Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0704

Experiment: m.b. nitrite 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_0703 and B158DRAFT_0704 are separated by 197 nucleotidesB158DRAFT_0704 and B158DRAFT_0705 are separated by 28 nucleotides B158DRAFT_0703: B158DRAFT_0703 - hypothetical protein, at 702,677 to 704,278 _0703 B158DRAFT_0704: B158DRAFT_0704 - C-terminal peptidase (prc), at 704,476 to 705,723 _0704 B158DRAFT_0705: B158DRAFT_0705 - Membrane-bound metallopeptidase, at 705,752 to 706,927 _0705 Position (kb) 704 705 706Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7at 703.590 kb on - strand, within B158DRAFT_0703at 703.631 kb on + strand, within B158DRAFT_0703at 703.658 kb on - strand, within B158DRAFT_0703at 703.702 kb on + strand, within B158DRAFT_0703at 703.797 kb on - strand, within B158DRAFT_0703at 703.811 kb on + strand, within B158DRAFT_0703at 703.821 kb on + strand, within B158DRAFT_0703at 703.821 kb on + strand, within B158DRAFT_0703at 703.821 kb on + strand, within B158DRAFT_0703at 703.829 kb on - strand, within B158DRAFT_0703at 703.919 kb on + strand, within B158DRAFT_0703at 703.922 kb on - strand, within B158DRAFT_0703at 704.003 kb on - strand, within B158DRAFT_0703at 704.005 kb on + strand, within B158DRAFT_0703at 704.040 kb on + strand, within B158DRAFT_0703at 704.042 kb on - strand, within B158DRAFT_0703at 704.048 kb on - strand, within B158DRAFT_0703at 704.048 kb on - strand, within B158DRAFT_0703at 704.110 kb on + strand, within B158DRAFT_0703at 704.134 kb on + strandat 704.151 kb on - strandat 704.181 kb on + strandat 704.181 kb on + strandat 704.181 kb on + strandat 704.182 kb on + strandat 704.182 kb on + strandat 704.182 kb on + strandat 704.182 kb on + strandat 704.182 kb on + strandat 704.182 kb on + strandat 704.182 kb on + strandat 704.182 kb on + strandat 704.182 kb on + strandat 704.190 kb on - strandat 704.190 kb on - strandat 704.190 kb on - strandat 704.190 kb on - strandat 704.190 kb on - strandat 704.190 kb on - strandat 704.190 kb on - strandat 704.190 kb on - strandat 704.190 kb on - strandat 704.190 kb on - strandat 704.195 kb on - strandat 704.197 kb on + strandat 704.197 kb on + strandat 704.200 kb on - strandat 704.205 kb on - strandat 704.272 kb on + strandat 704.293 kb on - strandat 704.346 kb on - strandat 704.394 kb on - strandat 704.522 kb on + strandat 704.598 kb on + strandat 704.598 kb on + strandat 704.598 kb on + strandat 704.606 kb on - strand, within B158DRAFT_0704at 704.606 kb on - strand, within B158DRAFT_0704at 704.626 kb on + strand, within B158DRAFT_0704at 704.671 kb on + strand, within B158DRAFT_0704at 704.687 kb on - strand, within B158DRAFT_0704at 704.733 kb on - strand, within B158DRAFT_0704at 704.734 kb on - strand, within B158DRAFT_0704at 704.744 kb on + strand, within B158DRAFT_0704at 704.749 kb on + strand, within B158DRAFT_0704at 704.749 kb on + strand, within B158DRAFT_0704at 704.757 kb on - strand, within B158DRAFT_0704at 704.890 kb on - strand, within B158DRAFT_0704at 704.905 kb on - strand, within B158DRAFT_0704at 705.069 kb on - strand, within B158DRAFT_0704at 705.200 kb on + strand, within B158DRAFT_0704at 705.200 kb on + strand, within B158DRAFT_0704at 705.208 kb on - strand, within B158DRAFT_0704at 705.208 kb on - strand, within B158DRAFT_0704at 705.208 kb on - strand, within B158DRAFT_0704at 705.208 kb on - strand, within B158DRAFT_0704at 705.455 kb on + strand, within B158DRAFT_0704at 705.482 kb on + strand, within B158DRAFT_0704at 705.484 kb on - strand, within B158DRAFT_0704at 705.484 kb on - strand, within B158DRAFT_0704at 705.490 kb on - strand, within B158DRAFT_0704at 705.490 kb on - strand, within B158DRAFT_0704at 705.490 kb on - strand, within B158DRAFT_0704at 705.492 kb on + strand, within B158DRAFT_0704at 705.639 kb on + strandat 705.654 kb on - strandat 705.682 kb on - strandat 705.703 kb on + strandat 705.711 kb on - strandat 705.717 kb on + strandat 705.817 kb on + strandat 705.842 kb on - strandat 705.865 kb on + strandat 705.921 kb on + strand, within B158DRAFT_0705at 705.934 kb on - strand, within B158DRAFT_0705at 705.955 kb on + strand, within B158DRAFT_0705at 705.955 kb on + strand, within B158DRAFT_0705at 705.955 kb on + strand, within B158DRAFT_0705at 705.955 kb on + strand, within B158DRAFT_0705at 705.955 kb on + strand, within B158DRAFT_0705at 705.958 kb on - strand, within B158DRAFT_0705at 705.963 kb on - strand, within B158DRAFT_0705at 705.963 kb on - strand, within B158DRAFT_0705at 705.963 kb on - strand, within B158DRAFT_0705at 705.963 kb on - strand, within B158DRAFT_0705at 705.963 kb on - strand, within B158DRAFT_0705at 705.963 kb on - strand, within B158DRAFT_0705at 705.999 kb on + strand, within B158DRAFT_0705at 706.100 kb on + strand, within B158DRAFT_0705at 706.144 kb on - strand, within B158DRAFT_0705at 706.171 kb on + strand, within B158DRAFT_0705at 706.294 kb on + strand, within B158DRAFT_0705at 706.294 kb on + strand, within B158DRAFT_0705at 706.294 kb on + strand, within B158DRAFT_0705at 706.294 kb on + strand, within B158DRAFT_0705at 706.326 kb on - strand, within B158DRAFT_0705at 706.358 kb on + strand, within B158DRAFT_0705at 706.402 kb on + strand, within B158DRAFT_0705at 706.410 kb on - strand, within B158DRAFT_0705at 706.410 kb on - strand, within B158DRAFT_0705at 706.621 kb on - strand, within B158DRAFT_0705at 706.622 kb on - strand, within B158DRAFT_0705at 706.672 kb on + strand, within B158DRAFT_0705at 706.672 kb on + strand, within B158DRAFT_0705at 706.680 kb on - strand, within B158DRAFT_0705at 706.680 kb on - strand, within B158DRAFT_0705

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrite 20 mM
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703,590 - B158DRAFT_0703 0.57 -2.2
703,631 + B158DRAFT_0703 0.60 +1.5
703,658 - B158DRAFT_0703 0.61 -0.6
703,702 + B158DRAFT_0703 0.64 +0.3
703,797 - B158DRAFT_0703 0.70 -1.4
703,811 + B158DRAFT_0703 0.71 -0.3
703,821 + B158DRAFT_0703 0.71 +0.1
703,821 + B158DRAFT_0703 0.71 -0.3
703,821 + B158DRAFT_0703 0.71 +0.2
703,829 - B158DRAFT_0703 0.72 -0.3
703,919 + B158DRAFT_0703 0.78 -0.5
703,922 - B158DRAFT_0703 0.78 +1.1
704,003 - B158DRAFT_0703 0.83 +0.3
