Experiment: Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0138 and Atu0139 are separated by 109 nucleotides Atu0139 and Atu0140 overlap by 1 nucleotides Atu0140 and Atu0141 are separated by 6 nucleotides
Atu0138: Atu0138 - surfeit 1, at 141,629 to 142,459
Atu0138
Atu0139: Atu0139 - cytochrome o ubiquinol oxidase subunit IV, at 142,569 to 142,961
Atu0139
Atu0140: Atu0140 - cytochrome o ubiquinol oxidase subunit III, at 142,961 to 143,587
Atu0140
Atu0141: Atu0141 - cytochrome O ubiquinol oxidase subunit I, at 143,594 to 145,597
Atu0141
Position (kb) 142
143
144 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 141.970 kb on + strand, within Atu0138 at 142.003 kb on + strand, within Atu0138 at 142.044 kb on - strand, within Atu0138 at 142.106 kb on + strand, within Atu0138 at 142.106 kb on + strand, within Atu0138 at 142.119 kb on - strand, within Atu0138 at 142.124 kb on + strand, within Atu0138 at 142.183 kb on + strand, within Atu0138 at 142.245 kb on - strand, within Atu0138 at 142.255 kb on + strand, within Atu0138 at 142.255 kb on + strand, within Atu0138 at 142.263 kb on - strand, within Atu0138 at 142.263 kb on - strand, within Atu0138 at 142.290 kb on + strand, within Atu0138 at 142.500 kb on + strand at 142.567 kb on + strand at 142.575 kb on - strand at 142.586 kb on - strand at 142.586 kb on - strand at 142.588 kb on + strand at 143.083 kb on - strand, within Atu0140 at 143.093 kb on - strand, within Atu0140 at 143.227 kb on - strand, within Atu0140 at 143.728 kb on - strand at 143.743 kb on - strand at 143.822 kb on + strand, within Atu0141 at 143.971 kb on - strand, within Atu0141
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 141,970 + Atu0138 0.41 -2.1 142,003 + Atu0138 0.45 -1.1 142,044 - Atu0138 0.50 -4.5 142,106 + Atu0138 0.57 -2.9 142,106 + Atu0138 0.57 -1.9 142,119 - Atu0138 0.59 -2.4 142,124 + Atu0138 0.60 +0.3 142,183 + Atu0138 0.67 -3.3 142,245 - Atu0138 0.74 -2.8 142,255 + Atu0138 0.75 -3.7 142,255 + Atu0138 0.75 +0.3 142,263 - Atu0138 0.76 -2.8 142,263 - Atu0138 0.76 -1.9 142,290 + Atu0138 0.80 -3.3 142,500 + +1.6 142,567 + -3.2 142,575 - -0.9 142,586 - -1.1 142,586 - -1.4 142,588 + -2.5 143,083 - Atu0140 0.19 -1.0 143,093 - Atu0140 0.21 +0.7 143,227 - Atu0140 0.42 +0.7 143,728 - +0.7 143,743 - +1.3 143,822 + Atu0141 0.11 -0.3 143,971 - Atu0141 0.19 +0.3
Or see this region's nucleotide sequence