Experiment: m.b. nitrite 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_0137 and B158DRAFT_0138 are separated by 196 nucleotides B158DRAFT_0138 and B158DRAFT_0139 overlap by 4 nucleotides B158DRAFT_0139 and B158DRAFT_0140 are separated by 26 nucleotides
B158DRAFT_0137: B158DRAFT_0137 - cytochrome c oxidase, subunit II, at 135,075 to 136,244
_0137
B158DRAFT_0138: B158DRAFT_0138 - hypothetical protein, at 136,441 to 137,190
_0138
B158DRAFT_0139: B158DRAFT_0139 - RNA polymerase sigma factor, sigma-70 family, at 137,187 to 137,876
_0139
B158DRAFT_0140: B158DRAFT_0140 - Uncharacterized protein containing a von Willebrand factor type A (vWA) domain, at 137,903 to 139,648
_0140
Position (kb) 136
137
138 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 135.509 kb on - strand, within B158DRAFT_0137 at 135.519 kb on - strand, within B158DRAFT_0137 at 135.521 kb on + strand, within B158DRAFT_0137 at 135.521 kb on + strand, within B158DRAFT_0137 at 135.521 kb on + strand, within B158DRAFT_0137 at 135.521 kb on + strand, within B158DRAFT_0137 at 135.524 kb on - strand, within B158DRAFT_0137 at 135.529 kb on - strand, within B158DRAFT_0137 at 135.529 kb on - strand, within B158DRAFT_0137 at 135.529 kb on - strand, within B158DRAFT_0137 at 135.529 kb on - strand, within B158DRAFT_0137 at 135.642 kb on + strand, within B158DRAFT_0137 at 135.643 kb on - strand, within B158DRAFT_0137 at 135.644 kb on + strand, within B158DRAFT_0137 at 135.649 kb on + strand, within B158DRAFT_0137 at 135.650 kb on - strand, within B158DRAFT_0137 at 135.887 kb on + strand, within B158DRAFT_0137 at 135.999 kb on - strand, within B158DRAFT_0137 at 136.071 kb on + strand, within B158DRAFT_0137 at 136.079 kb on - strand, within B158DRAFT_0137 at 136.079 kb on - strand, within B158DRAFT_0137 at 136.137 kb on + strand at 136.169 kb on + strand at 136.185 kb on + strand at 136.191 kb on + strand at 136.193 kb on - strand at 136.255 kb on + strand at 136.298 kb on + strand at 136.511 kb on + strand at 136.568 kb on + strand, within B158DRAFT_0138 at 136.570 kb on - strand, within B158DRAFT_0138 at 136.592 kb on + strand, within B158DRAFT_0138 at 136.623 kb on - strand, within B158DRAFT_0138 at 136.625 kb on + strand, within B158DRAFT_0138 at 136.630 kb on + strand, within B158DRAFT_0138 at 136.630 kb on + strand, within B158DRAFT_0138 at 136.633 kb on - strand, within B158DRAFT_0138 at 136.633 kb on - strand, within B158DRAFT_0138 at 136.691 kb on + strand, within B158DRAFT_0138 at 136.699 kb on - strand, within B158DRAFT_0138 at 136.699 kb on - strand, within B158DRAFT_0138 at 136.699 kb on - strand, within B158DRAFT_0138 at 136.699 kb on - strand, within B158DRAFT_0138 at 136.753 kb on + strand, within B158DRAFT_0138 at 136.768 kb on + strand, within B158DRAFT_0138 at 136.790 kb on - strand, within B158DRAFT_0138 at 136.797 kb on - strand, within B158DRAFT_0138 at 136.837 kb on + strand, within B158DRAFT_0138 at 136.845 kb on - strand, within B158DRAFT_0138 at 136.877 kb on - strand, within B158DRAFT_0138 at 136.909 kb on + strand, within B158DRAFT_0138 at 137.008 kb on - strand, within B158DRAFT_0138 at 137.010 kb on + strand, within B158DRAFT_0138 at 137.028 kb on + strand, within B158DRAFT_0138 at 137.042 kb on - strand, within B158DRAFT_0138 at 137.109 kb on + strand, within B158DRAFT_0138 at 137.240 kb on + strand at 137.245 kb on - strand at 137.272 kb on + strand, within B158DRAFT_0139 at 137.272 kb on + strand, within B158DRAFT_0139 at 137.272 kb on + strand, within B158DRAFT_0139 at 137.272 kb on + strand, within B158DRAFT_0139 at 137.272 kb on + strand, within B158DRAFT_0139 at 137.272 kb on + strand, within B158DRAFT_0139 at 137.272 kb on + strand, within B158DRAFT_0139 at 137.279 kb on + strand, within B158DRAFT_0139 at 137.280 kb on - strand, within B158DRAFT_0139 at 137.280 kb on - strand, within B158DRAFT_0139 at 137.280 kb on - strand, within B158DRAFT_0139 at 137.280 kb on - strand, within B158DRAFT_0139 at 137.280 kb on - strand, within B158DRAFT_0139 at 137.280 kb on - strand, within B158DRAFT_0139 at 137.280 kb on - strand, within B158DRAFT_0139 at 137.280 kb on - strand, within B158DRAFT_0139 at 137.280 kb on - strand, within B158DRAFT_0139 at 137.280 kb on - strand, within B158DRAFT_0139 at 137.280 kb on - strand, within B158DRAFT_0139 at 137.280 kb on - strand, within B158DRAFT_0139 at 137.280 kb on - strand, within B158DRAFT_0139 at 137.280 kb on - strand, within B158DRAFT_0139 at 137.280 kb on - strand, within B158DRAFT_0139 at 137.280 kb on - strand, within B158DRAFT_0139 at 137.298 kb on + strand, within B158DRAFT_0139 at 137.351 kb on - strand, within B158DRAFT_0139 at 137.482 kb on + strand, within B158DRAFT_0139 at 137.482 kb on + strand, within B158DRAFT_0139 at 137.482 kb on + strand, within B158DRAFT_0139 at 137.490 kb on - strand, within B158DRAFT_0139 at 137.490 kb on - strand, within B158DRAFT_0139 at 137.490 kb on - strand, within B158DRAFT_0139 at 137.490 kb on - strand, within B158DRAFT_0139 at 137.490 kb on - strand, within B158DRAFT_0139 at 137.490 kb on - strand, within B158DRAFT_0139 at 137.490 kb on - strand, within B158DRAFT_0139 at 137.490 kb on - strand, within B158DRAFT_0139 at 137.490 kb on - strand, within B158DRAFT_0139 at 137.550 kb on - strand, within B158DRAFT_0139 at 137.567 kb on - strand, within B158DRAFT_0139 at 137.567 kb on - strand, within B158DRAFT_0139 at 137.578 kb on + strand, within B158DRAFT_0139 at 137.596 kb on - strand, within B158DRAFT_0139 at 137.690 kb on + strand, within