Strain Fitness in Agrobacterium fabrum C58 around Atu3628

Experiment: Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3625 and Atu3626 are separated by 5 nucleotidesAtu3626 and Atu3627 overlap by 4 nucleotidesAtu3627 and Atu3628 are separated by 32 nucleotidesAtu3628 and Atu3629 overlap by 4 nucleotides Atu3625: Atu3625 - 3-dehydroquinate synthase, at 678,656 to 679,789 Atu3625 Atu3626: Atu3626 - shikimate kinase, at 679,795 to 680,376 Atu3626 Atu3627: Atu3627 - hypothetical protein, at 680,373 to 680,531 Atu3627 Atu3628: Atu3628 - hypothetical protein, at 680,564 to 680,737 Atu3628 Atu3629: Atu3629 - site-specific tyrosine recombinase XerD, at 680,734 to 681,729 Atu3629 Position (kb) 680 681Strain fitness (log2 ratio) -2 -1 0 1 2at 679.814 kb on - strandat 680.413 kb on + strand, within Atu3627at 680.489 kb on - strand, within Atu3627at 680.614 kb on + strand, within Atu3628at 680.638 kb on + strand, within Atu3628at 680.646 kb on - strand, within Atu3628at 680.661 kb on + strand, within Atu3628at 680.667 kb on + strand, within Atu3628at 680.685 kb on + strand, within Atu3628at 680.702 kb on - strand, within Atu3628at 680.717 kb on - strand, within Atu3628at 680.738 kb on - strandat 680.745 kb on + strandat 680.753 kb on - strandat 680.753 kb on - strandat 680.772 kb on + strandat 680.772 kb on + strandat 680.780 kb on - strandat 680.780 kb on - strandat 681.699 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
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679,814 - +0.1
680,413 + Atu3627 0.25 +0.2
680,489 - Atu3627 0.73 +0.1
680,614 + Atu3628 0.29 -1.9
680,638 + Atu3628 0.43 -2.7
680,646 - Atu3628 0.47 -1.3
680,661 + Atu3628 0.56 -2.2
680,667 + Atu3628 0.59 +0.1
680,685 + Atu3628 0.70 +0.2
680,702 - Atu3628 0.79 -1.2
680,717 - Atu3628 0.88 -0.4
680,738 - -1.1
680,745 + +0.1
680,753 - -0.9
680,753 - -0.8
680,772 + +0.1
680,772 + +1.5
680,780 - +0.0
680,780 - +1.9
681,699 - +0.7

Or see this region's nucleotide sequence