Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0621

Experiment: m.b. nitrite 20 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntB158DRAFT_0620 and B158DRAFT_0621 are separated by 28 nucleotidesB158DRAFT_0621 and B158DRAFT_0622 are separated by 33 nucleotidesB158DRAFT_0622 and B158DRAFT_0623 overlap by 20 nucleotides B158DRAFT_0620: B158DRAFT_0620 - Uncharacterized conserved protein, at 629,086 to 630,033 _0620 B158DRAFT_0621: B158DRAFT_0621 - Deoxyribodipyrimidine photolyase, at 630,062 to 631,441 _0621 B158DRAFT_0622: B158DRAFT_0622 - hypothetical protein, at 631,475 to 632,071 _0622 B158DRAFT_0623: B158DRAFT_0623 - hypothetical protein, at 632,052 to 632,540 _0623 Position (kb) 630 631 632Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 629.179 kb on - strandat 629.192 kb on + strand, within B158DRAFT_0620at 629.230 kb on + strand, within B158DRAFT_0620at 629.238 kb on - strand, within B158DRAFT_0620at 629.252 kb on + strand, within B158DRAFT_0620at 629.317 kb on - strand, within B158DRAFT_0620at 629.420 kb on + strand, within B158DRAFT_0620at 629.421 kb on + strand, within B158DRAFT_0620at 629.540 kb on + strand, within B158DRAFT_0620at 629.540 kb on + strand, within B158DRAFT_0620at 629.540 kb on + strand, within B158DRAFT_0620at 629.540 kb on + strand, within B158DRAFT_0620at 629.540 kb on + strand, within B158DRAFT_0620at 629.548 kb on - strand, within B158DRAFT_0620at 629.548 kb on - strand, within B158DRAFT_0620at 629.548 kb on - strand, within B158DRAFT_0620at 629.548 kb on - strand, within B158DRAFT_0620at 629.548 kb on - strand, within B158DRAFT_0620at 629.548 kb on - strand, within B158DRAFT_0620at 629.990 kb on - strandat 630.143 kb on - strandat 630.145 kb on + strandat 630.174 kb on + strandat 630.174 kb on + strandat 630.182 kb on - strandat 630.184 kb on + strandat 630.184 kb on + strandat 630.184 kb on + strandat 630.293 kb on - strand, within B158DRAFT_0621at 630.351 kb on - strand, within B158DRAFT_0621at 630.501 kb on - strand, within B158DRAFT_0621at 630.507 kb on - strand, within B158DRAFT_0621at 630.507 kb on - strand, within B158DRAFT_0621at 630.565 kb on - strand, within B158DRAFT_0621at 630.590 kb on + strand, within B158DRAFT_0621at 630.652 kb on + strand, within B158DRAFT_0621at 630.652 kb on + strand, within B158DRAFT_0621at 630.660 kb on - strand, within B158DRAFT_0621at 630.753 kb on - strand, within B158DRAFT_0621at 630.809 kb on + strand, within B158DRAFT_0621at 630.837 kb on - strand, within B158DRAFT_0621at 631.050 kb on - strand, within B158DRAFT_0621at 631.380 kb on + strandat 631.422 kb on + strandat 631.522 kb on + strandat 631.585 kb on + strand, within B158DRAFT_0622at 631.593 kb on - strand, within B158DRAFT_0622at 631.593 kb on - strand, within B158DRAFT_0622at 631.612 kb on + strand, within B158DRAFT_0622at 631.612 kb on + strand, within B158DRAFT_0622at 631.612 kb on + strand, within B158DRAFT_0622at 631.619 kb on + strand, within B158DRAFT_0622at 631.620 kb on - strand, within B158DRAFT_0622at 631.632 kb on - strand, within B158DRAFT_0622at 