Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0263

Experiment: m.b. nitrite 20 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntB158DRAFT_0262 and B158DRAFT_0263 are separated by 98 nucleotidesB158DRAFT_0263 and B158DRAFT_0264 are separated by 128 nucleotides B158DRAFT_0262: B158DRAFT_0262 - hypothetical protein, at 268,544 to 269,149 _0262 B158DRAFT_0263: B158DRAFT_0263 - Predicted redox protein, regulator of disulfide bond formation, at 269,248 to 269,646 _0263 B158DRAFT_0264: B158DRAFT_0264 - cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases, at 269,775 to 270,410 _0264 Position (kb) 269 270Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 268.331 kb on + strandat 268.331 kb on + strandat 268.331 kb on + strandat 268.339 kb on - strandat 268.358 kb on + strandat 268.358 kb on + strandat 268.364 kb on + strandat 268.371 kb on - strandat 268.456 kb on + strandat 268.466 kb on + strandat 268.469 kb on - strandat 268.469 kb on - strandat 268.474 kb on - strandat 268.474 kb on - strandat 268.507 kb on + strandat 268.536 kb on - strandat 268.614 kb on + strand, within B158DRAFT_0262at 268.615 kb on - strand, within B158DRAFT_0262at 268.615 kb on - strand, within B158DRAFT_0262at 268.622 kb on - strand, within B158DRAFT_0262at 268.632 kb on - strand, within B158DRAFT_0262at 268.646 kb on + strand, within B158DRAFT_0262at 268.646 kb on + strand, within B158DRAFT_0262at 268.679 kb on + strand, within B158DRAFT_0262at 268.705 kb on + strand, within B158DRAFT_0262at 268.710 kb on + strand, within B158DRAFT_0262at 268.713 kb on - strand, within B158DRAFT_0262at 268.713 kb on - strand, within B158DRAFT_0262at 268.713 kb on - strand, within B158DRAFT_0262at 268.713 kb on - strand, within B158DRAFT_0262at 268.713 kb on - strand, within B158DRAFT_0262at 268.713 kb on - strand, within B158DRAFT_0262at 268.804 kb on - strand, within B158DRAFT_0262at 268.829 kb on + strand, within B158DRAFT_0262at 268.887 kb on + strand, within B158DRAFT_0262at 268.887 kb on + strand, within B158DRAFT_0262at 268.918 kb on + strand, within B158DRAFT_0262at 268.918 kb on + strand, within B158DRAFT_0262at 268.918 kb on + strand, within B158DRAFT_0262at 268.926 kb on - strand, within B158DRAFT_0262at 268.926 kb on - strand, within B158DRAFT_0262at 268.926 kb on - strand, within B158DRAFT_0262at 269.017 kb on + strand, within B158DRAFT_0262at 269.022 kb on + strand, within B158DRAFT_0262at 269.030 kb on - strand, within B158DRAFT_0262at 269.030 kb on - strand, within B158DRAFT_0262at 269.035 kb on - strand, within B158DRAFT_0262at 269.187 kb on + strandat 269.187 kb on + strandat 269.325 kb on - strand, within B158DRAFT_0263at 269.430 kb on - strand, within B158DRAFT_0263at 269.528 kb on - strand, within B158DRAFT_0263at 269.619 kb on + strandat 269.629 kb on + strandat 269.636 kb on - strandat 269.636 kb on - strandat 269.637 kb on - strandat 269.637 kb on - strandat 269.723 kb on - strandat 269.791 kb on - strandat 269.801 kb on + strandat 270.028 kb on - strand, within B158DRAFT_0264at 270.030 kb on + strand, within B158DRAFT_0264at 270.030 kb on + strand, within B158DRAFT_0264at 270.038 kb on - strand, within B158DRAFT_0264at 270.150 kb on - strand, within B158DRAFT_0264at 270.259 kb on - strand, within B158DRAFT_0264at 270.264 kb on - strand, within B158DRAFT_0264at 270.272 kb on + strand, within B158DRAFT_0264at 270.272 kb on + strand, within B158DRAFT_0264at 270.272 kb on + strand, within B158DRAFT_0264at 270.280 kb on - strand, within B158DRAFT_0264at 270.280 kb on - strand, within B158DRAFT_0264at 270.334 kb on - strand, within B158DRAFT_0264

