Strain Fitness in Agrobacterium fabrum C58 around Atu5418

Experiment: Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5418 and Atu5419 are separated by 386 nucleotides Atu5418: Atu5418 - opine/octopine dehydrogenase, at 412,276 to 413,358 Atu5418 Atu5419: Atu5419 - LysR family transcriptional regulator, at 413,745 to 414,725 Atu5419 Position (kb) 412 413 414Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 411.350 kb on - strandat 411.352 kb on + strandat 411.375 kb on + strandat 411.448 kb on - strandat 411.484 kb on + strandat 411.498 kb on + strandat 411.520 kb on + strandat 411.521 kb on - strandat 411.525 kb on + strandat 411.525 kb on + strandat 411.573 kb on + strandat 411.581 kb on - strandat 411.581 kb on - strandat 411.590 kb on + strandat 411.605 kb on + strandat 411.691 kb on + strandat 411.720 kb on + strandat 411.720 kb on + strandat 411.746 kb on + strandat 411.876 kb on - strandat 411.884 kb on + strandat 411.894 kb on + strandat 411.906 kb on + strandat 411.946 kb on + strandat 411.954 kb on - strandat 411.954 kb on - strandat 411.984 kb on - strandat 412.009 kb on + strandat 412.046 kb on + strandat 412.054 kb on - strandat 412.105 kb on - strandat 412.224 kb on - strandat 412.226 kb on + strandat 412.236 kb on + strandat 412.244 kb on - strandat 412.262 kb on + strandat 412.265 kb on - strandat 412.470 kb on + strand, within Atu5418at 412.492 kb on + strand, within Atu5418at 412.518 kb on + strand, within Atu5418at 412.518 kb on + strand, within Atu5418at 412.535 kb on + strand, within Atu5418at 412.545 kb on + strand, within Atu5418at 412.573 kb on + strand, within Atu5418at 412.573 kb on + strand, within Atu5418at 412.581 kb on - strand, within Atu5418at 412.584 kb on + strand, within Atu5418at 412.592 kb on - strand, within Atu5418at 412.606 kb on - strand, within Atu5418at 412.637 kb on - strand, within Atu5418at 412.637 kb on - strand, within Atu5418at 412.661 kb on + strand, within Atu5418at 412.713 kb on + strand, within Atu5418at 412.713 kb on + strand, within Atu5418at 412.721 kb on - strand, within Atu5418at 412.722 kb on + strand, within Atu5418at 412.850 kb on - strand, within Atu5418at 412.854 kb on + strand, within Atu5418at 412.854 kb on + strand, within Atu5418at 412.854 kb on + strand, within Atu5418at 412.854 kb on + strand, within Atu5418at 412.854 kb on + strand, within Atu5418at 412.854 kb on + strand, within Atu5418at 412.854 kb on + strand, within Atu5418at 412.854 kb on + strand, within Atu5418at 412.854 kb on + strand, within Atu5418at 412.854 kb on + strand, within Atu5418at 412.854 kb on + strand, within Atu5418at 412.854 kb on + strand, within Atu5418at 412.854 kb on + strand, within Atu5418at 412.854 kb on + strand, within Atu5418at 412.854 kb on + strand, within Atu5418at 412.854 kb on + strand, within Atu5418at 412.855 kb on + strand, within Atu5418at 412.862 kb on - strand, within Atu5418at 412.862 kb on - strand, within Atu5418at 412.862 kb on - strand, within Atu5418at 412.862 kb on - strand, within Atu5418at 412.862 kb on - strand, within Atu5418at 412.862 kb on - strand, within Atu5418at 412.862 kb on - strand, within Atu5418at 412.862 kb on - strand, within Atu5418at 412.863 kb on - strand, within Atu5418at 412.863 kb on - strand, within Atu5418at 412.864 kb on + strand, within Atu5418at 412.872 kb on - strand, within Atu5418at 412.931 kb on - strand, within Atu5418at 413.034 kb on + strand, within Atu5418at 413.065 kb on + strand, within Atu5418at 413.140 kb on - strand, within Atu5418at 413.166 kb on + strand, within Atu5418at 413.166 kb on + strand, within Atu5418at 413.290 kb on - strandat 413.395 kb on - strandat 413.404 kb on + strandat 413.412 kb on - strandat 413.495 kb on - strandat 413.502 kb on + strandat 413.537 kb on + strandat 413.537 kb on + strandat 413.537 kb on + strandat 413.540 kb on - strandat 413.543 kb on + strandat 413.545 kb on - strandat 413.553 kb on + strandat 413.617 kb on - strandat 413.767 kb on + strandat 413.807 kb on + strandat 413.832 kb on - strandat 413.918 kb on + strand, within Atu5419at 413.992 kb on + strand, within Atu5419at 413.993 kb on - strand, within Atu5419at 414.010 kb on + strand, within Atu5419at 414.010 kb on + strand, within Atu5419at 414.014 kb on + strand, within Atu5419at 414.072 kb on - strand, within Atu5419at 414.087 kb on - strand, within Atu5419at 414.093 kb on + strand, within Atu5419at 414.149 kb on + strand, within Atu5419at 414.159 kb on + strand, within Atu5419at 414.172 kb on + strand, within Atu5419at 414.180 kb on - strand, within Atu5419at 414.230 kb on - strand, within Atu5419at 414.252 kb on + strand, within Atu5419