631.632 kb on - strand, within B158DRAFT_0622at 631.678 kb on - strand, within B158DRAFT_0622at 631.680 kb on + strand, within B158DRAFT_0622at 631.680 kb on + strand, within B158DRAFT_0622at 631.680 kb on + strand, within B158DRAFT_0622at 631.680 kb on + strand, within B158DRAFT_0622at 631.680 kb on + strand, within B158DRAFT_0622at 631.680 kb on + strand, within B158DRAFT_0622at 631.680 kb on + strand, within B158DRAFT_0622at 631.680 kb on + strand, within B158DRAFT_0622at 631.680 kb on + strand, within B158DRAFT_0622at 631.680 kb on + strand, within B158DRAFT_0622at 631.680 kb on + strand, within B158DRAFT_0622at 631.680 kb on + strand, within B158DRAFT_0622at 631.680 kb on + strand, within B158DRAFT_0622at 631.680 kb on + strand, within B158DRAFT_0622at 631.688 kb on - strand, within B158DRAFT_0622at 631.688 kb on - strand, within B158DRAFT_0622at 631.688 kb on - strand, within B158DRAFT_0622at 631.688 kb on - strand, within B158DRAFT_0622at 631.725 kb on + strand, within B158DRAFT_0622at 631.725 kb on + strand, within B158DRAFT_0622at 631.725 kb on + strand, within B158DRAFT_0622at 631.761 kb on + strand, within B158DRAFT_0622at 631.862 kb on - strand, within B158DRAFT_0622at 631.862 kb on - strand, within B158DRAFT_0622at 631.862 kb on - strand, within B158DRAFT_0622at 631.862 kb on - strand, within B158DRAFT_0622at 631.862 kb on - strand, within B158DRAFT_0622at 631.959 kb on + strand, within B158DRAFT_0622at 631.959 kb on + strand, within B158DRAFT_0622at 631.959 kb on + strand, within B158DRAFT_0622at 631.959 kb on + strand, within B158DRAFT_0622at 631.962 kb on - strand, within B158DRAFT_0622at 631.965 kb on + strand, within B158DRAFT_0622at 631.967 kb on - strand, within B158DRAFT_0622at 631.967 kb on - strand, within B158DRAFT_0622at 631.968 kb on - strand, within B158DRAFT_0622at 631.973 kb on - strand, within B158DRAFT_0622at 631.973 kb on - strand, within B158DRAFT_0622at 631.975 kb on + strand, within B158DRAFT_0622at 631.994 kb on + strand, within B158DRAFT_0622at 632.047 kb on + strandat 632.242 kb on - strand, within B158DRAFT_0623at 632.242 kb on - strand, within B158DRAFT_0623at 632.266 kb on + strand, within B158DRAFT_0623at 632.295 kb on + strand, within B158DRAFT_0623at 632.325 kb on - strand, within B158DRAFT_0623at 632.331 kb on - strand, within B158DRAFT_0623at 632.359 kb on - strand, within B158DRAFT_0623at 632.428 kb on + strand, within B158DRAFT_0623at 632.428 kb on + strand, within B158DRAFT_0623at 632.436 kb on - strand, within B158DRAFT_0623

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrite 20 mM
remove
629,179 - -0.6
629,192 + B158DRAFT_0620 0.11 -1.4
629,230 + B158DRAFT_0620 0.15 -0.5
629,238 - B158DRAFT_0620 0.16 +0.6
629,252 + B158DRAFT_0620 0.18 -0.9
629,317 - B158DRAFT_0620 0.24 -1.8
629,420 + B158DRAFT_0620 0.35 -0.2
629,421 + B158DRAFT_0620 0.35 +0.1
629,540 + B158DRAFT_0620 0.48 -1.7
629,540 + B158DRAFT_0620 0.48 -0.0
629,540 + B158DRAFT_0620 0.48 +1.3
629,540 + B158DRAFT_0620 0.48 +0.3
629,540 + B158DRAFT_0620 0.48 -0.7
629,548 - B158DRAFT_0620 0.49 +1.3
