Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0235

Experiment: m.b. nitrite 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_0234 and B158DRAFT_0235 are separated by 395 nucleotidesB158DRAFT_0235 and B158DRAFT_0236 are separated by 555 nucleotides B158DRAFT_0234: B158DRAFT_0234 - Subtilisin-like serine proteases, at 239,295 to 241,118 _0234 B158DRAFT_0235: B158DRAFT_0235 - FOG: PKD repeat, at 241,514 to 242,306 _0235 B158DRAFT_0236: B158DRAFT_0236 - Subtilisin-like serine proteases, at 242,862 to 243,499 _0236 Position (kb) 241 242 243Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 240.637 kb on - strand, within B158DRAFT_0234at 240.639 kb on + strand, within B158DRAFT_0234at 240.730 kb on + strand, within B158DRAFT_0234at 240.730 kb on + strand, within B158DRAFT_0234at 240.730 kb on + strand, within B158DRAFT_0234at 240.738 kb on - strand, within B158DRAFT_0234at 240.839 kb on + strand, within B158DRAFT_0234at 240.847 kb on - strand, within B158DRAFT_0234at 240.847 kb on - strand, within B158DRAFT_0234at 240.847 kb on - strand, within B158DRAFT_0234at 240.920 kb on - strand, within B158DRAFT_0234at 240.935 kb on - strand, within B158DRAFT_0234at 240.959 kb on + strandat 240.959 kb on + strandat 240.961 kb on - strandat 240.975 kb on + strandat 241.022 kb on - strandat 241.022 kb on - strandat 241.022 kb on - strandat 241.022 kb on - strandat 241.022 kb on - strandat 241.022 kb on - strandat 241.116 kb on + strandat 241.116 kb on + strandat 241.289 kb on + strandat 241.567 kb on + strandat 241.574 kb on + strandat 241.574 kb on + strandat 241.574 kb on + strandat 241.574 kb on + strandat 241.582 kb on - strandat 241.582 kb on - strandat 241.582 kb on - strandat 241.582 kb on - strandat 241.582 kb on - strandat 241.606 kb on + strand, within B158DRAFT_0235at 241.614 kb on - strand, within B158DRAFT_0235at 241.671 kb on - strand, within B158DRAFT_0235at 241.671 kb on - strand, within B158DRAFT_0235at 241.686 kb on - strand, within B158DRAFT_0235at 241.707 kb on - strand, within B158DRAFT_0235at 241.744 kb on + strand, within B158DRAFT_0235at 241.744 kb on + strand, within B158DRAFT_0235at 241.752 kb on - strand, within B158DRAFT_0235at 241.752 kb on - strand, within B158DRAFT_0235at 241.752 kb on - strand, within B158DRAFT_0235at 241.752 kb on - strand, within B158DRAFT_0235at 241.754 kb on + strand, within B158DRAFT_0235at 241.759 kb on + strand, within B158DRAFT_0235at 241.759 kb on + strand, within B158DRAFT_0235at 241.762 kb on - strand, within B158DRAFT_0235at 241.776 kb on + strand, within B158DRAFT_0235at 241.776 kb on + strand, within B158DRAFT_0235at 241.776 kb on + strand, within B158DRAFT_0235at 241.776 kb on + strand, within B158DRAFT_0235at 241.776 kb on - strand, within B158DRAFT_0235at 241.784 kb on - strand, within B158DRAFT_0235at 241.792 kb on - strand, within B158DRAFT_0235at 241.799 kb on - strand, within B158DRAFT_0235at 241.809 kb on + strand, within B158DRAFT_0235at 241.852 kb on - strand, within B158DRAFT_0235at 241.918 kb on - strand, within B158DRAFT_0235at 241.918 kb on - strand, within B158DRAFT_0235at 241.918 kb on - strand, within B158DRAFT_0235at 241.926 kb on - strand, within B158DRAFT_0235at 241.928 kb on + strand, within B158DRAFT_0235at 241.936 kb on - strand, within B158DRAFT_0235at 241.966 kb on + strand, within B158DRAFT_0235at 241.966 kb on + strand, within B158DRAFT_0235at 241.966 kb on + strand, within B158DRAFT_0235at 241.966 kb on + strand, within B158DRAFT_0235at 241.966 kb on + strand, within B158DRAFT_0235at 241.966 kb on + strand, within B158DRAFT_0235at 241.966 kb on + strand, within B158DRAFT_0235at 241.974 kb on - strand, within B158DRAFT_0235at 241.974 kb on - strand, within B158DRAFT_0235at 241.974 kb on - strand, within B158DRAFT_0235at 241.974 kb on - strand, within B158DRAFT_0235at 241.974 kb on - strand, within B158DRAFT_0235at 242.134 kb on + strand, within B158DRAFT_0235at 242.176 kb on + strand, within B158DRAFT_0235at 242.186 kb on + strand, within B158DRAFT_0235at 242.186 kb on + strand, within B158DRAFT_0235at 242.194 kb on - strand, within B158DRAFT_0235at 242.957 kb on + strand, within B158DRAFT_0236at 242.989 kb on - strand, within B158DRAFT_0236at 243.084 kb on - strand, within B158DRAFT_0236at 243.111 kb on + strand, within B158DRAFT_0236at 243.111 kb on + strand, within B158DRAFT_0236at 243.186 kb on + strand, within B158DRAFT_0236at 243.186 kb on + strand, within B158DRAFT_0236at 243.194 kb on - strand, within B158DRAFT_0236at 243.293 kb on + strand, within B158DRAFT_0236

