Experiment: m.b. nitrite 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_0488 and B158DRAFT_0489 are separated by 60 nucleotides B158DRAFT_0489 and B158DRAFT_0490 are separated by 36 nucleotides B158DRAFT_0490 and B158DRAFT_0491 are separated by 101 nucleotides
B158DRAFT_0488: B158DRAFT_0488 - Cytochrome c5, at 488,183 to 488,623
_0488
B158DRAFT_0489: B158DRAFT_0489 - uncharacterized domain 1, at 488,684 to 489,307
_0489
B158DRAFT_0490: B158DRAFT_0490 - rarD protein, at 489,344 to 490,264
_0490
B158DRAFT_0491: B158DRAFT_0491 - Di- and tricarboxylate transporters, at 490,366 to 492,141
_0491
Position (kb) 489
490
491 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 488.397 kb on + strand, within B158DRAFT_0488 at 488.410 kb on + strand, within B158DRAFT_0488 at 488.410 kb on + strand, within B158DRAFT_0488 at 488.418 kb on - strand, within B158DRAFT_0488 at 488.418 kb on - strand, within B158DRAFT_0488 at 488.508 kb on + strand, within B158DRAFT_0488 at 488.516 kb on - strand, within B158DRAFT_0488 at 488.516 kb on - strand, within B158DRAFT_0488 at 488.516 kb on - strand, within B158DRAFT_0488 at 488.545 kb on + strand, within B158DRAFT_0488 at 488.619 kb on + strand at 488.637 kb on + strand at 488.637 kb on + strand at 488.637 kb on + strand at 488.637 kb on + strand at 488.637 kb on + strand at 488.645 kb on - strand at 488.645 kb on - strand at 488.645 kb on - strand at 488.645 kb on - strand at 488.645 kb on - strand at 488.645 kb on - strand at 488.645 kb on - strand at 488.652 kb on - strand at 488.654 kb on + strand at 488.692 kb on + strand at 488.700 kb on - strand at 488.814 kb on - strand, within B158DRAFT_0489 at 488.836 kb on - strand, within B158DRAFT_0489 at 488.916 kb on + strand, within B158DRAFT_0489 at 489.038 kb on + strand, within B158DRAFT_0489 at 489.038 kb on + strand, within B158DRAFT_0489 at 489.038 kb on + strand, within B158DRAFT_0489 at 489.141 kb on + strand, within B158DRAFT_0489 at 489.190 kb on - strand, within B158DRAFT_0489 at 489.205 kb on + strand, within B158DRAFT_0489 at 489.226 kb on + strand, within B158DRAFT_0489 at 489.234 kb on - strand, within B158DRAFT_0489 at 489.301 kb on + strand at 489.303 kb on - strand at 489.315 kb on - strand at 489.365 kb on + strand at 489.373 kb on - strand at 489.378 kb on - strand at 489.410 kb on + strand at 489.418 kb on + strand at 489.436 kb on - strand, within B158DRAFT_0490 at 489.469 kb on + strand, within B158DRAFT_0490 at 489.469 kb on + strand, within B158DRAFT_0490 at 489.469 kb on + strand, within B158DRAFT_0490 at 489.474 kb on + strand, within B158DRAFT_0490 at 489.474 kb on + strand, within B158DRAFT_0490 at 489.474 kb on + strand, within B158DRAFT_0490 at 489.474 kb on + strand, within B158DRAFT_0490 at 489.477 kb on - strand, within B158DRAFT_0490 at 489.477 kb on - strand, within B158DRAFT_0490 at 489.482 kb on - strand, within B158DRAFT_0490 at 489.482 kb on - strand, within B158DRAFT_0490 at 489.635 kb on + strand, within B158DRAFT_0490 at 489.665 kb on + strand, within B158DRAFT_0490 at 489.673 kb on - strand, within B158DRAFT_0490 at 489.680 kb on + strand, within B158DRAFT_0490 at 489.792 kb on + strand, within B158DRAFT_0490 at 489.792 kb on + strand, within B158DRAFT_0490 at 