800 at 806.988 kb on - strand, within B158DRAFT_0800 at 806.998 kb on - strand, within B158DRAFT_0800 at 807.033 kb on + strand, within B158DRAFT_0800 at 807.033 kb on + strand, within B158DRAFT_0800 at 807.041 kb on - strand, within B158DRAFT_0800 at 807.041 kb on - strand, within B158DRAFT_0800 at 807.041 kb on - strand, within B158DRAFT_0800 at 807.082 kb on + strand, within B158DRAFT_0800 at 807.082 kb on + strand, within B158DRAFT_0800 at 807.090 kb on - strand, within B158DRAFT_0800 at 807.093 kb on + strand, within B158DRAFT_0800 at 807.100 kb on - strand, within B158DRAFT_0800 at 807.100 kb on - strand, within B158DRAFT_0800 at 807.114 kb on - strand, within B158DRAFT_0800 at 807.114 kb on - strand, within B158DRAFT_0800 at 807.200 kb on + strand at 807.208 kb on - strand at 807.233 kb on - strand at 807.233 kb on - strand at 807.237 kb on + strand at 807.238 kb on - strand at 807.265 kb on - strand at 807.461 kb on - strand, within B158DRAFT_0801 at 807.477 kb on + strand, within B158DRAFT_0801 at 807.477 kb on + strand, within B158DRAFT_0801 at 807.477 kb on + strand, within B158DRAFT_0801 at 807.477 kb on + strand, within B158DRAFT_0801 at 807.477 kb on + strand, within B158DRAFT_0801 at 807.485 kb on - strand, within B158DRAFT_0801 at 807.485 kb on - strand, within B158DRAFT_0801 at 807.485 kb on - strand, within B158DRAFT_0801 at 807.492 kb on + strand, within B158DRAFT_0801 at 807.492 kb on + strand, within B158DRAFT_0801 at 807.492 kb on + strand, within B158DRAFT_0801 at 807.492 kb on + strand, within B158DRAFT_0801 at 807.500 kb on - strand, within B158DRAFT_0801 at 807.500 kb on - strand, within B158DRAFT_0801 at 807.500 kb on - strand, within B158DRAFT_0801 at 807.500 kb on - strand, within B158DRAFT_0801 at 807.500 kb on - strand, within B158DRAFT_0801 at 807.500 kb on - strand, within B158DRAFT_0801 at 807.502 kb on - strand, within B158DRAFT_0801 at 807.535 kb on + strand, within B158DRAFT_0801 at 807.535 kb on + strand, within B158DRAFT_0801 at 807.535 kb on + strand, within B158DRAFT_0801 at 807.535 kb on + strand, within B158DRAFT_0801 at 807.543 kb on - strand, within B158DRAFT_0801 at 807.543 kb on - strand, within B158DRAFT_0801 at 807.543 kb on - strand, within B158DRAFT_0801 at 807.543 kb on - strand, within B158DRAFT_0801 at 807.616 kb on - strand, within B158DRAFT_0801 at 807.618 kb on + strand, within B158DRAFT_0801 at 807.626 kb on - strand, within B158DRAFT_0801 at 807.688 kb on + strand, within B158DRAFT_0801 at 807.688 kb on + strand, within B158DRAFT_0801 at 807.688 kb on + strand, within B158DRAFT_0801 at 807.746 kb