B158DRAFT_0139 at 137.711 kb on - strand, within B158DRAFT_0139 at 137.726 kb on + strand, within B158DRAFT_0139 at 137.743 kb on - strand, within B158DRAFT_0139 at 137.772 kb on - strand, within B158DRAFT_0139 at 137.800 kb on + strand, within B158DRAFT_0139 at 137.800 kb on + strand, within B158DRAFT_0139 at 137.800 kb on + strand, within B158DRAFT_0139 at 137.808 kb on - strand at 137.808 kb on - strand at 137.808 kb on - strand at 137.810 kb on + strand at 137.905 kb on + strand at 137.910 kb on + strand at 137.910 kb on + strand at 137.910 kb on + strand at 137.918 kb on - strand at 137.923 kb on - strand at 137.923 kb on - strand at 137.931 kb on + strand at 137.939 kb on - strand at 137.942 kb on - strand at 137.942 kb on - strand at 138.009 kb on + strand at 138.009 kb on + strand at 138.017 kb on + strand at 138.017 kb on - strand at 138.025 kb on - strand at 138.035 kb on + strand at 138.069 kb on - strand at 138.069 kb on - strand at 138.094 kb on + strand, within B158DRAFT_0140 at 138.102 kb on - strand, within B158DRAFT_0140 at 138.102 kb on - strand, within B158DRAFT_0140 at 138.123 kb on - strand, within B158DRAFT_0140 at 138.141 kb on + strand, within B158DRAFT_0140 at 138.168 kb on - strand, within B158DRAFT_0140
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 20 mM remove 135,509 - B158DRAFT_0137 0.37 +0.2 135,519 - B158DRAFT_0137 0.38 +0.7 135,521 + B158DRAFT_0137 0.38 +0.5 135,521 + B158DRAFT_0137 0.38 +0.3 135,521 + B158DRAFT_0137 0.38 -0.2 135,521 + B158DRAFT_0137 0.38 -0.8 135,524 - B158DRAFT_0137 0.38 -0.3 135,529 - B158DRAFT_0137 0.39 -1.8 135,529 - B158DRAFT_0137 0.39 -2.1 135,529 - B158DRAFT_0137 0.39 -0.0 135,529 - B158DRAFT_0137 0.39 +1.0 135,642 + B158DRAFT_0137 0.48 -1.2 135,643 - B158DRAFT_0137 0.49 -1.1 135,644 + B158DRAFT_0137 0.49 +2.2 135,649 + B158DRAFT_0137 0.49 +2.6 135,650 - B158DRAFT_0137 0.49 +0.5 135,887 + B158DRAFT_0137 0.69 +0.5 135,999 - B158DRAFT_0137 0.79 -0.6 136,071 + B158DRAFT_0137 0.85 -0.1 136,079 - B158DRAFT_0137 0.86 +3.9 136,079 - B158DRAFT_0137 0.86 +0.3 136,137 + +0.0 136,169 + +1.3 136,185 + +1.3 136,191 + +0.3 136,193 - +0.0 136,255 + +0.0 136,298 + +1.9 136,511 + +2.2 136,568 + B158DRAFT_0138 0.17 +3.1 136,570 - B158DRAFT_0138 0.17 -0.4 136,592 + B158DRAFT_0138 0.20 -0.4 136,623 - B158DRAFT_0138 0.24 +3.8 136,625 + B158DRAFT_0138 0.25 +0.6 136,630 + B158DRAFT_0138 0.25 -1.4 136,630 + B158DRAFT_0138 0.25 -0.8 136,633 - B158DRAFT_0138 0.26 -0.7 136,633 - B158DRAFT_0138 0.26 -0.6 136,691 + B158DRAFT_0138 0.33 +3.3 136,699 - B158DRAFT_0138 0.34 +4.6 136,699 - B158DRAFT_0138 0.34 +4.1 136,699 - B158DRAFT_0138 0.34 +3.5 136,699 - B158DRAFT_0138 0.34 +3.9 136,753 + B158DRAFT_0138 0.42 +4.2 136,768 + B158DRAFT_0138 0.44 +3.1 136,790 - B158DRAFT_0138 0.47 +0.9 