Experiment: Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5460 and Atu5461 are separated by 10 nucleotides Atu5461 and Atu5462 are separated by 2 nucleotides Atu5462 and Atu5463 overlap by 4 nucleotides Atu5463 and Atu5464 overlap by 4 nucleotides
Atu5460: Atu5460 - ABC transporter membrane spanning protein, at 452,862 to 453,788
Atu5460
Atu5461: Atu5461 - ABC transporter membrane spanning protein, at 453,799 to 454,629
Atu5461
Atu5462: Atu5462 - ABC transporter nucleotide binding/ATPase, at 454,632 to 455,714
Atu5462
Atu5463: Atu5463 - putative UDP-glucose 4-epimerase, at 455,711 to 456,694
Atu5463
Atu5464: Atu5464 - IclR family transcriptional regulator, at 456,691 to 458,373
Atu5464
Position (kb) 454
455
456 Strain fitness (log2 ratio) -2
-1
0
1
2 at 453.642 kb on + strand, within Atu5460 at 453.672 kb on - strand, within Atu5460 at 453.717 kb on + strand at 453.726 kb on + strand at 453.820 kb on + strand at 453.829 kb on + strand at 453.863 kb on - strand at 453.983 kb on - strand, within Atu5461 at 454.006 kb on - strand, within Atu5461 at 454.100 kb on + strand, within Atu5461 at 454.103 kb on - strand, within Atu5461 at 454.108 kb on - strand, within Atu5461 at 454.124 kb on - strand, within Atu5461 at 454.267 kb on + strand, within Atu5461 at 454.298 kb on + strand, within Atu5461 at 454.348 kb on - strand, within Atu5461 at 454.348 kb on - strand, within Atu5461 at 454.404 kb on - strand, within Atu5461 at 454.404 kb on - strand, within Atu5461 at 454.404 kb on - strand, within Atu5461 at 454.416 kb on - strand, within Atu5461 at 454.418 kb on + strand, within Atu5461 at 454.423 kb on + strand, within Atu5461 at 454.426 kb on - strand, within Atu5461 at 454.427 kb on + strand, within Atu5461 at 454.431 kb on - strand, within Atu5461 at 454.498 kb on - strand, within Atu5461 at 454.555 kb on + strand at 454.578 kb on - strand at 454.728 kb on + strand at 454.842 kb on + strand, within Atu5462 at 454.952 kb on + strand, within Atu5462 at 454.952 kb on + strand, within Atu5462 at 454.954 kb on - strand, within Atu5462 at 454.954 kb on - strand, within Atu5462 at 455.068 kb on + strand, within Atu5462 at 455.122 kb on - strand, within Atu5462 at 455.125 kb on + strand, within Atu5462 at 455.168 kb on + strand, within Atu5462 at 455.221 kb on - strand, within Atu5462 at 455.623 kb on + strand at 455.623 kb on + strand at 455.623 kb on + strand at 455.623 kb on + strand at 455.623 kb on + strand at 455.631 kb on - strand at 455.631 kb on - strand at 455.638 kb on + strand at 455.638 kb on + strand at 455.716 kb on - strand at 455.793 kb on + strand at 455.801 kb on - strand at 455.853 kb on + strand, within Atu5463 at 455.907 kb on + strand, within Atu5463 at 456.000 kb on + strand, within Atu5463 at 456.056 kb on + strand, within Atu5463 at 456.079 kb on - strand, within Atu5463 at 456.085 kb on + strand, within Atu5463 at 456.120 kb on - strand, within Atu5463 at 456.207 kb on - strand, within Atu5463 at 456.212 kb on - strand, within Atu5463 at 456.267 kb on + strand, within Atu5463 at 456.326 kb on + strand, within Atu5463 at 456.410 kb on - strand, within Atu5463 at 456.422 kb on - strand, within Atu5463 at 456.426 kb on + strand, within Atu5463 at 456.436 kb on - strand, within Atu5463 at 456.448 kb on + strand, within Atu5463
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 453,642 + Atu5460 0.84 +0.9 453,672 - Atu5460 0.87 +0.2 453,717 + +0.8 453,726 + -2.6 453,820 + -0.5 453,829 + -1.2 453,863 - -0.2 453,983 - Atu5461 0.22 +0.3 454,006 - Atu5461 0.25 -0.7 454,100 + Atu5461 0.36 -0.0 454,103 - Atu5461 0.37 -0.6 454,108 - Atu5461 0.37 +0.4 454,124 - Atu5461 0.39 +1.2 454,267 + Atu5461 0.56 +0.1 454,298 + Atu5461 0.60 -0.1 454,348 - Atu5461 0.66 -0.9 454,348 - Atu5461 0.66 -0.7 454,404 - Atu5461 0.73 -0.3 454,404 - Atu5461 0.73 +0.2 454,404 - Atu5461 0.73 +0.3 454,416 - Atu5461 0.74 +1.0 454,418 + Atu5461 0.74 -0.2 454,423 + Atu5461 0.75 +0.6 454,426 - Atu5461 0.75 +1.0 454,427 + Atu5461 0.76 -0.4 454,431 - Atu5461 0.76 -1.0 454,498 - Atu5461 0.84 -0.1 454,555 + -1.4 454,578 - -2.0 454,728 + -0.1 454,842 + Atu5462 0.19 -0.2 454,952 + Atu5462 0.30 -1.0 454,952 + Atu5462 0.30 -0.3 454,954 - Atu5462 0.30 -1.1 454,954 - Atu5462 0.30 -0.5 455,068 + Atu5462 0.40 -1.3 455,122 - Atu5462 0.45 -1.9 455,125 + Atu5462 0.46 -0.4 455,168 + Atu5462 0.49 -0.3 455,221 - Atu5462 0.54 -0.4 455,623 + +0.3 455,623 + -0.2 455,623 + +0.2 455,623 + -0.8 455,623 + +0.3 455,631 - -1.3 455,631 - +0.9 455,638 + -0.7 455,638 + -0.4 455,716 - -0.8 455,793 + +0.1 455,801 - -0.8 455,853 + Atu5463 0.14 -0.9 455,907 + Atu5463 0.20 +0.6 456,000 + Atu5463 0.29 -0.1 456,056 + Atu5463 0.35 -2.3 456,079 - Atu5463 0.37 -0.2 456,085 + Atu5463 0.38 -0.5 456,120 - Atu5463 0.42 +0.2 456,207 - Atu5463 0.50 -0.2 456,212 - Atu5463 0.51 +2.3 456,267 + Atu5463 0.57 -0.4 456,326 + Atu5463 0.62 +1.5 456,410 - Atu5463 0.71 +0.9 456,422 - Atu5463 0.72 +0.9 456,426 + Atu5463 0.73 -0.4 456,436 - Atu5463 0.74 +0.8 456,448 + Atu5463 0.75 -2.2
Or see this region's nucleotide sequence