Strain Fitness in Agrobacterium fabrum C58 around Atu3356

Experiment: Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3355 and Atu3356 are separated by 160 nucleotidesAtu3356 and Atu3357 are separated by 254 nucleotides Atu3355: Atu3355 - LysR family transcriptional regulator, at 391,676 to 392,575 Atu3355 Atu3356: Atu3356 - malic enzyme, at 392,736 to 395,024 Atu3356 Atu3357: Atu3357 - amino acid ABC transporter substrate-binding protein, at 395,279 to 396,118 Atu3357 Position (kb) 392 393 394 395 396Strain fitness (log2 ratio) -2 -1 0 1 2 3at 391.737 kb on + strandat 391.767 kb on + strand, within Atu3355at 391.775 kb on - strand, within Atu3355at 391.775 kb on - strand, within Atu3355at 391.777 kb on + strand, within Atu3355at 391.807 kb on - strand, within Atu3355at 391.878 kb on - strand, within Atu3355at 392.024 kb on + strand, within Atu3355at 392.034 kb on - strand, within Atu3355at 392.048 kb on + strand, within Atu3355at 392.162 kb on + strand, within Atu3355at 392.180 kb on - strand, within Atu3355at 392.192 kb on - strand, within Atu3355at 392.194 kb on + strand, within Atu3355at 392.194 kb on + strand, within Atu3355at 392.370 kb on - strand, within Atu3355at 392.370 kb on - strand, within Atu3355at 392.370 kb on - strand, within Atu3355at 392.456 kb on + strand, within Atu3355at 392.464 kb on - strand, within Atu3355at 392.464 kb on - strand, within Atu3355at 392.466 kb on - strand, within Atu3355at 392.487 kb on - strandat 392.497 kb on + strandat 392.497 kb on + strandat 392.505 kb on - strandat 392.648 kb on + strandat 392.658 kb on - strandat 392.772 kb on - strandat 392.813 kb on - strandat 392.813 kb on - strandat 392.826 kb on + strandat 392.890 kb on + strandat 392.890 kb on + strandat 393.022 kb on + strand, within Atu3356at 393.022 kb on + strand, within Atu3356at 393.030 kb on - strand, within Atu3356at 393.046 kb on + strand, within Atu3356at 393.108 kb on - strand, within Atu3356at 393.139 kb on + strand, within Atu3356at 393.139 kb on + strand, within Atu3356at 393.147 kb on - strand, within Atu3356at 393.151 kb on + strand, within Atu3356at 393.174 kb on - strand, within Atu3356at 393.184 kb on - strand, within Atu3356at 393.184 kb on - strand, within Atu3356at 393.184 kb on - strand, within Atu3356at 393.184 kb on - strand, within Atu3356at 393.287 kb on + strand, within Atu3356at 393.295 kb on - strand, within Atu3356at 393.335 kb on + strand, within Atu3356at 393.370 kb on + strand, within Atu3356at 393.378 kb on - strand, within Atu3356at 393.380 kb on + strand, within Atu3356at 393.380 kb on + strand, within Atu3356at 393.380 kb on + strand, within Atu3356at 393.380 kb on + strand, within Atu3356at 393.388 kb on - strand, within Atu3356at 393.388 kb on - strand, within Atu3356at 393.474 kb on + strand, within Atu3356at 393.529 kb on + strand, within Atu3356at 393.529 kb on - strand, within Atu3356at 393.537 kb on - strand, within Atu3356at 