489.792 kb on + strand, within B158DRAFT_0490 at 489.800 kb on - strand, within B158DRAFT_0490 at 489.824 kb on + strand, within B158DRAFT_0490 at 489.832 kb on - strand, within B158DRAFT_0490 at 489.832 kb on - strand, within B158DRAFT_0490 at 489.832 kb on - strand, within B158DRAFT_0490 at 489.847 kb on + strand, within B158DRAFT_0490 at 489.847 kb on + strand, within B158DRAFT_0490 at 489.847 kb on + strand, within B158DRAFT_0490 at 489.847 kb on + strand, within B158DRAFT_0490 at 489.847 kb on + strand, within B158DRAFT_0490 at 489.855 kb on - strand, within B158DRAFT_0490 at 489.855 kb on - strand, within B158DRAFT_0490 at 489.855 kb on - strand, within B158DRAFT_0490 at 489.855 kb on - strand, within B158DRAFT_0490 at 489.855 kb on - strand, within B158DRAFT_0490 at 489.911 kb on + strand, within B158DRAFT_0490 at 489.919 kb on - strand, within B158DRAFT_0490 at 489.924 kb on + strand, within B158DRAFT_0490 at 489.958 kb on - strand, within B158DRAFT_0490 at 489.958 kb on - strand, within B158DRAFT_0490 at 490.024 kb on - strand, within B158DRAFT_0490 at 490.032 kb on - strand, within B158DRAFT_0490 at 490.065 kb on + strand, within B158DRAFT_0490 at 490.065 kb on + strand, within B158DRAFT_0490 at 490.075 kb on + strand, within B158DRAFT_0490 at 490.088 kb on + strand, within B158DRAFT_0490 at 490.096 kb on - strand, within B158DRAFT_0490 at 490.152 kb on + strand, within B158DRAFT_0490 at 490.152 kb on + strand, within B158DRAFT_0490 at 490.152 kb on + strand, within B158DRAFT_0490 at 490.152 kb on - strand, within B158DRAFT_0490 at 490.160 kb on - strand, within B158DRAFT_0490 at 490.160 kb on - strand, within B158DRAFT_0490 at 490.160 kb on - strand, within B158DRAFT_0490 at 490.162 kb on + strand, within B158DRAFT_0490 at 490.162 kb on + strand, within B158DRAFT_0490 at 490.165 kb on - strand, within B158DRAFT_0490 at 490.165 kb on - strand, within B158DRAFT_0490 at 490.167 kb on + strand, within B158DRAFT_0490 at 490.167 kb on + strand, within B158DRAFT_0490 at 490.170 kb on - strand, within B158DRAFT_0490 at 490.170 kb on - strand, within B158DRAFT_0490 at 490.170 kb on - strand, within B158DRAFT_0490 at 490.172 kb on + strand, within B158DRAFT_0490 at 490.172 kb on + strand, within B158DRAFT_0490 at 490.172 kb on + strand, within B158DRAFT_0490 at 490.175 kb on - strand at 490.180 kb on - strand at 490.265 kb on + strand at 490.305 kb on + strand at 490.370 kb on - strand at 490.447 kb on + strand at 490.554 kb on - strand, within B158DRAFT_0491 at 490.631 kb on - strand, within B158DRAFT_0491 at 490.729 kb on - strand, within B158DRAFT_0491 at 490.763 kb on + strand, within B158DRAFT_0491 at 490.763 kb on + strand, within B158DRAFT_0491 at 490.763 kb on + strand, within B158DRAFT_0491 at 490.771 kb on - strand, within B158DRAFT_0491 at 490.781 kb on - strand, within B158DRAFT_0491 at 490.781 kb on - strand, within B158DRAFT_0491 at 490.788 kb on - strand, within B158DRAFT_0491 at 490.788 kb on - strand, within B158DRAFT_0491 at 490.788 kb on - strand, within B158DRAFT_0491 at 490.811 kb on + strand, within B158DRAFT_0491 at 490.811 kb on + strand, within B158DRAFT_0491 at 490.811 kb on + strand, within B158DRAFT_0491 at 490.811 kb on + strand, within B158DRAFT_0491 at 