Experiment: Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3314 and Atu3315 overlap by 4 nucleotides Atu3315 and Atu3316 are separated by 1 nucleotides Atu3316 and Atu3317 are separated by 394 nucleotides Atu3317 and Atu3318 are separated by 59 nucleotides
Atu3314: Atu3314 - cellulose synthase, at 344,599 to 346,536
Atu3314
Atu3315: Atu3315 - UDP-glucose 4-epimerase, at 346,533 to 347,516
Atu3315
Atu3316: Atu3316 - dTDP-glucose 4-6-dehydratase, at 347,518 to 348,540
Atu3316
Atu3317: Atu3317 - hypothetical protein, at 348,935 to 349,285
Atu3317
Atu3318: Atu3318 - LuxR family transcriptional regulator, at 349,345 to 350,115
Atu3318
Position (kb) 347
348
349 Strain fitness (log2 ratio) -1
0
1
2 at 346.539 kb on - strand at 346.625 kb on - strand at 346.625 kb on - strand at 346.630 kb on + strand at 346.632 kb on + strand, within Atu3315 at 346.829 kb on + strand, within Atu3315 at 346.950 kb on + strand, within Atu3315 at 346.950 kb on + strand, within Atu3315 at 347.055 kb on - strand, within Atu3315 at 347.098 kb on - strand, within Atu3315 at 347.195 kb on + strand, within Atu3315 at 347.286 kb on - strand, within Atu3315 at 347.308 kb on - strand, within Atu3315 at 347.466 kb on - strand at 347.519 kb on + strand at 347.665 kb on + strand, within Atu3316 at 347.783 kb on - strand, within Atu3316 at 347.795 kb on - strand, within Atu3316 at 347.949 kb on + strand, within Atu3316 at 347.949 kb on + strand, within Atu3316 at 347.957 kb on - strand, within Atu3316 at 347.957 kb on - strand, within Atu3316 at 348.001 kb on - strand, within Atu3316 at 348.144 kb on + strand, within Atu3316 at 348.152 kb on - strand, within Atu3316 at 348.213 kb on - strand, within Atu3316 at 348.238 kb on + strand, within Atu3316 at 348.289 kb on + strand, within Atu3316 at 348.289 kb on + strand, within Atu3316 at 348.499 kb on - strand at 348.550 kb on - strand at 348.869 kb on + strand at 348.877 kb on - strand at 348.891 kb on - strand at 348.921 kb on - strand at 349.034 kb on + strand, within Atu3317 at 349.074 kb on - strand, within Atu3317 at 349.134 kb on - strand, within Atu3317 at 349.134 kb on - strand, within Atu3317 at 349.207 kb on + strand, within Atu3317 at 349.234 kb on - strand, within Atu3317 at 349.234 kb on - strand, within Atu3317 at 349.457 kb on - strand, within Atu3318 at 349.462 kb on - strand, within Atu3318 at 349.496 kb on + strand, within Atu3318 at 349.531 kb on + strand, within Atu3318 at 349.539 kb on - strand, within Atu3318
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 346,539 - -0.0 346,625 - -0.2 346,625 - -0.0 346,630 + +1.8 346,632 + Atu3315 0.10 -0.5 346,829 + Atu3315 0.30 +0.2 346,950 + Atu3315 0.42 +0.6 346,950 + Atu3315 0.42 +0.9 347,055 - Atu3315 0.53 +1.5 347,098 - Atu3315 0.57 +1.8 347,195 + Atu3315 0.67 +1.1 347,286 - Atu3315 0.77 -0.7 347,308 - Atu3315 0.79 +0.7 347,466 - +0.8 347,519 + +0.2 347,665 + Atu3316 0.14 -0.3 347,783 - Atu3316 0.26 +0.1 347,795 - Atu3316 0.27 -0.0 347,949 + Atu3316 0.42 +0.7 347,949 + Atu3316 0.42 -0.2 347,957 - Atu3316 0.43 +0.1 347,957 - Atu3316 0.43 -1.4 348,001 - Atu3316 0.47 +0.0 348,144 + Atu3316 0.61 -0.5 348,152 - Atu3316 0.62 -0.3 348,213 - Atu3316 0.68 +1.3 348,238 + Atu3316 0.70 -0.4 348,289 + Atu3316 0.75 -0.1 348,289 + Atu3316 0.75 -0.0 348,499 - +1.1 348,550 - +0.6 348,869 + -0.9 348,877 - +0.3 348,891 - +0.7 348,921 - -0.0 349,034 + Atu3317 0.28 -0.5 349,074 - Atu3317 0.40 +0.3 349,134 - Atu3317 0.57 -1.2 349,134 - Atu3317 0.57 +0.0 349,207 + Atu3317 0.77 +0.2 349,234 - Atu3317 0.85 +2.5 349,234 - Atu3317 0.85 +0.3 349,457 - Atu3318 0.15 -0.3 349,462 - Atu3318 0.15 -0.6 349,496 + Atu3318 0.20 +0.9 349,531 + Atu3318 0.24 -0.3 349,539 - Atu3318 0.25 -0.1
Or see this region's nucleotide sequence