Strain Fitness in Agrobacterium fabrum C58 around Atu5529

Experiment: Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5528 and Atu5529 are separated by 431 nucleotidesAtu5529 and Atu5530 are separated by 12 nucleotidesAtu5530 and Atu5531 are separated by 247 nucleotides Atu5528: Atu5528 - two component sensor kinase, at 520,603 to 522,531 Atu5528 Atu5529: Atu5529 - two component sensor kinase, at 522,963 to 524,114 Atu5529 Atu5530: Atu5530 - two component response regulator, at 524,127 to 524,735 Atu5530 Atu5531: Atu5531 - ABC transporter substrate binding protein, at 524,983 to 526,233 Atu5531 Position (kb) 522 523 524 525Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 521.966 kb on + strand, within Atu5528at 521.966 kb on + strand, within Atu5528at 521.976 kb on - strand, within Atu5528at 521.976 kb on - strand, within Atu5528at 521.986 kb on - strand, within Atu5528at 522.000 kb on - strand, within Atu5528at 522.035 kb on + strand, within Atu5528at 522.041 kb on + strand, within Atu5528at 522.131 kb on - strand, within Atu5528at 522.312 kb on + strand, within Atu5528at 522.346 kb on + strandat 522.393 kb on + strandat 522.398 kb on + strandat 522.445 kb on - strandat 522.445 kb on - strandat 522.474 kb on - strandat 522.514 kb on + strandat 522.514 kb on + strandat 522.529 kb on - strandat 522.539 kb on - strandat 522.540 kb on - strandat 522.547 kb on - strandat 522.567 kb on + strandat 522.590 kb on + strandat 522.645 kb on + strandat 522.647 kb on + strandat 522.673 kb on - strandat 522.689 kb on + strandat 522.712 kb on + strandat 522.712 kb on + strandat 522.712 kb on + strandat 522.720 kb on - strandat 522.772 kb on + strandat 522.780 kb on - strandat 522.788 kb on - strandat 522.790 kb on + strandat 522.800 kb on + strandat 522.846 kb on - strandat 522.864 kb on + strandat 522.902 kb on + strandat 522.912 kb on + strandat 522.912 kb on + strandat 522.920 kb on - strandat 522.920 kb on - strandat 523.016 kb on + strandat 523.024 kb on - strandat 523.079 kb on + strand, within Atu5529at 523.089 kb on + strand, within Atu5529at 523.089 kb on + strand, within Atu5529at 523.184 kb on + strand, within Atu5529at 523.192 kb on - strand, within Atu5529at 523.273 kb on - strand, within Atu5529at 523.398 kb on + strand, within Atu5529at 523.409 kb on + strand, within Atu5529at 523.422 kb on - strand, within Atu5529at 523.531 kb on - strand, within Atu5529at 523.543 kb on - strand, within Atu5529at 523.543 kb on - strand, within Atu5529at 523.543 kb on - strand, within Atu5529at 523.543 kb on - strand, within Atu5529at 523.543 kb on - strand, within Atu5529at 523.545 kb on + strand, within Atu5529at 523.605 kb on + strand, within Atu5529at 523.613 kb on - strand, within Atu5529at 523.655 kb on + strand, within Atu5529at 523.687 kb on + strand, within Atu5529at 523.695 kb on - strand, within Atu5529at 523.712 kb on - strand, within Atu5529at 523.744 kb on - strand, within Atu5529at 523.754 kb on - strand, within Atu5529at 523.763 kb on + strand, within Atu5529at 523.828 kb on + strand, within Atu5529at 523.854 kb on + strand, within Atu5529at 523.873 kb on + strand, within Atu5529at 523.911 kb on + strand, within Atu5529at 523.936 kb on - strand, within Atu5529at 523.998 kb on - strand, within Atu5529at 523.998 kb on - strand, within Atu5529at 524.098 kb on + strandat 524.103 kb on + strandat 524.116 kb on - strandat 524.116 kb on - strandat 524.129 kb on - strandat 524.141 kb on + strandat 524.165 kb on + strandat 524.188 kb on - strand, within Atu5530at 524.254 kb on - strand, within Atu5530at 524.254 kb on - strand, within Atu5530at 524.254 kb on - strand, within Atu5530at 524.254 kb on - strand, within Atu5530at 524.276 kb on + strand, within