393.554 kb on + strand, within Atu3356at 393.628 kb on - strand, within Atu3356at 393.628 kb on - strand, within Atu3356at 393.703 kb on + strand, within Atu3356at 393.703 kb on + strand, within Atu3356at 393.721 kb on - strand, within Atu3356at 393.754 kb on + strand, within Atu3356at 393.776 kb on + strand, within Atu3356at 393.815 kb on + strand, within Atu3356at 393.886 kb on + strand, within Atu3356at 394.046 kb on - strand, within Atu3356at 394.079 kb on + strand, within Atu3356at 394.163 kb on + strand, within Atu3356at 394.191 kb on - strand, within Atu3356at 394.191 kb on - strand, within Atu3356at 394.309 kb on - strand, within Atu3356at 394.349 kb on - strand, within Atu3356at 394.462 kb on - strand, within Atu3356at 394.475 kb on + strand, within Atu3356at 394.482 kb on - strand, within Atu3356at 394.627 kb on + strand, within Atu3356at 394.635 kb on - strand, within Atu3356at 394.635 kb on - strand, within Atu3356at 394.841 kb on + strandat 394.942 kb on - strandat 395.006 kb on + strandat 395.012 kb on - strandat 395.014 kb on - strandat 395.014 kb on - strandat 395.043 kb on - strandat 395.081 kb on + strandat 395.409 kb on + strand, within Atu3357at 395.419 kb on + strand, within Atu3357at 395.491 kb on + strand, within Atu3357at 395.511 kb on + strand, within Atu3357at 395.519 kb on - strand, within Atu3357at 395.519 kb on - strand, within Atu3357at 395.526 kb on + strand, within Atu3357at 395.540 kb on + strand, within Atu3357at 395.542 kb on + strand, within Atu3357at 395.708 kb on + strand, within Atu3357at 395.742 kb on + strand, within Atu3357at 395.778 kb on + strand, within Atu3357at 395.781 kb on - strand, within Atu3357at 395.785 kb on + strand, within Atu3357at 395.785 kb on + strand, within Atu3357at 395.785 kb on + strand, within Atu3357at 395.785 kb on + strand, within Atu3357at 395.793 kb on - strand, within Atu3357at 395.793 kb on - strand, within Atu3357at 395.793 kb on - strand, within Atu3357at 395.793 kb on - strand, within Atu3357at 395.793 kb on - strand, within Atu3357at 395.793 kb on - strand, within Atu3357at 395.867 kb on + strand, within Atu3357at 395.882 kb on + strand, within Atu3357at 395.882 kb on + strand, within Atu3357at 395.882 kb on + strand, within Atu3357at 395.882 kb on + strand, within Atu3357at 395.882 kb on + strand, within Atu3357at 395.887 kb on + strand, within Atu3357at 395.978 kb on - strand, within Atu3357at 395.979 kb on - strand, within Atu3357

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
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391,737 + -0.5
391,767 + Atu3355 0.10 -0.3
391,775 - Atu3355 0.11 +0.4
391,775 - Atu3355 0.11 -1.0
391,777 + Atu3355 0.11 +2.2
391,807 - Atu3355 0.15 -0.9
391,878 - Atu3355 0.22 -0.6
392,024 + Atu3355 0.39 -0.2
392,034 - Atu3355 0.40 -0.3
392,048 + Atu3355 0.41 -0.3
392,162 + Atu3355 0.54 -0.8
392,180 - Atu3355 0.56 +1.3
392,192 - Atu3355 0.57 +0.4
392,194 + Atu3355 0.58 -0.1
