Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0234

Experiment: m.b. nitrite 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_0233 and B158DRAFT_0234 are separated by 235 nucleotidesB158DRAFT_0234 and B158DRAFT_0235 are separated by 395 nucleotides B158DRAFT_0233: B158DRAFT_0233 - Subtilisin-like serine proteases, at 237,935 to 239,059 _0233 B158DRAFT_0234: B158DRAFT_0234 - Subtilisin-like serine proteases, at 239,295 to 241,118 _0234 B158DRAFT_0235: B158DRAFT_0235 - FOG: PKD repeat, at 241,514 to 242,306 _0235 Position (kb) 239 240 241 242Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 238.339 kb on - strand, within B158DRAFT_0233at 238.343 kb on - strand, within B158DRAFT_0233at 238.360 kb on - strand, within B158DRAFT_0233at 238.389 kb on - strand, within B158DRAFT_0233at 238.465 kb on - strand, within B158DRAFT_0233at 238.470 kb on - strand, within B158DRAFT_0233at 238.498 kb on - strand, within B158DRAFT_0233at 238.664 kb on + strand, within B158DRAFT_0233at 238.672 kb on - strand, within B158DRAFT_0233at 238.677 kb on + strand, within B158DRAFT_0233at 238.809 kb on + strand, within B158DRAFT_0233at 238.874 kb on + strand, within B158DRAFT_0233at 238.882 kb on + strand, within B158DRAFT_0233at 238.882 kb on + strand, within B158DRAFT_0233at 238.882 kb on + strand, within B158DRAFT_0233at 238.884 kb on + strand, within B158DRAFT_0233at 238.890 kb on - strand, within B158DRAFT_0233at 238.909 kb on - strand, within B158DRAFT_0233at 238.918 kb on + strand, within B158DRAFT_0233at 238.926 kb on - strand, within B158DRAFT_0233at 238.929 kb on + strand, within B158DRAFT_0233at 238.931 kb on - strand, within B158DRAFT_0233at 239.068 kb on + strandat 239.068 kb on - strandat 239.070 kb on - strandat 239.350 kb on + strandat 239.362 kb on - strandat 239.379 kb on + strandat 239.387 kb on - strandat 239.387 kb on - strandat 239.402 kb on + strandat 239.403 kb on - strandat 239.410 kb on - strandat 239.412 kb on + strandat 239.412 kb on + strandat 239.412 kb on + strandat 239.420 kb on + strandat 239.420 kb on + strandat 239.420 kb on - strandat 239.453 kb on + strandat 239.460 kb on - strandat 239.509 kb on - strand, within B158DRAFT_0234at 239.541 kb on - strand, within B158DRAFT_0234at 239.552 kb on + strand, within B158DRAFT_0234at 239.584 kb on - strand, within B158DRAFT_0234at 239.602 kb on + strand, within B158DRAFT_0234at 239.610 kb on - strand, within B158DRAFT_0234at 239.699 kb on + strand, within B158DRAFT_0234at 239.821 kb on + strand, within B158DRAFT_0234at 239.826 kb on + strand, within B158DRAFT_0234at 240.041 kb on + strand, within B158DRAFT_0234at 240.041 kb on + strand, within B158DRAFT_0234at 240.041 kb on + strand, within B158DRAFT_0234at 240.049 kb on - strand, within B158DRAFT_0234at 240.049 kb on - strand, within B158DRAFT_0234at 240.049 kb on - strand, within B158DRAFT_0234at 240.057 kb on + strand, within B158DRAFT_0234at 240.118 kb on - strand, within B158DRAFT_0234at 240.118 kb on - strand, within