704,005 + B158DRAFT_0703 0.83 -3.0
704,040 + B158DRAFT_0703 0.85 -1.1
704,042 - B158DRAFT_0703 0.85 -0.6
704,048 - B158DRAFT_0703 0.86 +1.7
704,048 - B158DRAFT_0703 0.86 -1.3
704,110 + B158DRAFT_0703 0.89 +1.5
704,134 + -1.8
704,151 - +0.4
704,181 + -0.2
704,181 + -0.7
704,181 + +1.0
704,182 + -1.3
704,182 + -1.1
704,182 + +1.4
704,182 + -0.2
704,182 + +0.5
704,182 + +1.3
704,182 + +1.1
704,182 + -1.1
704,182 + +1.3
704,190 - -1.2
704,190 - +1.8
704,190 - -0.4
704,190 - +0.3
704,190 - -0.3
704,190 - -1.3
704,190 - -1.0
704,190 - -0.9
704,190 - +0.6
704,190 - -0.8
704,195 - -1.8
704,197 + -0.7
704,197 + -0.6
704,200 - -1.3
704,205 - +0.3
704,272 + +0.6
704,293 - -1.0
704,346 - +0.3
704,394 - -0.3
704,522 + +1.4
704,598 + +1.0
704,598 + +3.4
704,598 + -0.6
704,606 - B158DRAFT_0704 0.10 +1.1
704,606 - B158DRAFT_0704 0.10 +1.8
704,626 + B158DRAFT_0704 0.12 +1.0
704,671 + B158DRAFT_0704 0.16 +1.8
704,687 - B158DRAFT_0704 0.17 +1.8
704,733 - B158DRAFT_0704 0.21 +3.4
704,734 - B158DRAFT_0704 0.21 +2.4
704,744 + B158DRAFT_0704 0.21 +1.6
704,749 + B158DRAFT_0704 0.22 +1.0
704,749 + B158DRAFT_0704 0.22 +3.4
704,757 - B158DRAFT_0704 0.23 +2.4
704,890 - B158DRAFT_0704 0.33 +1.8
704,905 - B158DRAFT_0704 0.34 +3.4
705,069 - B158DRAFT_0704 0.48 +1.1
705,200 + B158DRAFT_0704 0.58 +0.2
705,200 + B158DRAFT_0704 0.58 +1.6
705,208 - B158DRAFT_0704 0.59 +1.4
705,208 - B158DRAFT_0704 0.59 +4.4
705,208 - B158DRAFT_0704 0.59 +1.6
705,208 - B158DRAFT_0704 0.59 +1.6
705,455 + B158DRAFT_0704 0.78 -1.3
705,482 + B158DRAFT_0704 0.81 +0.6
705,484 - B158DRAFT_0704 0.81 +1.0
705,484 - B158DRAFT_0704 0.81 -0.2
705,490 - B158DRAFT_0704 0.81 +3.4
705,490 - B158DRAFT_0704 0.81 +3.4
705,490 - B158DRAFT_0704 0.81 +1.6
705,492 + B158DRAFT_0704 0.81 +2.4
705,639 + +2.8
705,654 - +0.2
705,682 - +1.8
705,703 + +1.2
705,711 - +1.8
705,717 + -1.6
705,817 + +1.8
705,842 - +4.9
705,865 + +1.6
705,921 + B158DRAFT_0705 0.14 +1.1
705,934 - B158DRAFT_0705 0.15 +4.7
705,955 + B158DRAFT_0705 0.17 +2.4
705,955 + B158DRAFT_0705 0.17 +0.2
705,955 + B158DRAFT_0705 0.17 -0.6
705,955 + B158DRAFT_0705 0.17 +3.4
705,955 + B158DRAFT_0705 0.17 +3.4
705,958 - B158DRAFT_0705 0.18 +2.5
705,963 - B158DRAFT_0705 0.18 +5.1
705,963 - B158DRAFT_0705 0.18 +3.9
705,963 - B158DRAFT_0705 0.18 +0.2
705,963 - B158DRAFT_0705 0.18 +4.3
705,963 - B158DRAFT_0705 0.18 +3.7
705,963 - B158DRAFT_0705 0.18 +3.6
705,999 + B158DRAFT_0705 0.21 +4.2
706,100 + B158DRAFT_0705 0.30 +6.1
706,144 - B158DRAFT_0705 0.33 +5.7
706,171 + B158DRAFT_0705 0.36 +5.6
706,294 + B158DRAFT_0705 0.46 +5.2
706,294 + B158DRAFT_0705 0.46 +5.2
706,294 + B158DRAFT_0705 0.46 +6.3
706,294 + B158DRAFT_0705 0.46 +1.6
706,326 - B158DRAFT_0705 0.49 +4.6
706,358 + B158DRAFT_0705 0.52 +5.2
706,402 + B158DRAFT_0705 0.55 +4.9
706,410 - B158DRAFT_0705 0.56 +4.5
706,410 - B158DRAFT_0705 0.56 +7.3
706,621 - B158DRAFT_0705 0.74 +5.7
706,622 - B158DRAFT_0705 0.74 +2.5
706,672 + B158DRAFT_0705 0.78 +4.4
706,672 + B158DRAFT_0705 0.78 +3.2
706,680 - B158DRAFT_0705 0.79 +5.0
706,680 - B158DRAFT_0705 0.79 +5.3

Or see this region's nucleotide sequence