392,194 + Atu3355 0.58 -0.5
392,370 - Atu3355 0.77 -1.1
392,370 - Atu3355 0.77 -0.3
392,370 - Atu3355 0.77 -0.4
392,456 + Atu3355 0.87 +0.8
392,464 - Atu3355 0.88 -0.8
392,464 - Atu3355 0.88 -0.7
392,466 - Atu3355 0.88 +0.2
392,487 - +0.6
392,497 + +1.2
392,497 + -0.2
392,505 - +0.5
392,648 + +0.2
392,658 - +0.2
392,772 - -1.9
392,813 - +1.4
392,813 - -2.3
392,826 + +1.1
392,890 + -0.5
392,890 + +1.0
393,022 + Atu3356 0.12 +0.6
393,022 + Atu3356 0.12 +0.7
393,030 - Atu3356 0.13 +0.2
393,046 + Atu3356 0.14 -0.1
393,108 - Atu3356 0.16 -0.0
393,139 + Atu3356 0.18 +0.7
393,139 + Atu3356 0.18 -1.8
393,147 - Atu3356 0.18 +0.3
393,151 + Atu3356 0.18 +1.6
393,174 - Atu3356 0.19 -0.5
393,184 - Atu3356 0.20 +1.5
393,184 - Atu3356 0.20 +0.1
393,184 - Atu3356 0.20 +0.4
393,184 - Atu3356 0.20 +1.0
393,287 + Atu3356 0.24 -0.7
393,295 - Atu3356 0.24 -0.4
393,335 + Atu3356 0.26 -0.0
393,370 + Atu3356 0.28 -0.9
393,378 - Atu3356 0.28 -0.6
393,380 + Atu3356 0.28 +0.2
393,380 + Atu3356 0.28 -0.5
393,380 + Atu3356 0.28 -0.1
393,380 + Atu3356 0.28 +0.6
393,388 - Atu3356 0.28 +0.4
393,388 - Atu3356 0.28 +0.6
393,474 + Atu3356 0.32 -0.3
393,529 + Atu3356 0.35 -1.8
393,529 - Atu3356 0.35 -0.3
393,537 - Atu3356 0.35 +0.1
393,554 + Atu3356 0.36 -0.9
393,628 - Atu3356 0.39 +0.4
393,628 - Atu3356 0.39 -0.3
393,703 + Atu3356 0.42 +0.1
393,703 + Atu3356 0.42 +1.1
393,721 - Atu3356 0.43 -0.8
393,754 + Atu3356 0.44 +2.8
393,776 + Atu3356 0.45 +0.2
393,815 + Atu3356 0.47 -0.0
393,886 + Atu3356 0.50 -0.2
394,046 - Atu3356 0.57 -2.0
394,079 + Atu3356 0.59 -0.5
394,163 + Atu3356 0.62 -0.1
394,191 - Atu3356 0.64 +0.2
394,191 - Atu3356 0.64 +0.4
394,309 - Atu3356 0.69 +0.8
394,349 - Atu3356 0.70 +0.3
394,462 - Atu3356 0.75 +1.1
394,475 + Atu3356 0.76 +0.6
394,482 - Atu3356 0.76 +0.6
394,627 + Atu3356 0.83 -0.0
394,635 - Atu3356 0.83 +0.6
394,635 - Atu3356 0.83 -0.3
394,841 + +0.1
394,942 - +1.6
395,006 + -0.7
395,012 - -0.2
395,014 - +0.4
395,014 - -0.4
395,043 - -0.4
395,081 + -0.3
395,409 + Atu3357 0.15 +0.4
395,419 + Atu3357 0.17 -1.1
395,491 + Atu3357 0.25 +0.1
395,511 + Atu3357 0.28 +0.8
395,519 - Atu3357 0.29 -0.3
395,519 - Atu3357 0.29 +0.8
395,526 + Atu3357 0.29 +0.1
395,540 + Atu3357 0.31 +0.1
395,542 + Atu3357 0.31 +1.6
395,708 + Atu3357 0.51 -0.2
395,742 + Atu3357 0.55 -0.3
395,778 + Atu3357 0.59 -0.5
395,781 - Atu3357 0.60 -0.8
395,785 + Atu3357 0.60 -0.4
395,785 + Atu3357 0.60 +1.2
395,785 + Atu3357 0.60 +0.7
395,785 + Atu3357 0.60 +1.0
395,793 - Atu3357 0.61 -0.4
395,793 - Atu3357 0.61 -0.2
395,793 - Atu3357 0.61 +0.2
395,793 - Atu3357 0.61 -0.5
395,793 - Atu3357 0.61 +0.1
395,793 - Atu3357 0.61 -0.7
395,867 + Atu3357 0.70 +0.5
395,882 + Atu3357 0.72 -0.5
395,882 + Atu3357 0.72 -0.3
395,882 + Atu3357 0.72 +0.6
395,882 + Atu3357 0.72 -0.5
395,882 + Atu3357 0.72 -0.2
395,887 + Atu3357 0.72 +1.5
395,978 - Atu3357 0.83 -0.8
395,979 - Atu3357 0.83 +0.4

Or see this region's nucleotide sequence