Atu5530at 524.278 kb on + strand, within Atu5530at 524.348 kb on + strand, within Atu5530at 524.348 kb on + strand, within Atu5530at 524.348 kb on + strand, within Atu5530at 524.393 kb on + strand, within Atu5530at 524.400 kb on + strand, within Atu5530at 524.401 kb on - strand, within Atu5530at 524.401 kb on - strand, within Atu5530at 524.412 kb on + strand, within Atu5530at 524.412 kb on + strand, within Atu5530at 524.412 kb on + strand, within Atu5530at 524.412 kb on + strand, within Atu5530at 524.440 kb on - strand, within Atu5530at 524.551 kb on - strand, within Atu5530at 524.634 kb on - strand, within Atu5530at 524.665 kb on - strand, within Atu5530at 524.853 kb on + strandat 524.886 kb on + strandat 524.930 kb on + strandat 524.930 kb on + strandat 524.930 kb on + strandat 524.930 kb on + strandat 524.938 kb on - strandat 524.938 kb on - strandat 524.945 kb on + strandat 524.970 kb on - strandat 524.988 kb on + strandat 524.994 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
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521,966 + Atu5528 0.71 -0.6
521,966 + Atu5528 0.71 +4.1
521,976 - Atu5528 0.71 -0.9
521,976 - Atu5528 0.71 +0.5
521,986 - Atu5528 0.72 +1.2
522,000 - Atu5528 0.72 +0.1
522,035 + Atu5528 0.74 +0.4
522,041 + Atu5528 0.75 -1.0
522,131 - Atu5528 0.79 +1.8
522,312 + Atu5528 0.89 +0.2
522,346 + +0.8
522,393 + +0.8
522,398 + -0.8
522,445 - -2.3
522,445 - -0.3
522,474 - -0.8
522,514 + -0.5
522,514 + +0.1
522,529 - -0.5
522,539 - +0.3
522,540 - -0.7
522,547 - +0.7
522,567 + -0.9
522,590 + +0.5
522,645 + -0.6
522,647 + +0.1
522,673 - -0.7
522,689 + -0.4
522,712 + +0.5
522,712 + +0.2
522,712 + -0.2
522,720 - -0.3
522,772 + +1.1
522,780 - +0.3
522,788 - +0.4
522,790 + +0.5
522,800 + +0.4
522,846 - +0.4
522,864 + +0.9
522,902 + -0.5
522,912 + -0.4
522,912 + +0.9
522,920 - -1.3
522,920 - -2.1
523,016 + -1.4
523,024 - -2.6
523,079 + Atu5529 0.10 -0.6
523,089 + Atu5529 0.11 +0.7
523,089 + Atu5529 0.11 +0.4
523,184 + Atu5529 0.19 +0.9
523,192 - Atu5529 0.20 +1.2
523,273 - Atu5529 0.27 +0.1
523,398 + Atu5529 0.38 +1.2
523,409 + Atu5529 0.39 +1.9
523,422 - Atu5529 0.40 +1.0
523,531 - Atu5529 0.49 -0.0
523,543 - Atu5529 0.50 -2.9
523,543 - Atu5529 0.50 +0.6
523,543 - Atu5529 0.50 +1.2
523,543 - Atu5529 0.50 +1.3
523,543 - Atu5529 0.50 -0.4
523,545 + Atu5529 0.51 -0.1
523,605 + Atu5529 0.56 +0.4
523,613 - Atu5529 0.56 +0.5
523,655 + Atu5529 0.60 -0.6
523,687 + Atu5529 0.63 -0.7
523,695 - Atu5529 0.64 +0.9
523,712 - Atu5529 0.65 -0.5
523,744 - Atu5529 0.68 +1.8
523,754 - Atu5529 0.69 -0.6
523,763 + Atu5529 0.69 +1.4
523,828 + Atu5529 0.75 +0.2
523,854 + Atu5529 0.77 +3.0
523,873 + Atu5529 0.79 +1.2
523,911 + Atu5529 0.82 +0.5
523,936 - Atu5529 0.84 +1.4
523,998 - Atu5529 0.90 +0.3
523,998 - Atu5529 0.90 -1.2
524,098 + +0.6
524,103 + +0.7
524,116 - -0.8
524,116 - -0.2
524,129 - -0.9
524,141 + +0.7
524,165 + +0.1
524,188 - Atu5530 0.10 -0.4
524,254 - Atu5530 0.21 -1.1
524,254 - Atu5530 0.21 -1.3
524,254 - Atu5530 0.21 +0.5
524,254 - Atu5530 0.21 +0.5
524,276 + Atu5530 0.24 +0.3
524,278 + Atu5530 0.25 +1.6
524,348 + Atu5530 0.36 -0.5
524,348 + Atu5530 0.36 +0.4
524,348 + Atu5530 0.36 -0.8
524,393 + Atu5530 0.44 -2.4
524,400 + Atu5530 0.45 -0.3
524,401 - Atu5530 0.45 -1.1
524,401 - Atu5530 0.45 +1.3
524,412 + Atu5530 0.47 -1.0
524,412 + Atu5530 0.47 +0.2
524,412 + Atu5530 0.47 -0.4
524,412 + Atu5530 0.47 +1.0
524,440 - Atu5530 0.51 +0.4
524,551 - Atu5530 0.70 -0.2
524,634 - Atu5530 0.83 +0.6
524,665 - Atu5530 0.88 +0.8
524,853 + -0.0
524,886 + +2.2
524,930 + -0.1
524,930 + -0.2
524,930 + -2.4
524,930 + +1.4
524,938 - -0.5
524,938 - -0.0
524,945 + +2.8
524,970 - -0.6
524,988 + -0.2
524,994 - +1.6

Or see this region's nucleotide sequence