Experiment: Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5184 and Atu5185 are separated by 167 nucleotides Atu5185 and Atu5186 overlap by 20 nucleotides Atu5186 and Atu5187 are separated by 106 nucleotides
Atu5184: Atu5184 - LysR family transcriptional regulator, at 180,842 to 181,771
Atu5184
Atu5185: Atu5185 - short chain dehydrogenase, at 181,939 to 182,703
Atu5185
Atu5186: Atu5186 - hypothetical protein, at 182,684 to 182,869
Atu5186
Atu5187: Atu5187 - LysR family transcriptional regulator, at 182,976 to 183,902
Atu5187
Position (kb) 182
183 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 181.708 kb on + strand at 181.708 kb on + strand at 181.769 kb on - strand at 181.769 kb on - strand at 181.778 kb on - strand at 181.804 kb on + strand at 181.929 kb on - strand at 181.929 kb on - strand at 181.929 kb on - strand at 181.964 kb on + strand at 181.988 kb on + strand at 182.059 kb on - strand, within Atu5185 at 182.059 kb on - strand, within Atu5185 at 182.091 kb on + strand, within Atu5185 at 182.099 kb on - strand, within Atu5185 at 182.139 kb on + strand, within Atu5185 at 182.147 kb on - strand, within Atu5185 at 182.205 kb on + strand, within Atu5185 at 182.338 kb on + strand, within Atu5185 at 182.346 kb on - strand, within Atu5185 at 182.348 kb on + strand, within Atu5185 at 182.407 kb on - strand, within Atu5185 at 182.498 kb on + strand, within Atu5185 at 182.500 kb on - strand, within Atu5185 at 182.533 kb on + strand, within Atu5185 at 182.533 kb on + strand, within Atu5185 at 182.541 kb on - strand, within Atu5185 at 182.541 kb on - strand, within Atu5185 at 182.541 kb on - strand, within Atu5185 at 182.541 kb on - strand, within Atu5185 at 182.574 kb on - strand, within Atu5185 at 182.665 kb on + strand at 182.787 kb on - strand, within Atu5186 at 182.851 kb on + strand at 182.958 kb on - strand at 182.985 kb on - strand at 182.987 kb on + strand at 183.007 kb on + strand at 183.024 kb on - strand at 183.072 kb on + strand, within Atu5187 at 183.089 kb on + strand, within Atu5187 at 183.113 kb on + strand, within Atu5187 at 183.124 kb on - strand, within Atu5187 at 183.195 kb on + strand, within Atu5187 at 183.236 kb on + strand, within Atu5187 at 183.236 kb on + strand, within Atu5187 at 183.238 kb on + strand, within Atu5187 at 183.244 kb on - strand, within Atu5187 at 183.246 kb on - strand, within Atu5187 at 183.345 kb on - strand, within Atu5187 at 183.469 kb on + strand, within Atu5187 at 183.469 kb on + strand, within Atu5187 at 183.471 kb on + strand, within Atu5187 at 183.472 kb on - strand, within Atu5187 at 183.472 kb on - strand, within Atu5187 at 183.509 kb on + strand, within Atu5187 at 183.554 kb on - strand, within Atu5187 at 183.567 kb on - strand, within Atu5187 at 183.630 kb on + strand, within Atu5187 at 183.714 kb on + strand, within Atu5187 at 183.800 kb on - strand, within Atu5187 at 183.824 kb on + strand at 183.839 kb on + strand at 183.839 kb on + strand at 183.860 kb on + strand at 183.866 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 181,708 + +0.5 181,708 + -0.3 181,769 - +0.9 181,769 - +0.2 181,778 - -0.7 181,804 + +0.5 181,929 - -1.1 181,929 - -0.2 181,929 - -0.8 181,964 + +1.3 181,988 + +0.4 182,059 - Atu5185 0.16 -1.6 182,059 - Atu5185 0.16 +2.0 182,091 + Atu5185 0.20 -0.5 182,099 - Atu5185 0.21 -2.2 182,139 + Atu5185 0.26 +0.3 182,147 - Atu5185 0.27 -0.5 182,205 + Atu5185 0.35 +0.2 182,338 + Atu5185 0.52 -0.0 182,346 - Atu5185 0.53 -0.3 182,348 + Atu5185 0.53 -0.4 182,407 - Atu5185 0.61 +1.6 182,498 + Atu5185 0.73 +0.8 182,500 - Atu5185 0.73 +0.3 182,533 + Atu5185 0.78 +0.2 182,533 + Atu5185 0.78 -1.3 182,541 - Atu5185 0.79 -0.2 182,541 - Atu5185 0.79 -0.0 182,541 - Atu5185 0.79 -0.7 182,541 - Atu5185 0.79 -1.1 182,574 - Atu5185 0.83 -0.8 182,665 + +0.7 182,787 - Atu5186 0.55 -0.8 182,851 + -0.1 182,958 - -0.4 182,985 - -0.1 182,987 + +0.7 183,007 + -2.0 183,024 - -1.5 183,072 + Atu5187 0.10 +0.9 183,089 + Atu5187 0.12 -1.8 183,113 + Atu5187 0.15 -0.9 183,124 - Atu5187 0.16 -0.4 183,195 + Atu5187 0.24 +2.5 183,236 + Atu5187 0.28 -0.5 183,236 + Atu5187 0.28 -1.4 183,238 + Atu5187 0.28 -1.5 183,244 - Atu5187 0.29 +0.3 183,246 - Atu5187 0.29 -0.3 183,345 - Atu5187 0.40 +1.8 183,469 + Atu5187 0.53 -0.5 183,469 + Atu5187 0.53 +0.8 183,471 + Atu5187 0.53 +1.9 183,472 - Atu5187 0.54 +0.5 183,472 - Atu5187 0.54 +0.4 183,509 + Atu5187 0.57 -1.9 183,554 - Atu5187 0.62 +3.1 183,567 - Atu5187 0.64 +0.4 183,630 + Atu5187 0.71 +0.7 183,714 + Atu5187 0.80 -4.4 183,800 - Atu5187 0.89 +0.0 183,824 + -0.9 183,839 + -1.0 183,839 + -0.2 183,860 + -0.0 183,866 - +0.8
Or see this region's nucleotide sequence