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrite 20 mM
remove
268,331 + +1.9
268,331 + -0.5
268,331 + -0.5
268,339 - -2.9
268,358 + -0.7
268,358 + -1.0
268,364 + -2.9
268,371 - -1.0
268,456 + -0.9
268,466 + -1.2
268,469 - -0.5
268,469 - -2.2
268,474 - -2.4
268,474 - -0.3
268,507 + -0.2
268,536 - -1.9
268,614 + B158DRAFT_0262 0.12 -0.4
268,615 - B158DRAFT_0262 0.12 -0.1
268,615 - B158DRAFT_0262 0.12 -1.9
268,622 - B158DRAFT_0262 0.13 -1.2
268,632 - B158DRAFT_0262 0.15 -2.4
268,646 + B158DRAFT_0262 0.17 +2.4
268,646 + B158DRAFT_0262 0.17 -0.7
268,679 + B158DRAFT_0262 0.22 -0.4
268,705 + B158DRAFT_0262 0.27 -1.0
268,710 + B158DRAFT_0262 0.27 +0.8
268,713 - B158DRAFT_0262 0.28 -1.7
268,713 - B158DRAFT_0262 0.28 +1.7
268,713 - B158DRAFT_0262 0.28 +0.3
268,713 - B158DRAFT_0262 0.28 +1.1
268,713 - B158DRAFT_0262 0.28 -0.7
268,713 - B158DRAFT_0262 0.28 -2.3
268,804 - B158DRAFT_0262 0.43 +1.1
268,829 + B158DRAFT_0262 0.47 -0.4
268,887 + B158DRAFT_0262 0.57 -1.6
268,887 + B158DRAFT_0262 0.57 +0.5
268,918 + B158DRAFT_0262 0.62 -0.7
268,918 + B158DRAFT_0262 0.62 -0.3
268,918 + B158DRAFT_0262 0.62 -1.3
268,926 - B158DRAFT_0262 0.63 -1.2
268,926 - B158DRAFT_0262 0.63 +0.7
268,926 - B158DRAFT_0262 0.63 -0.1
269,017 + B158DRAFT_0262 0.78 -2.3
269,022 + B158DRAFT_0262 0.79 -2.4
269,030 - B158DRAFT_0262 0.80 -0.2
269,030 - B158DRAFT_0262 0.80 -0.1
269,035 - B158DRAFT_0262 0.81 +1.7
269,187 + -1.6
269,187 + -0.7
269,325 - B158DRAFT_0263 0.19 +0.2
269,430 - B158DRAFT_0263 0.46 -2.3
269,528 - B158DRAFT_0263 0.70 +0.9
269,619 + +1.9
269,629 + +0.2
269,636 - -0.1
269,636 - -1.0
269,637 - +0.6
269,637 - +1.1
269,723 - +0.3
269,791 - +0.0
269,801 + +0.8
270,028 - B158DRAFT_0264 0.40 -0.5
270,030 + B158DRAFT_0264 0.40 +0.1
270,030 + B158DRAFT_0264 0.40 -0.6
270,038 - B158DRAFT_0264 0.41 -0.1
270,150 - B158DRAFT_0264 0.59 -0.2
270,259 - B158DRAFT_0264 0.76 -0.9
270,264 - B158DRAFT_0264 0.77 -1.9
270,272 + B158DRAFT_0264 0.78 -0.3
270,272 + B158DRAFT_0264 0.78 -2.8
270,272 + B158DRAFT_0264 0.78 +1.1
270,280 - B158DRAFT_0264 0.79 -0.0
270,280 - B158DRAFT_0264 0.79 +0.0
270,334 - B158DRAFT_0264 0.88 -0.8

Or see this region's nucleotide sequence