490.811 kb on + strand, within B158DRAFT_0491 at 490.811 kb on + strand, within B158DRAFT_0491 at 490.811 kb on + strand, within B158DRAFT_0491 at 490.811 kb on + strand, within B158DRAFT_0491 at 490.811 kb on + strand, within B158DRAFT_0491 at 490.819 kb on - strand, within B158DRAFT_0491 at 490.819 kb on - strand, within B158DRAFT_0491 at 490.819 kb on - strand, within B158DRAFT_0491 at 490.819 kb on - strand, within B158DRAFT_0491 at 490.819 kb on - strand, within B158DRAFT_0491 at 490.819 kb on - strand, within B158DRAFT_0491 at 490.829 kb on - strand, within B158DRAFT_0491 at 490.850 kb on + strand, within B158DRAFT_0491 at 490.850 kb on + strand, within B158DRAFT_0491 at 490.850 kb on + strand, within B158DRAFT_0491 at 490.922 kb on - strand, within B158DRAFT_0491 at 490.922 kb on - strand, within B158DRAFT_0491 at 491.041 kb on - strand, within B158DRAFT_0491 at 491.079 kb on + strand, within B158DRAFT_0491 at 491.095 kb on + strand, within B158DRAFT_0491 at 491.147 kb on + strand, within B158DRAFT_0491 at 491.147 kb on + strand, within B158DRAFT_0491 at 491.155 kb on - strand, within B158DRAFT_0491 at 491.155 kb on - strand, within B158DRAFT_0491 at 491.171 kb on - strand, within B158DRAFT_0491 at 491.236 kb on + strand, within B158DRAFT_0491 at 491.244 kb on - strand, within B158DRAFT_0491 at 491.264 kb on + strand, within B158DRAFT_0491
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 20 mM remove 488,397 + B158DRAFT_0488 0.49 +1.6 488,410 + B158DRAFT_0488 0.51 +1.0 488,410 + B158DRAFT_0488 0.51 +2.0 488,418 - B158DRAFT_0488 0.53 +1.0 488,418 - B158DRAFT_0488 0.53 +1.4 488,508 + B158DRAFT_0488 0.74 +3.0 488,516 - B158DRAFT_0488 0.76 -1.1 488,516 - B158DRAFT_0488 0.76 -0.7 488,516 - B158DRAFT_0488 0.76 +1.4 488,545 + B158DRAFT_0488 0.82 +1.7 488,619 + +0.8 488,637 + +3.1 488,637 + +1.4 488,637 + +1.0 488,637 + +1.3 488,637 + +2.0 488,645 - +1.5 488,645 - +1.3 488,645 - +1.5 488,645 - +0.9 488,645 - +1.0 488,645 - +2.4 488,645 - +1.4 488,652 - -0.9 488,654 + +0.7 488,692 + -0.8 488,700 - -0.0 488,814 - B158DRAFT_0489 0.21 +0.9 488,836 - B158DRAFT_0489 0.24 +1.5 488,916 + B158DRAFT_0489 0.37 -1.5 489,038 + B158DRAFT_0489 0.57 +1.7 489,038 + B158DRAFT_0489 0.57 -1.3 489,038 + B158DRAFT_0489 0.57 -1.6 489,141 + B158DRAFT_0489 0.73 -1.3 489,190 - B158DRAFT_0489 0.81 +0.4 489,205 + B158DRAFT_0489 0.83 -0.4 489,226 + B158DRAFT_0489 0.87 -0.7 489,234 - B158DRAFT_0489 0.88 +0.0 489,301 + -0.6 489,303 - +0.2 489,315 - -0.9 489,365 + +0.6 489,373 - +0.2 489,378 - -0.3 489,410 + -0.4 489,418 + -0.5 489,436 - B158DRAFT_0490 0.10 -0.1 489,469 + B158DRAFT_0490 0.14 -2.2 489,469 + B158DRAFT_0490 0.14 +0.6 489,469 + B158DRAFT_0490 0.14 -1.7 489,474 + B158DRAFT_0490 0.14 +0.2 489,474 + B158DRAFT_0490 0.14 -0.4 489,474 + B158DRAFT_0490 0.14 +0.3 489,474 + B158DRAFT_0490 0.14 +0.1 489,477 - B158DRAFT_0490 0.14 -0.7 489,477 - B158DRAFT_0490 0.14 -0.7 489,482 - B158DRAFT_0490 0.15 -0.1 489,482 - B158DRAFT_0490 0.15 -2.6 489,635 + B158DRAFT_0490 0.32 +2.0 489,665 + B158DRAFT_0490 0.35 -2.1 489,673 - B158DRAFT_0490 0.36 -0.0 489,680 + B158DRAFT_0490 0.36 +0.2 489,792 + B158DRAFT_0490 0.49 +0.3 489,792 + B158DRAFT_0490 0.49 -2.3 489,792 + B158DRAFT_0490 0.49 +0.2 489,800 - B158DRAFT_0490 0.50 -1.1 