Experiment: Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0954 and Atu0955 are separated by 195 nucleotides Atu0955 and Atu0956 are separated by 49 nucleotides Atu0956 and Atu0957 are separated by 32 nucleotides
Atu0954: Atu0954 - phage head portal protein, at 943,700 to 944,866
Atu0954
Atu0955: Atu0955 - hypothetical protein, at 945,062 to 945,382
Atu0955
Atu0956: Atu0956 - phage prohead protease, at 945,432 to 946,004
Atu0956
Atu0957: Atu0957 - phage phi-C31 major capsid gp36-like protein, at 946,037 to 947,305
Atu0957
Position (kb) 945
946 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 944.109 kb on + strand, within Atu0954 at 944.112 kb on - strand, within Atu0954 at 944.119 kb on + strand, within Atu0954 at 944.127 kb on - strand, within Atu0954 at 944.169 kb on + strand, within Atu0954 at 944.171 kb on + strand, within Atu0954 at 944.238 kb on + strand, within Atu0954 at 944.273 kb on - strand, within Atu0954 at 944.341 kb on + strand, within Atu0954 at 944.364 kb on - strand, within Atu0954 at 944.406 kb on - strand, within Atu0954 at 944.437 kb on + strand, within Atu0954 at 944.441 kb on - strand, within Atu0954 at 944.514 kb on + strand, within Atu0954 at 944.602 kb on + strand, within Atu0954 at 944.699 kb on + strand, within Atu0954 at 944.712 kb on - strand, within Atu0954 at 944.738 kb on + strand, within Atu0954 at 944.753 kb on - strand at 944.867 kb on + strand at 944.878 kb on - strand at 944.979 kb on + strand at 944.989 kb on - strand at 945.037 kb on - strand at 945.061 kb on - strand at 945.114 kb on + strand, within Atu0955 at 945.234 kb on + strand, within Atu0955 at 945.260 kb on - strand, within Atu0955 at 945.321 kb on + strand, within Atu0955 at 945.329 kb on - strand, within Atu0955 at 945.341 kb on - strand, within Atu0955 at 945.358 kb on + strand at 945.378 kb on + strand at 945.442 kb on + strand at 945.478 kb on + strand at 945.478 kb on + strand at 945.486 kb on - strand at 945.557 kb on + strand, within Atu0956 at 945.682 kb on + strand, within Atu0956 at 945.748 kb on - strand, within Atu0956 at 945.749 kb on + strand, within Atu0956 at 945.959 kb on + strand at 945.988 kb on - strand at 945.988 kb on - strand at 946.046 kb on - strand at 946.048 kb on + strand at 946.048 kb on + strand at 946.084 kb on + strand at 946.084 kb on + strand at 946.084 kb on + strand at 946.092 kb on - strand at 946.092 kb on - strand at 946.092 kb on - strand at 946.116 kb on + strand at 946.138 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 944,109 + Atu0954 0.35 -0.5 944,112 - Atu0954 0.35 -0.4 944,119 + Atu0954 0.36 +0.5 944,127 - Atu0954 0.37 -2.5 944,169 + Atu0954 0.40 +0.8 944,171 + Atu0954 0.40 +0.2 944,238 + Atu0954 0.46 -2.1 944,273 - Atu0954 0.49 -1.5 944,341 + Atu0954 0.55 -0.7 944,364 - Atu0954 0.57 -1.5 944,406 - Atu0954 0.60 -0.2 944,437 + Atu0954 0.63 +2.0 944,441 - Atu0954 0.63 +0.6 944,514 + Atu0954 0.70 +1.1 944,602 + Atu0954 0.77 +0.6 944,699 + Atu0954 0.86 +1.0 944,712 - Atu0954 0.87 +0.6 944,738 + Atu0954 0.89 -1.2 944,753 - -0.3 944,867 + -0.2 944,878 - -0.2 944,979 + -0.6 944,989 - -0.4 945,037 - +0.3 945,061 - +0.3 945,114 + Atu0955 0.16 +2.4 945,234 + Atu0955 0.54 +1.1 945,260 - Atu0955 0.62 +4.0 945,321 + Atu0955 0.81 +0.5 945,329 - Atu0955 0.83 +1.1 945,341 - Atu0955 0.87 -0.1 945,358 + -0.5 945,378 + -0.1 945,442 + -0.3 945,478 + -0.7 945,478 + -0.7 945,486 - -0.8 945,557 + Atu0956 0.22 +3.0 945,682 + Atu0956 0.44 -0.3 945,748 - Atu0956 0.55 +1.4 945,749 + Atu0956 0.55 +0.7 945,959 + +2.1 945,988 - +0.2 945,988 - +2.3 946,046 - +1.0 946,048 + -0.1 946,048 + +0.9 946,084 + -0.1 946,084 + +0.7 946,084 + +0.1 946,092 - +0.2 946,092 - -0.4 946,092 - -0.5 946,116 + +0.1 946,138 + -1.7
Or see this region's nucleotide sequence