Experiment: Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3726 and Atu3727 are separated by 86 nucleotides Atu3727 and Atu3728 are separated by 197 nucleotides Atu3728 and Atu3729 are separated by 36 nucleotides
Atu3726: Atu3726 - flavin dependent oxidoreductase, at 807,318 to 808,319
Atu3726
Atu3727: Atu3727 - hypothetical protein, at 808,406 to 809,152
Atu3727
Atu3728: Atu3728 - hypothetical protein, at 809,350 to 809,853
Atu3728
Atu3729: Atu3729 - hypothetical protein, at 809,890 to 810,543
Atu3729
Position (kb) 808
809
810 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 807.515 kb on - strand, within Atu3726 at 807.544 kb on + strand, within Atu3726 at 807.587 kb on + strand, within Atu3726 at 807.595 kb on - strand, within Atu3726 at 807.595 kb on - strand, within Atu3726 at 807.739 kb on + strand, within Atu3726 at 807.742 kb on - strand, within Atu3726 at 807.747 kb on - strand, within Atu3726 at 807.860 kb on + strand, within Atu3726 at 807.860 kb on + strand, within Atu3726 at 807.914 kb on + strand, within Atu3726 at 807.937 kb on - strand, within Atu3726 at 807.955 kb on + strand, within Atu3726 at 807.956 kb on + strand, within Atu3726 at 807.956 kb on + strand, within Atu3726 at 808.093 kb on + strand, within Atu3726 at 808.094 kb on - strand, within Atu3726 at 808.101 kb on - strand, within Atu3726 at 808.560 kb on + strand, within Atu3727 at 808.703 kb on - strand, within Atu3727 at 808.726 kb on - strand, within Atu3727 at 808.862 kb on - strand, within Atu3727 at 808.949 kb on + strand, within Atu3727 at 809.245 kb on + strand at 809.280 kb on + strand at 809.291 kb on + strand at 809.386 kb on + strand at 809.411 kb on - strand, within Atu3728 at 809.458 kb on - strand, within Atu3728 at 809.458 kb on - strand, within Atu3728 at 809.460 kb on + strand, within Atu3728 at 809.481 kb on + strand, within Atu3728 at 809.562 kb on + strand, within Atu3728 at 809.570 kb on - strand, within Atu3728 at 809.570 kb on - strand, within Atu3728 at 809.675 kb on + strand, within Atu3728 at 809.675 kb on + strand, within Atu3728 at 809.683 kb on - strand, within Atu3728 at 809.693 kb on - strand, within Atu3728 at 809.694 kb on - strand, within Atu3728 at 809.757 kb on - strand, within Atu3728 at 809.986 kb on + strand, within Atu3729 at 810.038 kb on + strand, within Atu3729 at 810.046 kb on - strand, within Atu3729 at 810.066 kb on + strand, within Atu3729 at 810.071 kb on + strand, within Atu3729 at 810.074 kb on - strand, within Atu3729
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 807,515 - Atu3726 0.20 -0.0 807,544 + Atu3726 0.23 -0.0 807,587 + Atu3726 0.27 -1.7 807,595 - Atu3726 0.28 -0.6 807,595 - Atu3726 0.28 +0.0 807,739 + Atu3726 0.42 -0.0 807,742 - Atu3726 0.42 +0.2 807,747 - Atu3726 0.43 -0.2 807,860 + Atu3726 0.54 +2.1 807,860 + Atu3726 0.54 -1.0 807,914 + Atu3726 0.59 +0.6 807,937 - Atu3726 0.62 +0.4 807,955 + Atu3726 0.64 -0.9 807,956 + Atu3726 0.64 +0.2 807,956 + Atu3726 0.64 +0.7 808,093 + Atu3726 0.77 +1.9 808,094 - Atu3726 0.77 -0.2 808,101 - Atu3726 0.78 -2.6 808,560 + Atu3727 0.21 -4.0 808,703 - Atu3727 0.40 -0.6 808,726 - Atu3727 0.43 -3.0 808,862 - Atu3727 0.61 -3.2 808,949 + Atu3727 0.73 +0.1 809,245 + +0.3 809,280 + -0.2 809,291 + +0.4 809,386 + +0.1 809,411 - Atu3728 0.12 +1.1 809,458 - Atu3728 0.21 +0.7 809,458 - Atu3728 0.21 +0.8 809,460 + Atu3728 0.22 +1.1 809,481 + Atu3728 0.26 +0.1 809,562 + Atu3728 0.42 +0.2 809,570 - Atu3728 0.44 +0.5 809,570 - Atu3728 0.44 -1.3 809,675 + Atu3728 0.64 -2.2 809,675 + Atu3728 0.64 +0.7 809,683 - Atu3728 0.66 +0.1 809,693 - Atu3728 0.68 -1.3 809,694 - Atu3728 0.68 +1.2 809,757 - Atu3728 0.81 -0.4 809,986 + Atu3729 0.15 +0.4 810,038 + Atu3729 0.23 -1.3 810,046 - Atu3729 0.24 +1.4 810,066 + Atu3729 0.27 -0.2 810,071 + Atu3729 0.28 +1.4 810,074 - Atu3729 0.28 +0.0
Or see this region's nucleotide sequence