Experiment: Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3654 and Atu3655 are separated by 336 nucleotides Atu3655 and Atu3656 are separated by 180 nucleotides Atu3656 and Atu3657 are separated by 268 nucleotides
Atu3654: Atu3654 - hypothetical protein, at 704,727 to 705,242
Atu3654
Atu3655: Atu3655 - antioxidant protein, at 705,579 to 706,145
Atu3655
Atu3656: Atu3656 - acetyltransferase, at 706,326 to 706,712
Atu3656
Atu3657: Atu3657 - hypothetical protein, at 706,981 to 707,229
Atu3657
Position (kb) 705
706
707 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 704.591 kb on + strand at 704.593 kb on + strand at 704.599 kb on - strand at 704.601 kb on - strand at 704.606 kb on + strand at 704.625 kb on - strand at 704.630 kb on - strand at 704.640 kb on - strand at 704.666 kb on - strand at 704.679 kb on + strand at 704.754 kb on + strand at 704.820 kb on - strand, within Atu3654 at 704.833 kb on - strand, within Atu3654 at 704.868 kb on + strand, within Atu3654 at 704.871 kb on + strand, within Atu3654 at 704.871 kb on + strand, within Atu3654 at 704.878 kb on + strand, within Atu3654 at 704.878 kb on + strand, within Atu3654 at 704.881 kb on - strand, within Atu3654 at 704.886 kb on - strand, within Atu3654 at 704.888 kb on - strand, within Atu3654 at 704.892 kb on + strand, within Atu3654 at 704.988 kb on - strand, within Atu3654 at 705.006 kb on + strand, within Atu3654 at 705.020 kb on + strand, within Atu3654 at 705.039 kb on + strand, within Atu3654 at 705.048 kb on - strand, within Atu3654 at 705.150 kb on - strand, within Atu3654 at 705.237 kb on - strand at 705.251 kb on - strand at 705.258 kb on + strand at 705.280 kb on + strand at 705.346 kb on + strand at 705.356 kb on + strand at 705.369 kb on - strand at 705.374 kb on - strand at 705.496 kb on + strand at 705.506 kb on + strand at 705.571 kb on - strand at 705.632 kb on + strand at 705.688 kb on - strand, within Atu3655 at 705.720 kb on + strand, within Atu3655 at 705.728 kb on - strand, within Atu3655 at 705.745 kb on - strand, within Atu3655 at 705.789 kb on + strand, within Atu3655 at 705.812 kb on - strand, within Atu3655 at 705.839 kb on + strand, within Atu3655 at 705.848 kb on + strand, within Atu3655 at 705.850 kb on - strand, within Atu3655 at 705.907 kb on + strand, within Atu3655 at 705.939 kb on - strand, within Atu3655 at 705.970 kb on + strand, within Atu3655 at 705.978 kb on - strand, within Atu3655 at 705.986 kb on + strand, within Atu3655 at 706.066 kb on + strand, within Atu3655 at 706.074 kb on - strand, within Atu3655 at 706.134 kb on + strand at 706.179 kb on + strand at 706.267 kb on - strand at 706.334 kb on + strand at 706.382 kb on + strand, within Atu3656 at 706.389 kb on - strand, within Atu3656 at 706.438 kb on + strand, within Atu3656 at 706.438 kb on + strand, within Atu3656 at 706.438 kb on + strand, within Atu3656 at 706.446 kb on - strand, within Atu3656 at 706.446 kb on - strand, within Atu3656 at 706.459 kb on + strand, within Atu3656 at 706.499 kb on + strand, within Atu3656 at 706.507 kb on - strand, within Atu3656 at 706.507 kb on - strand, within Atu3656 at 706.509 kb on + strand, within Atu3656 at 706.512 kb on - strand, within Atu3656 at 706.524 kb on - strand, within Atu3656 at 706.534 kb on + strand, within Atu3656 at 706.682 kb on + strand at 706.683 kb on + strand at 706.687 kb on + strand at 706.687 kb on + strand at 706.690 kb on - strand at 706.695 kb on - strand at 706.703 kb on + strand at 706.766 kb on - strand at 706.835 kb on + strand at 706.858 kb on + strand at 706.983 kb on + strand at 707.012 kb on + strand, within Atu3657 at 707.012 kb on + strand, within Atu3657 at 707.020 kb on - strand, within Atu3657
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 704,591 + +0.9 704,593 + +0.7 704,599 - +0.7 704,601 - -0.2 704,606 + +2.0 704,625 - -0.7 704,630 - +3.2 704,640 - -0.5 704,666 - -1.6 704,679 + -2.4 704,754 + +0.8 704,820 - Atu3654 0.18 +0.5 704,833 - Atu3654 0.21 +1.2 704,868 + Atu3654 0.27 -0.2 704,871 + Atu3654 0.28 +0.5 704,871 + Atu3654 0.28 +0.2 704,878 + Atu3654 0.29 +1.1 704,878 + Atu3654 0.29 +0.0 704,881 - Atu3654 0.30 +0.1 704,886 - Atu3654 0.31 -0.3 704,888 - Atu3654 0.31 +1.5 704,892 + Atu3654 0.32 -1.1 704,988 - Atu3654 0.51 -0.5 705,006 + Atu3654 0.54 -1.4 705,020 + Atu3654 0.57 +0.5 705,039 + Atu3654 0.60 +1.2 705,048 - Atu3654 0.62 +0.9 705,150 - Atu3654 0.82 -1.7 705,237 - -1.8 705,251 - +0.2 705,258 + -0.5 705,280 + -0.2 705,346 + +0.6 705,356 + +0.4 705,369 - +0.2 705,374 - -0.9 705,496 + +0.9 705,506 + +0.5 705,571 - +0.6 705,632 + +1.7 705,688 - Atu3655 0.19 +0.6 705,720 + Atu3655 0.25 -1.0 705,728 - Atu3655 0.26 -2.0 705,745 - Atu3655 0.29 +0.8 705,789 + Atu3655 0.37 +0.1 705,812 - Atu3655 0.41 +0.4 705,839 + Atu3655 0.46 +1.2 705,848 + Atu3655 0.47 +0.1 705,850 - Atu3655 0.48 +0.0 705,907 + Atu3655 0.58 +1.2 705,939 - Atu3655 0.63 -0.2 705,970 + Atu3655 0.69 +0.4 705,978 - Atu3655 0.70 +0.7 705,986 + Atu3655 0.72 +1.4 706,066 + Atu3655 0.86 -2.1 706,074 - Atu3655 0.87 -1.0 706,134 + +0.5 706,179 + +0.5 706,267 - -1.5 706,334 + +0.7 706,382 + Atu3656 0.14 +0.3 706,389 - Atu3656 0.16 +0.3 706,438 + Atu3656 0.29 -0.4 706,438 + Atu3656 0.29 +0.2 706,438 + Atu3656 0.29 +0.2 706,446 - Atu3656 0.31 +0.0 706,446 - Atu3656 0.31 -0.5 706,459 + Atu3656 0.34 +0.8 706,499 + Atu3656 0.45 +0.2 706,507 - Atu3656 0.47 +0.1 706,507 - Atu3656 0.47 -0.6 706,509 + Atu3656 0.47 -0.1 706,512 - Atu3656 0.48 -0.3 706,524 - Atu3656 0.51 -0.3 706,534 + Atu3656 0.54 -1.4 706,682 + -0.7 706,683 + -0.1 706,687 + -1.8 706,687 + +0.4 706,690 - +0.3 706,695 - +0.0 706,703 + -1.4 706,766 - +1.4 706,835 + +1.1 706,858 + +0.2 706,983 + +1.0 707,012 + Atu3657 0.12 +0.8 707,012 + Atu3657 0.12 -1.2 707,020 - Atu3657 0.16 +0.0
Or see this region's nucleotide sequence