on - strand at 807.820 kb on + strand at 807.828 kb on - strand at 807.867 kb on + strand at 807.883 kb on - strand at 808.047 kb on + strand, within B158DRAFT_0802 at 808.050 kb on - strand, within B158DRAFT_0802 at 808.055 kb on - strand, within B158DRAFT_0802 at 808.055 kb on - strand, within B158DRAFT_0802 at 808.081 kb on + strand, within B158DRAFT_0802 at 808.089 kb on - strand, within B158DRAFT_0802 at 808.156 kb on + strand, within B158DRAFT_0802 at 808.156 kb on + strand, within B158DRAFT_0802 at 808.174 kb on - strand, within B158DRAFT_0802
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 20 mM remove 804,969 + B158DRAFT_0799 0.67 -1.1 804,969 + B158DRAFT_0799 0.67 -0.9 804,979 - B158DRAFT_0799 0.67 -2.3 805,036 + B158DRAFT_0799 0.70 -0.5 805,044 - B158DRAFT_0799 0.70 -2.1 805,106 - B158DRAFT_0799 0.72 -1.3 805,164 + B158DRAFT_0799 0.74 +0.2 805,248 - B158DRAFT_0799 0.77 -2.2 805,253 + B158DRAFT_0799 0.78 -0.0 805,253 + B158DRAFT_0799 0.78 +0.9 805,253 + B158DRAFT_0799 0.78 -0.5 805,261 - B158DRAFT_0799 0.78 -2.9 805,277 + B158DRAFT_0799 0.78 -0.3 805,285 - B158DRAFT_0799 0.79 -0.3 805,285 - B158DRAFT_0799 0.79 -1.3 805,285 - B158DRAFT_0799 0.79 -0.3 805,296 + B158DRAFT_0799 0.79 -1.5 805,320 - B158DRAFT_0799 0.80 -0.2 805,325 + B158DRAFT_0799 0.80 +0.0 805,408 - B158DRAFT_0799 0.83 -0.6 805,455 - B158DRAFT_0799 0.85 +0.8 805,463 - B158DRAFT_0799 0.85 +0.6 805,564 + B158DRAFT_0799 0.89 +0.3 805,564 + B158DRAFT_0799 0.89 +0.2 805,599 - -0.6 805,613 + -0.4 805,651 - -0.5 805,776 - -0.4 805,853 + -2.1 805,971 + -0.8 805,971 + -1.7 805,979 - -0.3 806,047 - B158DRAFT_0800 0.11 -1.1 806,102 - B158DRAFT_0800 0.15 -1.1 806,222 + B158DRAFT_0800 0.24 -1.3 806,242 + B158DRAFT_0800 0.25 -1.0 806,259 + B158DRAFT_0800 0.27 -1.4 806,336 + B158DRAFT_0800 0.32 -1.1 806,336 + B158DRAFT_0800 0.32 -0.1 806,336 + B158DRAFT_0800 0.32 -0.8 806,336 + B158DRAFT_0800 0.32 +0.8 806,355 + B158DRAFT_0800 0.34 +0.9 806,355 + B158DRAFT_0800 0.34 +0.6 806,363 + B158DRAFT_0800 0.34 -0.0 806,374 + B158DRAFT_0800 0.35 -1.4 806,382 - B158DRAFT_0800 0.36 -1.3 806,387 - B158DRAFT_0800 0.36 +0.9 806,439 + B158DRAFT_0800 0.40 -2.8 806,439 + B158DRAFT_0800 0.40 -0.3 806,444 + B158DRAFT_0800 0.40 -2.7 806,447 - B158DRAFT_0800 0.40 +0.6 806,447 - B158DRAFT_0800 0.40 +0.2 806,558 + B158DRAFT_0800 0.48 -1.2 806,626 - B158DRAFT_0800 0.53 -0.6 806,665 + B158DRAFT_0800 0.56 -1.0 806,673 - B158DRAFT_0800 0.57 -0.5 806,731 - B158DRAFT_0800 0.61 +1.1 806,778 + B158DRAFT_0800 0.65 -0.4 806,786 - B158DRAFT_0800 0.65 -0.4 806,786 - B158DRAFT_0800 0.65 +0.5 806,814 + B158DRAFT_0800 0.67 +0.4 