Experiment: Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3556 and Atu8033 are separated by 13 nucleotides Atu8033 and Atu3557 are separated by 132 nucleotides Atu3557 and Atu3558 are separated by 16 nucleotides
Atu3556: Atu3556 - exopolysaccharide polymerization/transport protein, at 606,898 to 609,147
Atu3556
Atu8033: Atu8033 - hypothetical protein, at 609,161 to 609,817
Atu8033
Atu3557: Atu3557 - hypothetical protein, at 609,950 to 611,419
Atu3557
Atu3558: Atu3558 - glycosyltransferase, at 611,436 to 612,650
Atu3558
Position (kb) 609
610
611
612 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 608.973 kb on + strand at 608.995 kb on + strand at 608.997 kb on + strand at 609.003 kb on - strand at 609.005 kb on - strand at 609.142 kb on + strand at 609.202 kb on - strand at 609.228 kb on - strand, within Atu8033 at 609.348 kb on - strand, within Atu8033 at 609.453 kb on + strand, within Atu8033 at 609.545 kb on + strand, within Atu8033 at 609.552 kb on - strand, within Atu8033 at 609.674 kb on + strand, within Atu8033 at 609.721 kb on - strand, within Atu8033 at 609.841 kb on - strand at 609.875 kb on - strand at 609.915 kb on + strand at 609.972 kb on + strand at 609.994 kb on - strand at 610.021 kb on + strand at 610.026 kb on - strand at 610.111 kb on + strand, within Atu3557 at 610.119 kb on - strand, within Atu3557 at 610.119 kb on - strand, within Atu3557 at 610.168 kb on + strand, within Atu3557 at 610.191 kb on - strand, within Atu3557 at 610.191 kb on - strand, within Atu3557 at 610.319 kb on + strand, within Atu3557 at 610.319 kb on + strand, within Atu3557 at 610.319 kb on + strand, within Atu3557 at 610.319 kb on + strand, within Atu3557 at 610.319 kb on + strand, within Atu3557 at 610.426 kb on + strand, within Atu3557 at 610.434 kb on - strand, within Atu3557 at 610.504 kb on - strand, within Atu3557 at 610.527 kb on - strand, within Atu3557 at 610.530 kb on - strand, within Atu3557 at 610.538 kb on - strand, within Atu3557 at 610.545 kb on + strand, within Atu3557 at 610.554 kb on + strand, within Atu3557 at 610.562 kb on - strand, within Atu3557 at 610.564 kb on + strand, within Atu3557 at 610.584 kb on - strand, within Atu3557 at 610.609 kb on + strand, within Atu3557 at 610.856 kb on - strand, within Atu3557 at 610.892 kb on - strand, within Atu3557 at 611.018 kb on - strand, within Atu3557 at 611.018 kb on - strand, within Atu3557 at 611.089 kb on + strand, within Atu3557 at 611.145 kb on + strand, within Atu3557 at 611.345 kb on - strand at 611.345 kb on - strand at 611.470 kb on - strand at 611.515 kb on - strand at 611.531 kb on + strand at 611.575 kb on + strand, within Atu3558 at 611.613 kb on + strand, within Atu3558 at 611.753 kb on + strand, within Atu3558 at 611.895 kb on + strand, within Atu3558 at 612.076 kb on + strand, within Atu3558 at 612.083 kb on + strand, within Atu3558 at 612.083 kb on + strand, within Atu3558 at 612.084 kb on - strand, within Atu3558 at 612.125 kb on + strand, within Atu3558 at 612.216 kb on - strand, within Atu3558 at 612.218 kb on + strand, within Atu3558 at 612.293 kb on + strand, within Atu3558
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 608,973 + -0.6 608,995 + -0.4 608,997 + +1.1 609,003 - +1.1 609,005 - +0.4 609,142 + +3.0 609,202 - -0.2 609,228 - Atu8033 0.10 -2.7 609,348 - Atu8033 0.28 +0.6 609,453 + Atu8033 0.44 -1.7 609,545 + Atu8033 0.58 +0.5 609,552 - Atu8033 0.60 -0.2 609,674 + Atu8033 0.78 +0.8 609,721 - Atu8033 0.85 -0.4 609,841 - +1.7 609,875 - +0.3 609,915 + +0.1 609,972 + +0.1 609,994 - +0.2 610,021 + +0.3 610,026 - +1.5 610,111 + Atu3557 0.11 +1.6 610,119 - Atu3557 0.11 -0.6 610,119 - Atu3557 0.11 -1.2 610,168 + Atu3557 0.15 -2.9 610,191 - Atu3557 0.16 +0.4 610,191 - Atu3557 0.16 +1.4 610,319 + Atu3557 0.25 +0.6 610,319 + Atu3557 0.25 -0.4 610,319 + Atu3557 0.25 +0.1 610,319 + Atu3557 0.25 -2.4 610,319 + Atu3557 0.25 -0.2 610,426 + Atu3557 0.32 -0.2 610,434 - Atu3557 0.33 -0.1 610,504 - Atu3557 0.38 +0.1 610,527 - Atu3557 0.39 +0.9 610,530 - Atu3557 0.39 -0.8 610,538 - Atu3557 0.40 +1.5 610,545 + Atu3557 0.40 -0.3 610,554 + Atu3557 0.41 -1.4 610,562 - Atu3557 0.42 +0.2 610,564 + Atu3557 0.42 -0.1 610,584 - Atu3557 0.43 -1.6 610,609 + Atu3557 0.45 +1.0 610,856 - Atu3557 0.62 -0.5 610,892 - Atu3557 0.64 +0.3 611,018 - Atu3557 0.73 +0.4 611,018 - Atu3557 0.73 +2.2 611,089 + Atu3557 0.77 +0.5 611,145 + Atu3557 0.81 +0.0 611,345 - +0.1 611,345 - -1.9 611,470 - +1.1 611,515 - -0.8 611,531 + -0.2 611,575 + Atu3558 0.11 -2.0 611,613 + Atu3558 0.15 -0.3 611,753 + Atu3558 0.26 +0.7 611,895 + Atu3558 0.38 -2.6 612,076 + Atu3558 0.53 +0.7 612,083 + Atu3558 0.53 -0.6 612,083 + Atu3558 0.53 -0.6 612,084 - Atu3558 0.53 +1.6 612,125 + Atu3558 0.57 +2.0 612,216 - Atu3558 0.64 +0.2 612,218 + Atu3558 0.64 -0.6 612,293 + Atu3558 0.71 -0.9
Or see this region's nucleotide sequence