B158DRAFT_0234at 240.171 kb on - strand, within B158DRAFT_0234at 240.180 kb on - strand, within B158DRAFT_0234at 240.187 kb on + strand, within B158DRAFT_0234at 240.272 kb on + strand, within B158DRAFT_0234at 240.294 kb on - strand, within B158DRAFT_0234at 240.379 kb on + strand, within B158DRAFT_0234at 240.379 kb on + strand, within B158DRAFT_0234at 240.425 kb on + strand, within B158DRAFT_0234at 240.433 kb on - strand, within B158DRAFT_0234at 240.433 kb on - strand, within B158DRAFT_0234at 240.434 kb on + strand, within B158DRAFT_0234at 240.470 kb on + strand, within B158DRAFT_0234at 240.471 kb on + strand, within B158DRAFT_0234at 240.471 kb on - strand, within B158DRAFT_0234at 240.471 kb on - strand, within B158DRAFT_0234at 240.471 kb on - strand, within B158DRAFT_0234at 240.475 kb on + strand, within B158DRAFT_0234at 240.479 kb on - strand, within B158DRAFT_0234at 240.510 kb on - strand, within B158DRAFT_0234at 240.637 kb on - strand, within B158DRAFT_0234at 240.639 kb on + strand, within B158DRAFT_0234at 240.730 kb on + strand, within B158DRAFT_0234at 240.730 kb on + strand, within B158DRAFT_0234at 240.730 kb on + strand, within B158DRAFT_0234at 240.738 kb on - strand, within B158DRAFT_0234at 240.839 kb on + strand, within B158DRAFT_0234at 240.847 kb on - strand, within B158DRAFT_0234at 240.847 kb on - strand, within B158DRAFT_0234at 240.847 kb on - strand, within B158DRAFT_0234at 240.920 kb on - strand, within B158DRAFT_0234at 240.935 kb on - strand, within B158DRAFT_0234at 240.959 kb on + strandat 240.959 kb on + strandat 240.961 kb on - strandat 240.975 kb on + strandat 241.022 kb on - strandat 241.022 kb on - strandat 241.022 kb on - strandat 241.022 kb on - strandat 241.022 kb on - strandat 241.022 kb on - strandat 241.116 kb on + strandat 241.116 kb on + strandat 241.289 kb on + strandat 241.567 kb on + strandat 241.574 kb on + strandat 241.574 kb on + strandat 241.574 kb on + strandat 241.574 kb on + strandat 241.582 kb on - strandat 241.582 kb on - strandat 241.582 kb on - strandat 241.582 kb on - strandat 241.582 kb on - strandat 241.606 kb on + strand, within B158DRAFT_0235at 241.614 kb on - strand, within B158DRAFT_0235at 241.671 kb on - strand, within B158DRAFT_0235at 241.671 kb on - strand, within B158DRAFT_0235at 241.686 kb on - strand, within B158DRAFT_0235at 241.707 kb on - strand, within B158DRAFT_0235at 241.744 kb on + strand, within B158DRAFT_0235at 241.744 kb on + strand, within B158DRAFT_0235at 241.752 kb on - strand, within B158DRAFT_0235at 241.752 kb on - strand, within B158DRAFT_0235at 241.752 kb on - strand, within B158DRAFT_0235at 241.752 kb on - strand, within B158DRAFT_0235at 241.754 kb on + strand, within B158DRAFT_0235at 241.759 kb on + strand, within B158DRAFT_0235at 241.759 kb on + strand, within B158DRAFT_0235at 241.762 kb on - strand, within B158DRAFT_0235at 241.776 kb on + strand, within B158DRAFT_0235at 241.776 kb on + strand, within B158DRAFT_0235at 241.776 kb on + strand, within B158DRAFT_0235at 241.776 kb on + strand, within B158DRAFT_0235at 241.776 kb on - strand, within B158DRAFT_0235at 241.784 kb on - strand, within B158DRAFT_0235at 241.792 kb on - strand, within B158DRAFT_0235at 241.799 kb on - strand, within B158DRAFT_0235at 241.809 kb on + strand, within B158DRAFT_0235at 241.852 kb on - strand, within B158DRAFT_0235at 241.918 kb on - strand, within B158DRAFT_0235at 241.918 kb on - strand, within B158DRAFT_0235at 241.918 kb on - strand, within B158DRAFT_0235at 241.926 kb on - strand, within B158DRAFT_0235at 241.928 kb on + strand, within B158DRAFT_0235at 241.936 kb on - strand, within B158DRAFT_0235at 241.966 kb on + strand, within B158DRAFT_0235at 241.966 kb on + strand, within B158DRAFT_0235at 241.966 kb on + strand, within B158DRAFT_0235at 241.966 kb on + strand, within B158DRAFT_0235at 241.966 kb on + strand, within B158DRAFT_0235at 241.966 kb on + strand, within B158DRAFT_0235at 241.966 kb on + strand, within B158DRAFT_0235at 241.974 kb on - strand, within B158DRAFT_0235at 241.974 kb on - strand, within B158DRAFT_0235at 241.974 kb on - strand, within B158DRAFT_0235at 241.974 kb on - strand, within B158DRAFT_0235at 241.974 kb on - strand, within B158DRAFT_0235

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrite 20 mM
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238,339 - B158DRAFT_0233 0.36 -1.2
238,343 - B158DRAFT_0233 0.36 -0.6
238,360 - B158DRAFT_0233 0.38 +1.6
238,389 - B158DRAFT_0233 0.40 +0.7
238,465 - B158DRAFT_0233 0.47 -0.1
238,470 - B158DRAFT_0233 0.48 -2.5
238,498 - B158DRAFT_0233 0.50 -1.6
238,664 + B158DRAFT_0233 0.65 +0.7
238,672 - B158DRAFT_0233 0.66 -1.6
238,677 + B158DRAFT_0233 0.66 -0.3
238,809 + B158DRAFT_0233 0.78 +0.8
238,874 + B158DRAFT_0233 0.83 +0.1
238,882 + B158DRAFT_0233 0.84 +0.5
238,882 + B158DRAFT_0233 0.84 +0.9
238,882 + B158DRAFT_0233 0.84 -0.4
238,884 + B158DRAFT_0233 0.84 +0.6
238,890 - B158DRAFT_0233 0.85 -0.3
238,909 - B158DRAFT_0233 0.87 -0.0
238,918 + B158DRAFT_0233 0.87 -0.2
238,926 - B158DRAFT_0233 0.88 +0.6
238,929 + B158DRAFT_0233 0.88 +1.5
238,931 - B158DRAFT_0233 0.89 -1.1
239,068 + -1.7
239,068 - -1.8
239,070 - +2.5
239,350 + -0.7
239,362 - -0.2
239,379 + -0.2
239,387 - +1.4
239,387 - -0.6
239,402 + -0.4
239,403 - -1.8
239,410 - -1.5
239,412 + -0.7
239,412 + +0.1
239,412 + -1.0
239,420 + -0.2
239,420 + -2.0
239,420 - -0.7
239,453 + -2.3
239,460 - -1.5
239,509 - B158DRAFT_0234 0.12 -1.0
239,541 - B158DRAFT_0234 0.13 -0.9
239,552 + B158DRAFT_0234 0.14 -0.3
239,584 - B158DRAFT_0234 0.16 +0.0
239,602 + B158DRAFT_0234 0.17 +0.1
239,610 - B158DRAFT_0234 0.17 -2.1
239,699 + B158DRAFT_0234 0.22 -1.2
239,821 + B158DRAFT_0234 0.29 -1.0
239,826 + B158DRAFT_0234 0.29 +1.1
240,041 + B158DRAFT_0234 0.41 +0.3
240,041 + B158DRAFT_0234 0.41 -2.6
240,041 + B158DRAFT_0234 0.41 -2.1
240,049 - B158DRAFT_0234 0.41 -1.2
240,049 - B158DRAFT_0234 0.41 -1.9
240,049 - B158DRAFT_0234 0.41 +0.8
240,057 + B158DRAFT_0234 0.42 -1.4
240,118 - B158DRAFT_0234 0.45 -0.6
240,118 - B158DRAFT_0234 0.45 +0.9