136,797 - B158DRAFT_0138 0.47 +1.6 136,837 + B158DRAFT_0138 0.53 +1.3 136,845 - B158DRAFT_0138 0.54 +1.6 136,877 - B158DRAFT_0138 0.58 +1.4 136,909 + B158DRAFT_0138 0.62 +1.8 137,008 - B158DRAFT_0138 0.76 -0.0 137,010 + B158DRAFT_0138 0.76 +5.5 137,028 + B158DRAFT_0138 0.78 +3.6 137,042 - B158DRAFT_0138 0.80 +2.3 137,109 + B158DRAFT_0138 0.89 -1.0 137,240 + +0.4 137,245 - -0.6 137,272 + B158DRAFT_0139 0.12 -1.5 137,272 + B158DRAFT_0139 0.12 -1.5 137,272 + B158DRAFT_0139 0.12 -0.2 137,272 + B158DRAFT_0139 0.12 -2.2 137,272 + B158DRAFT_0139 0.12 +0.8 137,272 + B158DRAFT_0139 0.12 -0.5 137,272 + B158DRAFT_0139 0.12 +0.2 137,279 + B158DRAFT_0139 0.13 -0.3 137,280 - B158DRAFT_0139 0.13 -2.2 137,280 - B158DRAFT_0139 0.13 -0.1 137,280 - B158DRAFT_0139 0.13 -2.1 137,280 - B158DRAFT_0139 0.13 +0.0 137,280 - B158DRAFT_0139 0.13 -0.4 137,280 - B158DRAFT_0139 0.13 -1.1 137,280 - B158DRAFT_0139 0.13 -0.5 137,280 - B158DRAFT_0139 0.13 +0.7 137,280 - B158DRAFT_0139 0.13 -0.2 137,280 - B158DRAFT_0139 0.13 -1.7 137,280 - B158DRAFT_0139 0.13 -1.5 137,280 - B158DRAFT_0139 0.13 +0.5 137,280 - B158DRAFT_0139 0.13 -2.1 137,280 - B158DRAFT_0139 0.13 -0.8 137,280 - B158DRAFT_0139 0.13 -0.8 137,280 - B158DRAFT_0139 0.13 -0.7 137,298 + B158DRAFT_0139 0.16 +0.3 137,351 - B158DRAFT_0139 0.24 +0.1 137,482 + B158DRAFT_0139 0.43 -0.4 137,482 + B158DRAFT_0139 0.43 +0.1 137,482 + B158DRAFT_0139 0.43 +0.9 137,490 - B158DRAFT_0139 0.44 +0.8 137,490 - B158DRAFT_0139 0.44 +0.7 137,490 - B158DRAFT_0139 0.44 -1.7 137,490 - B158DRAFT_0139 0.44 -0.0 137,490 - B158DRAFT_0139 0.44 +0.2 137,490 - B158DRAFT_0139 0.44 -0.8 137,490 - B158DRAFT_0139 0.44 -1.7 137,490 - B158DRAFT_0139 0.44 -0.1 137,490 - B158DRAFT_0139 0.44 +0.5 137,550 - B158DRAFT_0139 0.53 -1.3 137,567 - B158DRAFT_0139 0.55 -2.1 137,567 - B158DRAFT_0139 0.55 -0.7 137,578 + B158DRAFT_0139 0.57 +0.4 137,596 - B158DRAFT_0139 0.59 -0.2 137,690 + B158DRAFT_0139 0.73 +0.7 137,711 - B158DRAFT_0139 0.76 +1.6 137,726 + B158DRAFT_0139 0.78 -0.8 137,743 - B158DRAFT_0139 0.81 -1.3 137,772 - B158DRAFT_0139 0.85 +3.7 137,800 + B158DRAFT_0139 0.89 -2.2 137,800 + B158DRAFT_0139 0.89 +0.3 137,800 + B158DRAFT_0139 0.89 -1.3 137,808 - +2.4 137,808 - -0.3 137,808 - +1.1 137,810 + -1.6 137,905 + +0.1 137,910 + -1.3 137,910 + -1.1 137,910 + -0.8 137,918 - -1.5 137,923 - +0.8 137,923 - -1.0 137,931 + +0.3 137,939 - -0.4 137,942 - +0.4 137,942 - -0.5 138,009 + -0.1 138,009 + -1.3 138,017 + -1.4 138,017 - +0.2 138,025 - -0.2 138,035 + -1.0 138,069 - -0.2 138,069 - -0.5 138,094 + B158DRAFT_0140 0.11 +1.1 138,102 - B158DRAFT_0140 0.11 -1.7 138,102 - B158DRAFT_0140 0.11 +1.0 138,123 - B158DRAFT_0140 0.13 -1.1 138,141 + B158DRAFT_0140 0.14 -0.0 138,168 - B158DRAFT_0140 0.15 -0.3
Or see this region's nucleotide sequence