489,824 + B158DRAFT_0490 0.52 -0.6 489,832 - B158DRAFT_0490 0.53 -0.8 489,832 - B158DRAFT_0490 0.53 -0.3 489,832 - B158DRAFT_0490 0.53 -0.2 489,847 + B158DRAFT_0490 0.55 +1.9 489,847 + B158DRAFT_0490 0.55 -0.4 489,847 + B158DRAFT_0490 0.55 -1.0 489,847 + B158DRAFT_0490 0.55 -1.0 489,847 + B158DRAFT_0490 0.55 -1.1 489,855 - B158DRAFT_0490 0.55 +1.5 489,855 - B158DRAFT_0490 0.55 -0.9 489,855 - B158DRAFT_0490 0.55 -1.3 489,855 - B158DRAFT_0490 0.55 -0.8 489,855 - B158DRAFT_0490 0.55 +0.8 489,911 + B158DRAFT_0490 0.62 -0.1 489,919 - B158DRAFT_0490 0.62 -0.8 489,924 + B158DRAFT_0490 0.63 -0.8 489,958 - B158DRAFT_0490 0.67 -0.1 489,958 - B158DRAFT_0490 0.67 -0.2 490,024 - B158DRAFT_0490 0.74 -0.9 490,032 - B158DRAFT_0490 0.75 +0.9 490,065 + B158DRAFT_0490 0.78 -2.5 490,065 + B158DRAFT_0490 0.78 -1.7 490,075 + B158DRAFT_0490 0.79 -1.8 490,088 + B158DRAFT_0490 0.81 -0.3 490,096 - B158DRAFT_0490 0.82 +2.7 490,152 + B158DRAFT_0490 0.88 -0.0 490,152 + B158DRAFT_0490 0.88 -1.5 490,152 + B158DRAFT_0490 0.88 -1.9 490,152 - B158DRAFT_0490 0.88 +1.3 490,160 - B158DRAFT_0490 0.89 -0.3 490,160 - B158DRAFT_0490 0.89 -1.3 490,160 - B158DRAFT_0490 0.89 +0.1 490,162 + B158DRAFT_0490 0.89 -0.5 490,162 + B158DRAFT_0490 0.89 +0.6 490,165 - B158DRAFT_0490 0.89 -0.8 490,165 - B158DRAFT_0490 0.89 +0.7 490,167 + B158DRAFT_0490 0.89 -0.2 490,167 + B158DRAFT_0490 0.89 -1.0 490,170 - B158DRAFT_0490 0.90 +0.5 490,170 - B158DRAFT_0490 0.90 +0.5 490,170 - B158DRAFT_0490 0.90 -0.2 490,172 + B158DRAFT_0490 0.90 -1.2 490,172 + B158DRAFT_0490 0.90 -1.4 490,172 + B158DRAFT_0490 0.90 -0.1 490,175 - +0.5 490,180 - +0.0 490,265 + +2.0 490,305 + +0.2 490,370 - -2.2 490,447 + +0.1 490,554 - B158DRAFT_0491 0.11 -0.7 490,631 - B158DRAFT_0491 0.15 -1.2 490,729 - B158DRAFT_0491 0.20 -0.1 490,763 + B158DRAFT_0491 0.22 +0.0 490,763 + B158DRAFT_0491 0.22 -1.2 490,763 + B158DRAFT_0491 0.22 -0.7 490,771 - B158DRAFT_0491 0.23 -0.6 490,781 - B158DRAFT_0491 0.23 -0.4 490,781 - B158DRAFT_0491 0.23 -2.5 490,788 - B158DRAFT_0491 0.24 -1.6 490,788 - B158DRAFT_0491 0.24 -0.6 490,788 - B158DRAFT_0491 0.24 -0.1 490,811 + B158DRAFT_0491 0.25 -0.1 490,811 + B158DRAFT_0491 0.25 -1.0 490,811 + B158DRAFT_0491 0.25 -1.9 490,811 + B158DRAFT_0491 0.25 -0.7 490,811 + B158DRAFT_0491 0.25 -1.4 490,811 + B158DRAFT_0491 0.25 -1.9 490,811 + B158DRAFT_0491 0.25 +0.8 490,811 + B158DRAFT_0491 0.25 -0.8 490,811 + B158DRAFT_0491 0.25 -0.5 490,819 - B158DRAFT_0491 0.26 +1.1 490,819 - B158DRAFT_0491 0.26 +0.3 490,819 - B158DRAFT_0491 0.26 -0.3 490,819 - B158DRAFT_0491 0.26 +2.0 490,819 - B158DRAFT_0491 0.26 -0.6 490,819 - B158DRAFT_0491 0.26 -0.4 490,829 - B158DRAFT_0491 0.26 +0.7 490,850 + B158DRAFT_0491 0.27 -1.5 490,850 + B158DRAFT_0491 0.27 -0.7 490,850 + B158DRAFT_0491 0.27 -0.7 490,922 - B158DRAFT_0491 0.31 -0.6 490,922 - B158DRAFT_0491 0.31 -0.6 491,041 - B158DRAFT_0491 0.38 +0.1 491,079 + B158DRAFT_0491 0.40 +1.3 491,095 + B158DRAFT_0491 0.41 -0.9 491,147 + B158DRAFT_0491 0.44 +0.0 491,147 + B158DRAFT_0491 0.44 -0.6 491,155 - B158DRAFT_0491 0.44 -0.7 491,155 - B158DRAFT_0491 0.44 +0.9 491,171 - B158DRAFT_0491 0.45 -1.3 491,236 + B158DRAFT_0491 0.49 -0.6 491,244 - B158DRAFT_0491 0.49 -1.2 491,264 + B158DRAFT_0491 0.51 -1.3
Or see this region's nucleotide sequence