629,548 - B158DRAFT_0620 0.49 -0.2
629,548 - B158DRAFT_0620 0.49 +0.3
629,548 - B158DRAFT_0620 0.49 -0.8
629,548 - B158DRAFT_0620 0.49 -0.5
629,548 - B158DRAFT_0620 0.49 -0.6
629,990 - +0.8
630,143 - -0.4
630,145 + -0.6
630,174 + +0.8
630,174 + -0.8
630,182 - -1.7
630,184 + -1.0
630,184 + -1.5
630,184 + -1.1
630,293 - B158DRAFT_0621 0.17 +0.1
630,351 - B158DRAFT_0621 0.21 +2.0
630,501 - B158DRAFT_0621 0.32 -0.4
630,507 - B158DRAFT_0621 0.32 +0.4
630,507 - B158DRAFT_0621 0.32 -0.7
630,565 - B158DRAFT_0621 0.36 +0.2
630,590 + B158DRAFT_0621 0.38 +0.5
630,652 + B158DRAFT_0621 0.43 +0.1
630,652 + B158DRAFT_0621 0.43 +2.1
630,660 - B158DRAFT_0621 0.43 -1.1
630,753 - B158DRAFT_0621 0.50 +0.9
630,809 + B158DRAFT_0621 0.54 +0.4
630,837 - B158DRAFT_0621 0.56 -0.4
631,050 - B158DRAFT_0621 0.72 +0.0
631,380 + +1.0
631,422 + +1.1
631,522 + -0.1
631,585 + B158DRAFT_0622 0.18 +0.8
631,593 - B158DRAFT_0622 0.20 -1.6
631,593 - B158DRAFT_0622 0.20 -1.2
631,612 + B158DRAFT_0622 0.23 +0.7
631,612 + B158DRAFT_0622 0.23 -2.0
631,612 + B158DRAFT_0622 0.23 +0.8
631,619 + B158DRAFT_0622 0.24 -0.7
631,620 - B158DRAFT_0622 0.24 -2.1
631,632 - B158DRAFT_0622 0.26 -0.1
631,632 - B158DRAFT_0622 0.26 -0.0
631,678 - B158DRAFT_0622 0.34 +0.2
631,680 + B158DRAFT_0622 0.34 -0.8
631,680 + B158DRAFT_0622 0.34 -1.9
631,680 + B158DRAFT_0622 0.34 -0.2
631,680 + B158DRAFT_0622 0.34 -0.5
631,680 + B158DRAFT_0622 0.34 -0.7
631,680 + B158DRAFT_0622 0.34 -0.2
631,680 + B158DRAFT_0622 0.34 +1.9
631,680 + B158DRAFT_0622 0.34 -1.4
631,680 + B158DRAFT_0622 0.34 -2.9
631,680 + B158DRAFT_0622 0.34 -1.4
631,680 + B158DRAFT_0622 0.34 +0.6
631,680 + B158DRAFT_0622 0.34 +0.0
631,680 + B158DRAFT_0622 0.34 -0.9
631,680 + B158DRAFT_0622 0.34 -0.5
631,688 - B158DRAFT_0622 0.36 +0.9
631,688 - B158DRAFT_0622 0.36 -0.6
631,688 - B158DRAFT_0622 0.36 -0.0
631,688 - B158DRAFT_0622 0.36 -0.5
631,725 + B158DRAFT_0622 0.42 +0.2
631,725 + B158DRAFT_0622 0.42 -0.9
631,725 + B158DRAFT_0622 0.42 +0.6
631,761 + B158DRAFT_0622 0.48 -0.8
631,862 - B158DRAFT_0622 0.65 -1.7
631,862 - B158DRAFT_0622 0.65 +0.1
631,862 - B158DRAFT_0622 0.65 -2.1
631,862 - B158DRAFT_0622 0.65 -1.1
631,862 - B158DRAFT_0622 0.65 +1.5
631,959 + B158DRAFT_0622 0.81 +0.8
631,959 + B158DRAFT_0622 0.81 -0.3
631,959 + B158DRAFT_0622 0.81 -0.4
631,959 + B158DRAFT_0622 0.81 -1.1
631,962 - B158DRAFT_0622 0.82 -1.5
631,965 + B158DRAFT_0622 0.82 -0.5
631,967 - B158DRAFT_0622 0.82 -0.6
631,967 - B158DRAFT_0622 0.82 +0.2
631,968 - B158DRAFT_0622 0.83 -1.4
631,973 - B158DRAFT_0622 0.83 -1.1
631,973 - B158DRAFT_0622 0.83 -1.6
631,975 + B158DRAFT_0622 0.84 -0.6
631,994 + B158DRAFT_0622 0.87 -1.3
632,047 + +1.5
632,242 - B158DRAFT_0623 0.39 -0.3
632,242 - B158DRAFT_0623 0.39 +1.1
632,266 + B158DRAFT_0623 0.44 +0.8
632,295 + B158DRAFT_0623 0.50 -0.5
632,325 - B158DRAFT_0623 0.56 -0.9
632,331 - B158DRAFT_0623 0.57 -1.3
632,359 - B158DRAFT_0623 0.63 -1.1
632,428 + B158DRAFT_0623 0.77 -0.5
632,428 + B158DRAFT_0623 0.77 -0.3
632,436 - B158DRAFT_0623 0.79 -2.2

Or see this region's nucleotide sequence