Experiment: Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu8143 and Atu0981 are separated by 218 nucleotides Atu0981 and Atu0982 are separated by 219 nucleotides
Atu8143: Atu8143 - hypothetical protein, at 970,285 to 971,145
Atu8143
Atu0981: Atu0981 - glutamate-ammonia-ligase adenylyltransferase, at 971,364 to 974,330
Atu0981
Atu0982: Atu0982 - two component sensor kinase, at 974,550 to 976,886
Atu0982
Position (kb) 971
972
973
974
975 Strain fitness (log2 ratio) -2
-1
0
1
2 at 970.713 kb on + strand, within Atu8143 at 970.722 kb on + strand, within Atu8143 at 970.976 kb on - strand, within Atu8143 at 971.099 kb on - strand at 971.238 kb on + strand at 971.238 kb on + strand at 971.258 kb on - strand at 971.425 kb on + strand at 971.537 kb on - strand at 971.738 kb on + strand, within Atu0981 at 971.782 kb on - strand, within Atu0981 at 971.855 kb on + strand, within Atu0981 at 971.863 kb on - strand, within Atu0981 at 971.868 kb on + strand, within Atu0981 at 971.870 kb on - strand, within Atu0981 at 971.963 kb on + strand, within Atu0981 at 972.081 kb on + strand, within Atu0981 at 972.158 kb on + strand, within Atu0981 at 972.201 kb on + strand, within Atu0981 at 972.374 kb on - strand, within Atu0981 at 972.412 kb on - strand, within Atu0981 at 972.603 kb on - strand, within Atu0981 at 972.635 kb on - strand, within Atu0981 at 972.688 kb on + strand, within Atu0981 at 972.967 kb on + strand, within Atu0981 at 972.977 kb on + strand, within Atu0981 at 972.985 kb on - strand, within Atu0981 at 973.225 kb on - strand, within Atu0981 at 973.279 kb on - strand, within Atu0981 at 973.678 kb on + strand, within Atu0981 at 973.773 kb on - strand, within Atu0981 at 973.846 kb on + strand, within Atu0981 at 973.885 kb on + strand, within Atu0981 at 973.958 kb on + strand, within Atu0981 at 973.966 kb on - strand, within Atu0981 at 974.026 kb on + strand, within Atu0981 at 974.267 kb on + strand at 974.289 kb on + strand at 974.320 kb on - strand at 974.354 kb on + strand at 974.441 kb on + strand at 974.444 kb on - strand at 974.489 kb on + strand at 974.497 kb on - strand at 974.560 kb on + strand at 974.564 kb on + strand at 974.570 kb on + strand at 974.570 kb on + strand at 974.578 kb on - strand at 974.578 kb on - strand at 974.578 kb on - strand at 974.726 kb on + strand at 974.741 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 970,713 + Atu8143 0.50 +1.0 970,722 + Atu8143 0.51 +0.0 970,976 - Atu8143 0.80 -0.2 971,099 - -0.2 971,238 + -0.3 971,238 + +0.2 971,258 - +1.0 971,425 + -0.5 971,537 - +0.5 971,738 + Atu0981 0.13 +0.6 971,782 - Atu0981 0.14 -1.9 971,855 + Atu0981 0.17 -0.3 971,863 - Atu0981 0.17 +0.9 971,868 + Atu0981 0.17 +0.7 971,870 - Atu0981 0.17 -0.7 971,963 + Atu0981 0.20 -2.4 972,081 + Atu0981 0.24 -0.7 972,158 + Atu0981 0.27 +0.3 972,201 + Atu0981 0.28 -1.4 972,374 - Atu0981 0.34 -1.2 972,412 - Atu0981 0.35 -1.2 972,603 - Atu0981 0.42 +0.6 972,635 - Atu0981 0.43 -1.1 972,688 + Atu0981 0.45 -0.7 972,967 + Atu0981 0.54 -0.2 972,977 + Atu0981 0.54 +1.1 972,985 - Atu0981 0.55 +1.8 973,225 - Atu0981 0.63 -1.8 973,279 - Atu0981 0.65 -0.9 973,678 + Atu0981 0.78 -0.2 973,773 - Atu0981 0.81 -0.3 973,846 + Atu0981 0.84 -1.1 973,885 + Atu0981 0.85 -0.0 973,958 + Atu0981 0.87 +0.4 973,966 - Atu0981 0.88 -1.1 974,026 + Atu0981 0.90 -0.1 974,267 + -1.5 974,289 + +1.7 974,320 - +1.7 974,354 + -0.4 974,441 + +0.8 974,444 - +2.7 974,489 + +2.3 974,497 - -0.8 974,560 + +1.4 974,564 + +0.2 974,570 + -0.1 974,570 + -0.2 974,578 - +0.9 974,578 - +0.9 974,578 - +1.4 974,726 + -1.0 974,741 - +0.9
Or see this region's nucleotide sequence