Strain Fitness in Agrobacterium fabrum C58 around Atu0676

Experiment: Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0673 and Atu0674 are separated by 6 nucleotidesAtu0674 and Atu0675 overlap by 17 nucleotidesAtu0675 and Atu0676 are separated by 156 nucleotidesAtu0676 and Atu0677 are separated by 4 nucleotidesAtu0677 and Atu0678 are separated by 16 nucleotides Atu0673: Atu0673 - hypothetical protein, at 669,486 to 670,250 Atu0673 Atu0674: Atu0674 - hypothetical protein, at 670,257 to 670,526 Atu0674 Atu0675: Atu0675 - hypothetical protein, at 670,510 to 670,737 Atu0675 Atu0676: Atu0676 - histidyl-tRNA synthetase, at 670,894 to 672,417 Atu0676 Atu0677: Atu0677 - hypothetical protein, at 672,422 to 672,790 Atu0677 Atu0678: Atu0678 - histidyl-tRNA synthetase, at 672,807 to 673,934 Atu0678 Position (kb) 670 671 672 673Strain fitness (log2 ratio) -3 -2 -1 0 1at 670.003 kb on + strand, within Atu0673at 670.038 kb on - strand, within Atu0673at 670.038 kb on - strand, within Atu0673at 670.058 kb on - strand, within Atu0673at 670.134 kb on + strand, within Atu0673at 670.159 kb on + strand, within Atu0673at 670.245 kb on - strandat 670.245 kb on - strandat 670.245 kb on - strandat 670.285 kb on + strand, within Atu0674at 670.285 kb on + strand, within Atu0674at 670.319 kb on + strand, within Atu0674at 670.383 kb on + strand, within Atu0674at 670.498 kb on + strand, within Atu0674at 670.516 kb on + strandat 670.524 kb on - strandat 670.529 kb on - strandat 670.534 kb on - strand, within Atu0675at 670.841 kb on + strandat 670.849 kb on + strandat 672.381 kb on + strandat 672.518 kb on - strand, within Atu0677at 672.531 kb on - strand, within Atu0677at 672.698 kb on - strand, within Atu0677at 672.893 kb on + strandat 672.894 kb on - strandat 672.987 kb on - strand, within Atu0678at 673.348 kb on + strand, within Atu0678at 673.375 kb on - strand, within Atu0678at 673.417 kb on + strand, within Atu0678

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
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670,003 + Atu0673 0.68 +0.2
670,038 - Atu0673 0.72 +1.5
670,038 - Atu0673 0.72 -0.3
670,058 - Atu0673 0.75 -1.7
670,134 + Atu0673 0.85 +1.1
670,159 + Atu0673 0.88 +0.7
670,245 - +0.1
670,245 - -0.3
670,245 - +0.8
670,285 + Atu0674 0.10 -1.4
670,285 + Atu0674 0.10 +1.1
670,319 + Atu0674 0.23 -2.0
670,383 + Atu0674 0.47 -0.8
670,498 + Atu0674 0.89 -1.0
670,516 + -1.1
670,524 - -0.0
670,529 - -0.5
670,534 - Atu0675 0.11 -1.1
670,841 + -0.0
670,849 + -0.7
672,381 + -0.5
672,518 - Atu0677 0.26 -1.3
672,531 - Atu0677 0.30 +0.0
672,698 - Atu0677 0.75 -2.4
672,893 + +0.7
672,894 - -1.2
672,987 - Atu0678 0.16 -3.4
673,348 + Atu0678 0.48 -3.1
673,375 - Atu0678 0.50 -2.0
673,417 + Atu0678 0.54 +0.9

Or see this region's nucleotide sequence