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrite 20 mM
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240,637 - B158DRAFT_0234 0.74 +3.1
240,639 + B158DRAFT_0234 0.74 +0.3
240,730 + B158DRAFT_0234 0.79 -0.9
240,730 + B158DRAFT_0234 0.79 -0.4
240,730 + B158DRAFT_0234 0.79 -0.8
240,738 - B158DRAFT_0234 0.79 +0.2
240,839 + B158DRAFT_0234 0.85 -2.8
240,847 - B158DRAFT_0234 0.85 -0.6
240,847 - B158DRAFT_0234 0.85 +0.3
240,847 - B158DRAFT_0234 0.85 -0.9
240,920 - B158DRAFT_0234 0.89 -0.4
240,935 - B158DRAFT_0234 0.90 -0.6
240,959 + -0.7
240,959 + +1.6
240,961 - -0.0
240,975 + -0.8
241,022 - -0.8
241,022 - +0.5
241,022 - -0.1
241,022 - -1.1
241,022 - -1.5
241,022 - -1.0
241,116 + -2.3
241,116 + +1.0
241,289 + +0.3
241,567 + -0.5
241,574 + -2.5
241,574 + +0.0
241,574 + -1.5
241,574 + -3.5
241,582 - -0.8
241,582 - -0.6
241,582 - -0.7
241,582 - -0.4
241,582 - -1.5
241,606 + B158DRAFT_0235 0.12 -1.3
241,614 - B158DRAFT_0235 0.13 +0.5
241,671 - B158DRAFT_0235 0.20 -0.3
241,671 - B158DRAFT_0235 0.20 -0.5
241,686 - B158DRAFT_0235 0.22 -0.5
241,707 - B158DRAFT_0235 0.24 -1.3
241,744 + B158DRAFT_0235 0.29 -1.7
241,744 + B158DRAFT_0235 0.29 -0.2
241,752 - B158DRAFT_0235 0.30 -0.6
241,752 - B158DRAFT_0235 0.30 -1.4
241,752 - B158DRAFT_0235 0.30 -1.6
241,752 - B158DRAFT_0235 0.30 -0.7
241,754 + B158DRAFT_0235 0.30 +0.3
241,759 + B158DRAFT_0235 0.31 -2.2
241,759 + B158DRAFT_0235 0.31 -0.5
241,762 - B158DRAFT_0235 0.31 -1.4
241,776 + B158DRAFT_0235 0.33 -0.2
241,776 + B158DRAFT_0235 0.33 -0.8
241,776 + B158DRAFT_0235 0.33 -0.8
241,776 + B158DRAFT_0235 0.33 -1.4
241,776 - B158DRAFT_0235 0.33 +1.6
241,784 - B158DRAFT_0235 0.34 -1.3
241,792 - B158DRAFT_0235 0.35 -1.3
241,799 - B158DRAFT_0235 0.36 -0.9
241,809 + B158DRAFT_0235 0.37 -0.4
241,852 - B158DRAFT_0235 0.43 +0.7
241,918 - B158DRAFT_0235 0.51 -1.0
241,918 - B158DRAFT_0235 0.51 -0.8
241,918 - B158DRAFT_0235 0.51 +2.1
241,926 - B158DRAFT_0235 0.52 +0.6
241,928 + B158DRAFT_0235 0.52 +1.7
241,936 - B158DRAFT_0235 0.53 -0.4
241,966 + B158DRAFT_0235 0.57 -1.0
241,966 + B158DRAFT_0235 0.57 -0.7
241,966 + B158DRAFT_0235 0.57 -1.0
241,966 + B158DRAFT_0235 0.57 -1.6
241,966 + B158DRAFT_0235 0.57 -1.0
241,966 + B158DRAFT_0235 0.57 -0.0
241,966 + B158DRAFT_0235 0.57 +0.3
241,974 - B158DRAFT_0235 0.58 +1.6
241,974 - B158DRAFT_0235 0.58 -0.6
241,974 - B158DRAFT_0235 0.58 -0.8
241,974 - B158DRAFT_0235 0.58 -0.7
241,974 - B158DRAFT_0235 0.58 +1.0
242,134 + B158DRAFT_0235 0.78 +2.4
242,176 + B158DRAFT_0235 0.83 +1.4
242,186 + B158DRAFT_0235 0.85 -0.7
242,186 + B158DRAFT_0235 0.85 +0.7
242,194 - B158DRAFT_0235 0.86 -0.4
242,957 + B158DRAFT_0236 0.15 -0.7
242,989 - B158DRAFT_0236 0.20 -1.6
243,084 - B158DRAFT_0236 0.35 -0.5
243,111 + B158DRAFT_0236 0.39 -2.1
243,111 + B158DRAFT_0236 0.39 +0.6
243,186 + B158DRAFT_0236 0.51 -0.7
243,186 + B158DRAFT_0236 0.51 +1.1
243,194 - B158DRAFT_0236 0.52 +1.1
243,293 + B158DRAFT_0236 0.68 +0.3

Or see this region's nucleotide sequence