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
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411,350 - -0.3
411,352 + -0.2
411,375 + -0.6
411,448 - +0.6
411,484 + -0.6
411,498 + -0.6
411,520 + +0.1
411,521 - +0.2
411,525 + +0.7
411,525 + -0.2
411,573 + -1.2
411,581 - +1.6
411,581 - -0.5
411,590 + +0.2
411,605 + +0.1
411,691 + -0.3
411,720 + -0.1
411,720 + -0.9
411,746 + -2.0
411,876 - +0.5
411,884 + -1.8
411,894 + -0.8
411,906 + -0.4
411,946 + +1.0
411,954 - -0.8
411,954 - -0.2
411,984 - +0.3
412,009 + -1.2
412,046 + +1.8
412,054 - -0.0
412,105 - -0.8
412,224 - +1.4
412,226 + +0.4
412,236 + +3.2
412,244 - -0.1
412,262 + +0.5
412,265 - -1.8
412,470 + Atu5418 0.18 -0.3
412,492 + Atu5418 0.20 +0.8
412,518 + Atu5418 0.22 +0.7
412,518 + Atu5418 0.22 +1.6
412,535 + Atu5418 0.24 +0.4
412,545 + Atu5418 0.25 -0.8
412,573 + Atu5418 0.27 +0.3
412,573 + Atu5418 0.27 -0.9
412,581 - Atu5418 0.28 -0.9
412,584 + Atu5418 0.28 -1.6
412,592 - Atu5418 0.29 -0.6
412,606 - Atu5418 0.30 +0.2
412,637 - Atu5418 0.33 +0.8
412,637 - Atu5418 0.33 +0.1
412,661 + Atu5418 0.36 +1.4
412,713 + Atu5418 0.40 +0.1
412,713 + Atu5418 0.40 -0.1
412,721 - Atu5418 0.41 -0.2
412,722 + Atu5418 0.41 +0.1
412,850 - Atu5418 0.53 +0.0
412,854 + Atu5418 0.53 -0.8
412,854 + Atu5418 0.53 +1.9
412,854 + Atu5418 0.53 +0.1
412,854 + Atu5418 0.53 +1.2
412,854 + Atu5418 0.53 +1.0
412,854 + Atu5418 0.53 +0.2
412,854 + Atu5418 0.53 +1.1
412,854 + Atu5418 0.53 +0.9
412,854 + Atu5418 0.53 -0.6
412,854 + Atu5418 0.53 -1.2
412,854 + Atu5418 0.53 -1.3
412,854 + Atu5418 0.53 +0.2
412,854 + Atu5418 0.53 -0.7
412,854 + Atu5418 0.53 +1.6
412,854 + Atu5418 0.53 +0.1
412,854 + Atu5418 0.53 -1.8
412,855 + Atu5418 0.53 +2.1
412,862 - Atu5418 0.54 +0.2
412,862 - Atu5418 0.54 +0.1
412,862 - Atu5418 0.54 +0.6
412,862 - Atu5418 0.54 +0.6
412,862 - Atu5418 0.54 +0.4
412,862 - Atu5418 0.54 -1.1
412,862 - Atu5418 0.54 +2.5
412,862 - Atu5418 0.54 +1.5
412,863 - Atu5418 0.54 -0.2
412,863 - Atu5418 0.54 +0.1
412,864 + Atu5418 0.54 -1.9
412,872 - Atu5418 0.55 +2.6
412,931 - Atu5418 0.60 +1.3
413,034 + Atu5418 0.70 +0.7
413,065 + Atu5418 0.73 +1.1
413,140 - Atu5418 0.80 -0.2
413,166 + Atu5418 0.82 +0.1
413,166 + Atu5418 0.82 -0.6
413,290 - +0.5
413,395 - +0.3
413,404 + +1.8
413,412 - +0.0
413,495 - +0.1
413,502 + +1.4
413,537 + -0.3
413,537 + -0.8
413,537 + +0.1
413,540 - -0.2
413,543 + +0.2
413,545 - +2.2
413,553 + +1.0
413,617 - -2.4
413,767 + -1.3
413,807 + -2.5
413,832 - +1.2
413,918 + Atu5419 0.18 +0.8
413,992 + Atu5419 0.25 -3.1
413,993 - Atu5419 0.25 +0.5
414,010 + Atu5419 0.27 -0.0
414,010 + Atu5419 0.27 -0.6
414,014 + Atu5419 0.27 +0.5
414,072 - Atu5419 0.33 -1.6
414,087 - Atu5419 0.35 +0.3
414,093 + Atu5419 0.35 +0.6
414,149 + Atu5419 0.41 +0.2
414,159 + Atu5419 0.42 -0.8
414,172 + Atu5419 0.44 -2.5
414,180 - Atu5419 0.44 +0.4
414,230 - Atu5419 0.49 -0.6
414,252 + Atu5419 0.52 +0.7

Or see this region's nucleotide sequence