240,171 - B158DRAFT_0234 0.48 -0.5
240,180 - B158DRAFT_0234 0.49 -1.0
240,187 + B158DRAFT_0234 0.49 -1.8
240,272 + B158DRAFT_0234 0.54 -3.4
240,294 - B158DRAFT_0234 0.55 -0.1
240,379 + B158DRAFT_0234 0.59 -0.4
240,379 + B158DRAFT_0234 0.59 -1.5
240,425 + B158DRAFT_0234 0.62 +0.5
240,433 - B158DRAFT_0234 0.62 -0.2
240,433 - B158DRAFT_0234 0.62 -0.4
240,434 + B158DRAFT_0234 0.62 -1.7
240,470 + B158DRAFT_0234 0.64 +0.2
240,471 + B158DRAFT_0234 0.64 +0.3
240,471 - B158DRAFT_0234 0.64 -0.9
240,471 - B158DRAFT_0234 0.64 +1.0
240,471 - B158DRAFT_0234 0.64 -0.5
240,475 + B158DRAFT_0234 0.65 -1.5
240,479 - B158DRAFT_0234 0.65 +1.6
240,510 - B158DRAFT_0234 0.67 -2.4
240,637 - B158DRAFT_0234 0.74 +3.1
240,639 + B158DRAFT_0234 0.74 +0.3
240,730 + B158DRAFT_0234 0.79 -0.9
240,730 + B158DRAFT_0234 0.79 -0.4
240,730 + B158DRAFT_0234 0.79 -0.8
240,738 - B158DRAFT_0234 0.79 +0.2
240,839 + B158DRAFT_0234 0.85 -2.8
240,847 - B158DRAFT_0234 0.85 -0.6
240,847 - B158DRAFT_0234 0.85 +0.3
240,847 - B158DRAFT_0234 0.85 -0.9
240,920 - B158DRAFT_0234 0.89 -0.4
240,935 - B158DRAFT_0234 0.90 -0.6
240,959 + -0.7
240,959 + +1.6
240,961 - -0.0
240,975 + -0.8
241,022 - -0.8
241,022 - +0.5
241,022 - -0.1
241,022 - -1.1
241,022 - -1.5
241,022 - -1.0
241,116 + -2.3
241,116 + +1.0
241,289 + +0.3
241,567 + -0.5
241,574 + -2.5
241,574 + +0.0
241,574 + -1.5
241,574 + -3.5
241,582 - -0.8
241,582 - -0.6
241,582 - -0.7
241,582 - -0.4
241,582 - -1.5
241,606 + B158DRAFT_0235 0.12 -1.3
241,614 - B158DRAFT_0235 0.13 +0.5
241,671 - B158DRAFT_0235 0.20 -0.3
241,671 - B158DRAFT_0235 0.20 -0.5
241,686 - B158DRAFT_0235 0.22 -0.5
241,707 - B158DRAFT_0235 0.24 -1.3
241,744 + B158DRAFT_0235 0.29 -1.7
241,744 + B158DRAFT_0235 0.29 -0.2
241,752 - B158DRAFT_0235 0.30 -0.6
241,752 - B158DRAFT_0235 0.30 -1.4
241,752 - B158DRAFT_0235 0.30 -1.6
241,752 - B158DRAFT_0235 0.30 -0.7
241,754 + B158DRAFT_0235 0.30 +0.3
241,759 + B158DRAFT_0235 0.31 -2.2
241,759 + B158DRAFT_0235 0.31 -0.5
241,762 - B158DRAFT_0235 0.31 -1.4
241,776 + B158DRAFT_0235 0.33 -0.2
241,776 + B158DRAFT_0235 0.33 -0.8
241,776 + B158DRAFT_0235 0.33 -0.8
241,776 + B158DRAFT_0235 0.33 -1.4
241,776 - B158DRAFT_0235 0.33 +1.6
241,784 - B158DRAFT_0235 0.34 -1.3
241,792 - B158DRAFT_0235 0.35 -1.3
241,799 - B158DRAFT_0235 0.36 -0.9
241,809 + B158DRAFT_0235 0.37 -0.4
241,852 - B158DRAFT_0235 0.43 +0.7
241,918 - B158DRAFT_0235 0.51 -1.0
241,918 - B158DRAFT_0235 0.51 -0.8
241,918 - B158DRAFT_0235 0.51 +2.1
241,926 - B158DRAFT_0235 0.52 +0.6
241,928 + B158DRAFT_0235 0.52 +1.7
241,936 - B158DRAFT_0235 0.53 -0.4
241,966 + B158DRAFT_0235 0.57 -1.0
241,966 + B158DRAFT_0235 0.57 -0.7
241,966 + B158DRAFT_0235 0.57 -1.0
241,966 + B158DRAFT_0235 0.57 -1.6
241,966 + B158DRAFT_0235 0.57 -1.0
241,966 + B158DRAFT_0235 0.57 -0.0
241,966 + B158DRAFT_0235 0.57 +0.3
241,974 - B158DRAFT_0235 0.58 +1.6
241,974 - B158DRAFT_0235 0.58 -0.6
241,974 - B158DRAFT_0235 0.58 -0.8
241,974 - B158DRAFT_0235 0.58 -0.7
241,974 - B158DRAFT_0235 0.58 +1.0

Or see this region's nucleotide sequence