Experiment: Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3570 and Atu3571 overlap by 1 nucleotides Atu3571 and Atu8113 overlap by 4 nucleotides Atu8113 and Atu3572 are separated by 126 nucleotides Atu3572 and Atu3573 are separated by 28 nucleotides
Atu3570: Atu3570 - hypothetical protein, at 623,482 to 624,678
Atu3570
Atu3571: Atu3571 - hypothetical protein, at 624,678 to 625,391
Atu3571
Atu8113: Atu8113 - hypothetical protein, at 625,388 to 626,539
Atu8113
Atu3572: Atu3572 - transcriptional regulator, at 626,666 to 627,103
Atu3572
Atu3573: Atu3573 - hypothetical protein, at 627,132 to 627,431
Atu3573
Position (kb) 625
626
627 Strain fitness (log2 ratio) -2
-1
0
1
2 at 624.481 kb on - strand, within Atu3570 at 624.518 kb on - strand, within Atu3570 at 624.563 kb on + strand at 624.571 kb on - strand at 624.723 kb on - strand at 624.833 kb on - strand, within Atu3571 at 624.864 kb on - strand, within Atu3571 at 624.899 kb on - strand, within Atu3571 at 624.932 kb on + strand, within Atu3571 at 624.933 kb on + strand, within Atu3571 at 624.968 kb on - strand, within Atu3571 at 625.027 kb on - strand, within Atu3571 at 625.130 kb on + strand, within Atu3571 at 625.205 kb on - strand, within Atu3571 at 625.213 kb on + strand, within Atu3571 at 625.280 kb on + strand, within Atu3571 at 625.326 kb on + strand at 625.326 kb on - strand at 625.393 kb on - strand at 625.393 kb on - strand at 625.438 kb on - strand at 625.485 kb on + strand at 625.495 kb on - strand at 625.665 kb on - strand, within Atu8113 at 625.767 kb on + strand, within Atu8113 at 625.775 kb on - strand, within Atu8113 at 625.835 kb on - strand, within Atu8113 at 625.869 kb on + strand, within Atu8113 at 625.878 kb on - strand, within Atu8113 at 625.880 kb on + strand, within Atu8113 at 625.968 kb on + strand, within Atu8113 at 626.052 kb on + strand, within Atu8113 at 626.062 kb on + strand, within Atu8113 at 626.117 kb on + strand, within Atu8113 at 626.361 kb on - strand, within Atu8113 at 626.385 kb on + strand, within Atu8113 at 626.393 kb on - strand, within Atu8113 at 626.426 kb on + strand at 626.434 kb on - strand at 626.434 kb on - strand at 626.461 kb on - strand at 626.486 kb on + strand at 626.496 kb on + strand at 626.562 kb on + strand at 626.694 kb on + strand at 626.713 kb on + strand, within Atu3572 at 626.739 kb on + strand, within Atu3572 at 626.747 kb on - strand, within Atu3572 at 626.778 kb on + strand, within Atu3572 at 626.786 kb on - strand, within Atu3572 at 626.789 kb on + strand, within Atu3572 at 626.834 kb on + strand, within Atu3572 at 626.846 kb on + strand, within Atu3572 at 626.854 kb on - strand, within Atu3572 at 626.896 kb on + strand, within Atu3572 at 626.937 kb on - strand, within Atu3572 at 626.995 kb on + strand, within Atu3572 at 627.103 kb on + strand at 627.108 kb on + strand at 627.108 kb on + strand at 627.116 kb on - strand at 627.116 kb on - strand at 627.116 kb on - strand at 627.149 kb on - strand at 627.303 kb on - strand, within Atu3573 at 627.333 kb on + strand, within Atu3573 at 627.338 kb on + strand, within Atu3573 at 627.378 kb on - strand, within Atu3573 at 627.380 kb on + strand, within Atu3573 at 627.388 kb on - strand, within Atu3573 at 627.398 kb on - strand, within Atu3573 at 627.416 kb on + strand at 627.416 kb on + strand at 627.471 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 624,481 - Atu3570 0.83 -0.1 624,518 - Atu3570 0.87 -1.7 624,563 + +0.1 624,571 - +0.4 624,723 - -0.4 624,833 - Atu3571 0.22 +0.8 624,864 - Atu3571 0.26 -0.2 624,899 - Atu3571 0.31 -0.1 624,932 + Atu3571 0.36 -1.7 624,933 + Atu3571 0.36 -0.0 624,968 - Atu3571 0.41 +0.1 625,027 - Atu3571 0.49 -0.8 625,130 + Atu3571 0.63 +0.4 625,205 - Atu3571 0.74 +0.0 625,213 + Atu3571 0.75 -0.6 625,280 + Atu3571 0.84 -2.0 625,326 + -1.8 625,326 - +1.9 625,393 - -0.9 625,393 - +0.8 625,438 - +1.3 625,485 + +0.2 625,495 - -0.7 625,665 - Atu8113 0.24 -0.6 625,767 + Atu8113 0.33 +0.5 625,775 - Atu8113 0.34 +0.1 625,835 - Atu8113 0.39 -0.1 625,869 + Atu8113 0.42 +1.4 625,878 - Atu8113 0.43 +0.2 625,880 + Atu8113 0.43 +0.4 625,968 + Atu8113 0.50 +0.4 626,052 + Atu8113 0.58 -0.2 626,062 + Atu8113 0.59 +0.6 626,117 + Atu8113 0.63 +0.4 626,361 - Atu8113 0.84 +0.1 626,385 + Atu8113 0.87 -1.1 626,393 - Atu8113 0.87 -0.8 626,426 + +0.9 626,434 - -1.0 626,434 - -1.7 626,461 - +1.7 626,486 + +0.2 626,496 + -1.2 626,562 + -0.1 626,694 + +1.0 626,713 + Atu3572 0.11 -1.7 626,739 + Atu3572 0.17 +0.9 626,747 - Atu3572 0.18 -1.2 626,778 + Atu3572 0.26 +0.5 626,786 - Atu3572 0.27 -0.5 626,789 + Atu3572 0.28 -1.5 626,834 + Atu3572 0.38 -1.5 626,846 + Atu3572 0.41 -1.5 626,854 - Atu3572 0.43 -0.8 626,896 + Atu3572 0.53 +0.4 626,937 - Atu3572 0.62 -1.2 626,995 + Atu3572 0.75 -1.3 627,103 + -1.9 627,108 + -1.0 627,108 + +1.2 627,116 - -1.1 627,116 - -1.2 627,116 - -1.8 627,149 - +0.0 627,303 - Atu3573 0.57 +0.4 627,333 + Atu3573 0.67 -0.7 627,338 + Atu3573 0.69 +0.2 627,378 - Atu3573 0.82 +0.4 627,380 + Atu3573 0.83 +2.5 627,388 - Atu3573 0.85 +0.2 627,398 - Atu3573 0.89 +0.5 627,416 + -0.4 627,416 + +0.9 627,471 + +0.3
Or see this region's nucleotide sequence