Experiment: Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0766 and Atu0767 are separated by 432 nucleotides Atu0767 and Atu0768 are separated by 17 nucleotides
Atu0766: Atu0766 - invasion associated locus B, at 761,679 to 762,203
Atu0766
Atu0767: Atu0767 - cytochrome c oxidase subunit II, at 762,636 to 763,499
Atu0767
Atu0768: Atu0768 - cytochrome-c oxidase chain I, at 763,517 to 765,226
Atu0768
Position (kb) 762
763
764 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 761.648 kb on - strand at 761.651 kb on + strand at 761.659 kb on - strand at 762.368 kb on + strand at 762.399 kb on - strand at 762.425 kb on + strand at 762.425 kb on + strand at 762.434 kb on - strand at 762.449 kb on + strand at 762.624 kb on + strand at 762.624 kb on + strand at 762.647 kb on + strand at 762.748 kb on + strand, within Atu0767 at 762.758 kb on + strand, within Atu0767 at 762.886 kb on - strand, within Atu0767 at 762.906 kb on + strand, within Atu0767 at 762.911 kb on + strand, within Atu0767 at 763.074 kb on + strand, within Atu0767 at 763.182 kb on - strand, within Atu0767 at 763.219 kb on - strand, within Atu0767 at 763.315 kb on + strand, within Atu0767 at 763.468 kb on + strand at 763.561 kb on + strand at 763.652 kb on - strand at 763.769 kb on + strand, within Atu0768 at 763.792 kb on - strand, within Atu0768 at 763.792 kb on - strand, within Atu0768 at 763.820 kb on + strand, within Atu0768 at 763.828 kb on - strand, within Atu0768 at 763.831 kb on + strand, within Atu0768 at 763.840 kb on + strand, within Atu0768 at 763.840 kb on + strand, within Atu0768 at 763.894 kb on + strand, within Atu0768 at 763.925 kb on + strand, within Atu0768 at 764.081 kb on + strand, within Atu0768 at 764.249 kb on - strand, within Atu0768 at 764.251 kb on + strand, within Atu0768 at 764.261 kb on + strand, within Atu0768 at 764.264 kb on - strand, within Atu0768 at 764.456 kb on + strand, within Atu0768 at 764.471 kb on - strand, within Atu0768
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 761,648 - -0.4 761,651 + +0.2 761,659 - -0.6 762,368 + -0.7 762,399 - +0.7 762,425 + +0.6 762,425 + -0.3 762,434 - +0.2 762,449 + -0.9 762,624 + -1.4 762,624 + -2.0 762,647 + -2.4 762,748 + Atu0767 0.13 -1.4 762,758 + Atu0767 0.14 -1.4 762,886 - Atu0767 0.29 -1.9 762,906 + Atu0767 0.31 -1.1 762,911 + Atu0767 0.32 -0.7 763,074 + Atu0767 0.51 -3.0 763,182 - Atu0767 0.63 -1.2 763,219 - Atu0767 0.67 -2.4 763,315 + Atu0767 0.79 -1.5 763,468 + -0.8 763,561 + +0.1 763,652 - -2.0 763,769 + Atu0768 0.15 -1.9 763,792 - Atu0768 0.16 -1.4 763,792 - Atu0768 0.16 -2.5 763,820 + Atu0768 0.18 -1.9 763,828 - Atu0768 0.18 -3.2 763,831 + Atu0768 0.18 -2.3 763,840 + Atu0768 0.19 -2.2 763,840 + Atu0768 0.19 -1.9 763,894 + Atu0768 0.22 -2.8 763,925 + Atu0768 0.24 -1.7 764,081 + Atu0768 0.33 -1.3 764,249 - Atu0768 0.43 -1.6 764,251 + Atu0768 0.43 -2.1 764,261 + Atu0768 0.44 +1.1 764,264 - Atu0768 0.44 -1.1 764,456 + Atu0768 0.55 -1.9 764,471 - Atu0768 0.56 -1.7
Or see this region's nucleotide sequence