Experiment: Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0962 and Atu8141 are separated by 334 nucleotides Atu8141 and Atu0964 are separated by 60 nucleotides Atu0964 and Atu0965 overlap by 4 nucleotides
Atu0962: Atu0962 - hypothetical protein, at 950,974 to 951,378
Atu0962
Atu8141: Atu8141 - hypothetical protein, at 951,713 to 952,294
Atu8141
Atu0964: Atu0964 - hypothetical protein, at 952,355 to 952,993
Atu0964
Atu0965: Atu0965 - hypothetical protein, at 952,990 to 953,874
Atu0965
Position (kb) 951
952
953 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 950.740 kb on - strand at 950.756 kb on - strand at 950.916 kb on + strand at 950.924 kb on - strand at 950.924 kb on - strand at 950.924 kb on - strand at 950.924 kb on - strand at 950.931 kb on + strand at 951.027 kb on - strand, within Atu0962 at 951.037 kb on - strand, within Atu0962 at 951.054 kb on - strand, within Atu0962 at 951.056 kb on + strand, within Atu0962 at 951.056 kb on + strand, within Atu0962 at 951.056 kb on + strand, within Atu0962 at 951.064 kb on - strand, within Atu0962 at 951.116 kb on - strand, within Atu0962 at 951.145 kb on + strand, within Atu0962 at 951.145 kb on + strand, within Atu0962 at 951.186 kb on + strand, within Atu0962 at 951.210 kb on - strand, within Atu0962 at 951.253 kb on - strand, within Atu0962 at 951.289 kb on - strand, within Atu0962 at 951.332 kb on - strand, within Atu0962 at 951.332 kb on - strand, within Atu0962 at 951.377 kb on - strand at 951.406 kb on + strand at 951.447 kb on + strand at 951.503 kb on + strand at 951.503 kb on + strand at 951.504 kb on + strand at 951.529 kb on - strand at 951.549 kb on + strand at 951.583 kb on + strand at 951.641 kb on - strand at 951.810 kb on - strand, within Atu8141 at 951.810 kb on - strand, within Atu8141 at 951.810 kb on - strand, within Atu8141 at 951.812 kb on + strand, within Atu8141 at 951.820 kb on - strand, within Atu8141 at 951.862 kb on - strand, within Atu8141 at 951.959 kb on + strand, within Atu8141 at 952.036 kb on + strand, within Atu8141 at 952.041 kb on + strand, within Atu8141 at 952.044 kb on - strand, within Atu8141 at 952.088 kb on - strand, within Atu8141 at 952.098 kb on - strand, within Atu8141 at 952.145 kb on + strand, within Atu8141 at 952.163 kb on + strand, within Atu8141 at 952.171 kb on - strand, within Atu8141 at 952.248 kb on + strand at 952.315 kb on + strand at 952.322 kb on - strand at 952.328 kb on - strand at 952.469 kb on - strand, within Atu0964 at 952.573 kb on + strand, within Atu0964 at 952.573 kb on + strand, within Atu0964 at 952.573 kb on + strand, within Atu0964 at 952.694 kb on + strand, within Atu0964 at 952.701 kb on - strand, within Atu0964 at 952.702 kb on - strand, within Atu0964 at 952.754 kb on + strand, within Atu0964 at 952.788 kb on - strand, within Atu0964 at 952.837 kb on - strand, within Atu0964 at 953.010 kb on - strand at 953.066 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 950,740 - +0.3 950,756 - -0.9 950,916 + -0.6 950,924 - -0.2 950,924 - +0.6 950,924 - -0.7 950,924 - +1.0 950,931 + -1.9 951,027 - Atu0962 0.13 +0.1 951,037 - Atu0962 0.16 +0.8 951,054 - Atu0962 0.20 -0.0 951,056 + Atu0962 0.20 -0.9 951,056 + Atu0962 0.20 -1.4 951,056 + Atu0962 0.20 -0.5 951,064 - Atu0962 0.22 +0.1 951,116 - Atu0962 0.35 -0.3 951,145 + Atu0962 0.42 -3.2 951,145 + Atu0962 0.42 -3.2 951,186 + Atu0962 0.52 -1.0 951,210 - Atu0962 0.58 -1.1 951,253 - Atu0962 0.69 +0.6 951,289 - Atu0962 0.78 -2.4 951,332 - Atu0962 0.88 -3.7 951,332 - Atu0962 0.88 -3.3 951,377 - -2.4 951,406 + -0.8 951,447 + +0.5 951,503 + -0.6 951,503 + -2.7 951,504 + +0.3 951,529 - -0.7 951,549 + -0.2 951,583 + +1.5 951,641 - +0.5 951,810 - Atu8141 0.17 +1.2 951,810 - Atu8141 0.17 -1.5 951,810 - Atu8141 0.17 -2.3 951,812 + Atu8141 0.17 -0.1 951,820 - Atu8141 0.18 -1.8 951,862 - Atu8141 0.26 -0.0 951,959 + Atu8141 0.42 -1.3 952,036 + Atu8141 0.55 +1.7 952,041 + Atu8141 0.56 -2.8 952,044 - Atu8141 0.57 -0.4 952,088 - Atu8141 0.64 -2.4 952,098 - Atu8141 0.66 +0.3 952,145 + Atu8141 0.74 -0.8 952,163 + Atu8141 0.77 +4.6 952,171 - Atu8141 0.79 -0.0 952,248 + -0.2 952,315 + +0.5 952,322 - +1.0 952,328 - -1.4 952,469 - Atu0964 0.18 -0.0 952,573 + Atu0964 0.34 +0.3 952,573 + Atu0964 0.34 +0.0 952,573 + Atu0964 0.34 -0.8 952,694 + Atu0964 0.53 +0.2 952,701 - Atu0964 0.54 -0.8 952,702 - Atu0964 0.54 +0.6 952,754 + Atu0964 0.62 -1.3 952,788 - Atu0964 0.68 -3.5 952,837 - Atu0964 0.75 -0.5 953,010 - -0.6 953,066 + +0.7
Or see this region's nucleotide sequence