806,814 + B158DRAFT_0800 0.67 -1.4 806,815 + B158DRAFT_0800 0.67 -0.4 806,840 + B158DRAFT_0800 0.69 -0.1 806,840 + B158DRAFT_0800 0.69 -0.8 806,840 + B158DRAFT_0800 0.69 -2.1 806,848 - B158DRAFT_0800 0.70 -1.9 806,868 - B158DRAFT_0800 0.71 -0.9 806,903 + B158DRAFT_0800 0.74 -1.9 806,911 - B158DRAFT_0800 0.74 -1.7 806,949 - B158DRAFT_0800 0.77 -0.8 806,988 - B158DRAFT_0800 0.80 -1.2 806,998 - B158DRAFT_0800 0.81 -2.4 807,033 + B158DRAFT_0800 0.83 -1.9 807,033 + B158DRAFT_0800 0.83 -0.4 807,041 - B158DRAFT_0800 0.84 -0.9 807,041 - B158DRAFT_0800 0.84 -2.5 807,041 - B158DRAFT_0800 0.84 +1.3 807,082 + B158DRAFT_0800 0.87 -0.5 807,082 + B158DRAFT_0800 0.87 -0.3 807,090 - B158DRAFT_0800 0.87 -1.5 807,093 + B158DRAFT_0800 0.88 -0.2 807,100 - B158DRAFT_0800 0.88 -0.7 807,100 - B158DRAFT_0800 0.88 -1.5 807,114 - B158DRAFT_0800 0.89 -0.7 807,114 - B158DRAFT_0800 0.89 -0.1 807,200 + -2.4 807,208 - +0.9 807,233 - +0.7 807,233 - -1.0 807,237 + +1.1 807,238 - -0.1 807,265 - -0.1 807,461 - B158DRAFT_0801 0.29 -0.5 807,477 + B158DRAFT_0801 0.33 +0.9 807,477 + B158DRAFT_0801 0.33 +0.6 807,477 + B158DRAFT_0801 0.33 +0.5 807,477 + B158DRAFT_0801 0.33 -1.7 807,477 + B158DRAFT_0801 0.33 +0.2 807,485 - B158DRAFT_0801 0.35 -0.9 807,485 - B158DRAFT_0801 0.35 -1.6 807,485 - B158DRAFT_0801 0.35 -0.2 807,492 + B158DRAFT_0801 0.37 -1.5 807,492 + B158DRAFT_0801 0.37 +0.2 807,492 + B158DRAFT_0801 0.37 -1.2 807,492 + B158DRAFT_0801 0.37 -0.0 807,500 - B158DRAFT_0801 0.39 -1.4 807,500 - B158DRAFT_0801 0.39 -0.3 807,500 - B158DRAFT_0801 0.39 -1.7 807,500 - B158DRAFT_0801 0.39 +0.0 807,500 - B158DRAFT_0801 0.39 -2.0 807,500 - B158DRAFT_0801 0.39 -1.0 807,502 - B158DRAFT_0801 0.39 -0.5 807,535 + B158DRAFT_0801 0.47 -1.6 807,535 + B158DRAFT_0801 0.47 -0.9 807,535 + B158DRAFT_0801 0.47 -1.2 807,535 + B158DRAFT_0801 0.47 -0.4 807,543 - B158DRAFT_0801 0.49 -0.1 807,543 - B158DRAFT_0801 0.49 +0.4 807,543 - B158DRAFT_0801 0.49 -0.1 807,543 - B158DRAFT_0801 0.49 +1.4 807,616 - B158DRAFT_0801 0.66 +0.5 807,618 + B158DRAFT_0801 0.66 -2.1 807,626 - B158DRAFT_0801 0.68 +0.2 807,688 + B158DRAFT_0801 0.83 +1.4 807,688 + B158DRAFT_0801 0.83 -2.5 807,688 + B158DRAFT_0801 0.83 +3.4 807,746 - +0.3 807,820 + -0.7 807,828 - -1.4 807,867 + -2.6 807,883 - -0.6 808,047 + B158DRAFT_0802 0.13 +1.0 808,050 - B158DRAFT_0802 0.13 -0.5 808,055 - B158DRAFT_0802 0.14 +0.9 808,055 - B158DRAFT_0802 0.14 +0.6 808,081 + B158DRAFT_0802 0.16 +0.0 808,089 - B158DRAFT_0802 0.16 -2.1 808,156 + B158DRAFT_0802 0.22 -0.1 808,156 + B158DRAFT_0802 0.22 +0.1 808,174 - B158DRAFT_0802 0.23 +0.1
Or see this region's nucleotide sequence